>input_sequence_12557
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-----------ATGGCCAGCAGGAGGTAACGTCTCCCGATCTGACCTCCCCCTTCTTCTCCGACCTCTCTTCTCCTCGAT
CCCCCTCACCACCCTCGTCGTTTTTTCAGGGGAGGCCATGGAGATGAGGGAGACCAGCCGGATCAGGGAGAGCCGGCGGA
CCAGGGAGGACAGGCAGACCCCCGTGGCTACCAGGAGGAGACCTTCGCGGATCGTGAGGATTGGGACAGGTGACCATCTC
ATTTCCTCATC-----TATCTTCTGGACACGTCCAGATTCTTCCTCTGGGACGGTTTGATCCGCGTGGTGCTGTGTAGCT
TCGATCTGGAACGGTTTGGTGACGCGTGTGATGCGATTCCCCTGTGTTGTGGTCGATTTTGTGGTTTAATTAGGCAAAAC
TTTGTTGACGCGTGTGATGCGATTCCCCTGTGT-----------------------------------------------
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--------------------------------------------TGTGGTAGAGTGGCACTACCTATTTGTTTGCACCAG
GTGCTTGCATTTTGACAAAATCAGATTGGAAAAAAAGG---GCACCATTTTGATGTGCATGCTGTAGTGTGTATG----T
GCCCCATGTCACGACGCGTGGCTAACATGATGTTTCCCTTTGACTGGTCTATCATCACAACATGTATGGCGTTGTATTTG
TGCGTTCTGATGAAATATGATGACGGTTGCAGAACAGACCGTATGGTTCTCTTGTGTGGCAGTAGATTTCCTTGATTGGT
TAGGTAGTTGGATCACTGTATATGAACTGCTGATGTTATTTGACTGATTGCTGCATCATGTGACATGAATTCTGATTCTT
CTCTGTACCGTTTTGTTTGAAGGTATCGCGCGGATGAGGGTGTTCTTCCAGGAAACGCGCCGTTGAACTCTTTCCTCGCG
AGGATCGCACGAGGGTTGGCAGCCAAAGCGCGCCAAGGAAGGCAGTAAGTTTCTGCATGTTGCTGTGCTGCTCACCACCT
TTAGATCTTACTCTCAATTGCGTTTTTTGATTTACCCCCCTGCCCCTGCAAATGAGCAGGATGGGACAGCACATATTTAA
CTACTTCAAAGCTGGGGACAAGGACAGCACCAACATCTCGAGGTAAAATTATATTGCCGTGAGCTGTTGCTTTATAAACT
AGATCCTGAATGAGTATCTTATCCGTGGAGAGAATGCTACTGAATACCAAACATAGTTTTTTATTGCTGTATGTTTTATG
GTAGACTCATTTGATTTCTGGTCCTGGTATGAAAGCAGGTCTGTATGGTTTGTTTCCTTCATTTAATTTTTGTATGAGCT
GAGTTAATTCTTTTTTGCTCGTGCTTGCTGTTGTAGTGATATCCTGACCATATGTTCAGTTGGTTGATGAACACTTGCTA
AGATTCACTCTCCTGTCTTTTTAATTCTATTTTGCTCGTGCTTGCTGTTGTAGTGATATCTCGATTATATGTTCAGTTGG
ATGATGAACACTTGCTAAGATTCACTCTCCTGTCTTTTCTTGTTACCATGCATTTGCTACTGGTTCTGTAGTTGTACAGT
TGTTACCTAAGCTTTGACCTGTCCAATTGTTGATGTGCAATCATGTTTTGGCCTTATGCAAGCTTGGTTAATTTTTTGTG
TTCTTGTACATTTATTGGAATTTTATTGTATAGTTGCCAGCTGCTTAGCTACTCTAACCTTTGTTGGCATGTTGTGTTAG
AAATTGTATTGCATATTCTGTTTTTTTAAATCAACCAGGCTCCATTTTTTTTGAATTATTCACTATATGTACTATATTTG
GTATCTAAAGTCTTGAATGAGTAATCCCTGTAGAGACCTACCGTTCTGACATTCTCATTTTTAATATCATATATATATTC
CCATTTCATGTTCTATTAGCTACTTATGGTCCTTGCTTATTAAAGTCATTGCTGTCATATTTGTATAAAAAAATACCTAG
TCTTGTAGAATCTGATGAAGCTTTTATGTGAATATTGTTAACAATGGTTTTTCAACTTATGGTCTACGTGCTGTTGTAAT
TAAACTGTGTCCAATGTCAACTCTGTCTGTATTTACTCCTTTGTTTGTAAAATTGTGCACTACCAACTTTCATGTTGGTT
CCTTTGTAATTTTGAAGTTCTGATGGCAATTCATTTTTAGTCATTGCTGGTCACCCTATATCTTTGTTTACCTCCAGTTT
GTTTGAGTTTATGTTCACCTTAATTGTTATACGAACTAATCCAAGACATGTGCCATCATATTAACAAGTGTAGTGCACTA
TTGAGTTTTTGTATTGTTGTTTTCATCTAGATGTATACAGTTAATGCCCACCTTCCGTTGATCATGACTCAATTTTAATG
CTGACTCAATTGCATCTCAATTTATAGGGATGATTTCCTTGAATTCAAAAATCTTCTGGAGCTGTACCTAAAAGAAATTA
ACTCTTCCATAAAAGTCTCCAGTGCTGAGAATGCCCTTGCGATTGAGAAGTGCATCGGTGCTCACTCCAAGGATATGGAG
CACCTTCTGCAGCAGTTTGAAGCAATGTCTGGTCATGTTAAAGAGGCGGTGTCTATGGGAGCGCGTGCTGAGAAGACATC
TTCAGAGAATGCAGAAAAGATTATCCAGTTGCTTACGGAAATTTCTGTCACTTTGAGGGAAGTTCCGCCTAGCAGTACTG
GTTCATTTGCTGACAGATTCATGCGGATGTCGAAGTATCCATTCGAGGCAGGCCAGGTCTATGAGCAGTTTCGACAGTAC
TTGGAATTTCTTGGCGGATTCTTATTGCTTCTAGGTAAGCTCTACTGCTCCAGAAAAGCTAAAGTAAAGTCAGTAAGGTG
CTATTGCTTGTACTTTCTACTTAAACTTAGATTTATATTTTCTACCTGTACTTGAGAGCTTGAAAGGGAAGACAGATTAG
AAGACTTCCACACCATAACTTCCTTCGTTGGCTGACTCCTTCAGAAACTAGAAAAACTGTAATGACTCACTTCACTATGA
TAACTTATGCAGGAGTTCTGGATCCAAAGGATGAGCAACTGAAGGAGAGGTTCTTTGAAAAGTTCTTACCAGACACCACA
CCTGGGATTTATGAAGATATCTGCCGACAGGGTCGAGACCTCATGTACAAGGATTTCGCCTCTGACCTGAGCTTTCAGAT
GTCAATGCAGTGTGGTGATGGTTTTGTATGTACCCTTAACCTGTACATTTGAAACTGCCATGTGTTTGATGATTTATCCG
TTACTGTCGTTTCAACTGTGACTTATCCGTTACTGTCGTTTTGTACAGGTTCTTACTTCATCTGCCAAGAGATCTCCAAT
GGATGACAATGTGCATGGCTGCCAGCTGAGACTTCGGCAGCCCCAACTGAGCCTTGATTTCAAATTTGATACAACAAAAC
ATGTTAGTCTTGCCAACTAAGCCTTCATTCATTTCTTTTATTCGTTTATACTATTTGTACTGATCGTGTGTTAATTTTTG
TCCATTCCTACCCTATAGGTGAGCGCTATAGTATCTTTCCCTGGAGTGCTAGGCTGTGATGTGAACCCTGTCCTTAAAGT
CTGTTACCCATTCCGGGACTCTTCGTTTGTAAGTTTCTATCTGTCTTTTACCTTTCCTCATATCAAAGACTTGCTTGCCA
TTCCTGATTGAACCTTGCTCCGGTCTCTTTTCTTTTCAGAATTTGGATGCTCTTTATCGGCAAGCTGGCTTTCGTGCAAT
TGCTTCTATGCACCCTGTTCGTGGTGATGCATTGGTGTCTCTGTCGGGCCTTTTTGGATCCAGGAGGTTGAACTATGGGG
GTCTTATGAAGATGAATTTGGGGAATGAGGTGCCTAACTTTTATTCCCTTGGTTGTTCCTTCAACACTGAAGCTTTCTCG
TGTGGCATCCAGTGGTGAGTTCACCCTCTGTCTGTGTTGTGGTACTTCTTTGTCATGTCTGAATACTTATCTGGTTGTGG
ATTGACATTTGGAATTTGACGTGGTTTTTGCTGTTAACAGTAATAGCCATGCTCAGGTGTTGATGCTGTTAAATCACAAG
CTGGAGCCCTGTTCCTTATTCAGAGACGCTGTGAGGAGGACCAACCTGGGAGGGGATCTGTATGATCTGCTGGCACGGAC
CACTCCATCGCAAACTATGGTTGGCGCGCAAGCAATTCATTGCCTGGCAACTGGCTCGAGTGTGGTCATGGTTGGTTGCG
AGTATGCTGATCCGAGCACCCGCTTCAAGCTACGTGTGGGCAGTTCAGGCATACTTAGTGCTGTTGTGAAGCACAAGTTT
TTTGGGTCAGCATGGGTTGCGCTGAAGTCACACTTCAACTTGAGGAATATCCGTGCCGCTCCTCGCCTCGGCCTGTCTAT
CAGCATCGGGGAGGCATCGTCGTCATCATCTTAG----------------------------------------------
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--------------------------------------------------------------------------
>chr1D_1_TraesCS1D01G450600
CTAGCCGCCCCAATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCCTTGCTTGAAACACAGGCAACGGATGGA
TGGAGGCCTCTCCTTGCCTTTGCCCTTCTTCATCACAAGAAGGCAAAAGGATGGTTC----ATGGATGGATGGAGGCCTC
TCTTCTCTTCAAGACAAGAAGGCAAAAGGAGGATTCATGGATGGATGGACGGCCACCATGACACGGTAGGTAGGTCAAAG
AGATCTTTCTCAACTAC------GTAGCTACATGAGTTGTTTGTATGCTAAA--------------ATCCATTGCTACTG
ACCCATGGATGGATTTTGCAGATCCGGCCACCTCCTCCTTGGATCTACAATTTTTTTTTCTTTCGGAGCAAAAGTCGCCC
TTGGATCTGCAAGTTTTTGGGGCAAAGTCCGTCCATGGTGTGCTACTCACCATGCCCGTCAGGATCCGCCAAGGTCTCCC
--------TAGCCATGGTATGATAAGATCATTGCTATCATAGATGCGTTACTTTAGATTTGTTTTTTTAATTCTATCTTG
TTGCAAATTTCTTGCCTGACTGACGATTTTTTT----CCCCTGCAGCGGAGACGAACTCAGTTTCCTCTTTCTTTCTTTC
TTTCC----------AAGAGGAAGGAAACTGGCCATGGCCCAGCACCATTTCGCCCGCCGACCAAGGCCAAGCACAATTT
CGCCCGCCGAAGGCCCAGGCGTCGCCGGACGACCAAGGCCCAGCACCATTTCGCCCGCCGACCAAGGCCCAGCACCATTT
CGCCCACCGACCAAGGCCCAGCACCATTTCGCCCACCGACCAGGGCCCAGGCGTCGCCCACCGACCAAGGCCC-----GG
CACGACTACCCAGTCCCACGGCGCCGCCCACCCGACCCGACTCATTTCCCTACTTCCTCTCCCCGACCCCTCCCCCATCC
CCATCCCCATCCCCATCCAGAACCCTAGCTCCGCCTCCTCCACCGCCGCACCTCCAACCGCCGCCGCCGCGACACCGCCG
GCCGGACTCCGATGGCCAGCAGGAGGTAACGTCTCCCGATCTGACCTCCCCCTTCTTCTCCGACCTCTCTTCTCCTCGAT
CCCCCTCACCACCCTCGTCGTTTTTTCAGGGGAGGCCATGGAGATGAGGGAGACCAGCCGGATCAGGGAGAGCCGGCGGA
CCAGGGAGGACAGGCAGACCCCCGTGGCTACCAGGAGGAGACCTTCGCGGATCGTGAGGATTGGGACAGGTGACCATCTC
ATTTCCTCATC-----TATCTTCTGGACACGTCCAGATTCTTCCTCTGGGACGGTTTGATCCGCGTGGTGCTGTGTAGCT
TCGATCTGGAACGGTTTGGTGACGCGTGTGATGCGATTCCCCTGTGTTGTGGTCGATTTTGTGGTTTAATTAGGCAAAAC
TTTGTTGACGCGTGTGATGCGATTCCCCTGTGT-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TGTGGTAGAGTGGCACTACCTATTTGTTTGCACCAG
GTGCTTGCATTTTGACAAAATCAGATTGGAAAAAAAGG---GCACCATTTTGATGTGCATGCTGTAGTGTGTATG----T
GCCCCATGTCACGACGCGTGGCTAACATGATGTTTCCCTTTGACTGGTCTATCATCACAACATGTATGGCGTTGTATTTG
TGCGTTCTGATGAAATATGATGACGGTTGCAGAACAGACCGTATGGTTCTCTTGTGTGGCAGTAGATTTCCTTGATTGGT
TAGGTAGTTGGATCACTGTATATGAACTGCTGATGTTATTTGACTGATTGCTGCATCATGTGACATGAATTCTGATTCTT
CTCTGTACCGTTTTGTTTGAAGGTATCGCGCGGATGAGGGTGTTCTTCCAGGAAACGCGCCGTTGAACTCTTTCCTCGCG
AGGATCGCACGAGGGTTGGCAGCCAAAGCGCGCCAAGGAAGGCAGTAAGTTTCTGCATGTTGCTGTGCTGCTCACCACCT
TTAGATCTTACTCTCAATTGCGTTTTTTGATTTACCCCCCTGCCCCTGCAAATGAGCAGGATGGGACAGCACATATTTAA
CTACTTCAAAGCTGGGGACAAGGACAGCACCAACATCTCGAGGTAAAATTATATTGCCGTGAGCTGTTGCTTTATAAACT
AGATCCTGAATGAGTATCTTATCCGTGGAGAGAATGCTACTGAATACCAAACATAGTTTTTTATTGCTGTATGTTTTATG
GTAGACTCATTTGATTTCTGGTCCTGGTATGAAAGCAGGTCTGTATGGTTTGTTTCCTTCATTTAATTTTTGTATGAGCT
GAGTTAATTCTTTTTTGCTCGTGCTTGCTGTTGTAGTGATATCCTGACCATATGTTCAGTTGGTTGATGAACACTTGCTA
AGATTCACTCTCCTGTCTTTTTAATTCTATTTTGCTCGTGCTTGCTGTTGTAGTGATATCTCGATTATATGTTCAGTTGG
ATGATGAACACTTGCTAAGATTCACTCTCCTGTCTTTTCTTGTTACCATGCATTTGCTACTGGTTCTGTAGTTGTACAGT
TGTTACCTAAGCTTTGACCTGTCCAATTGTTGATGTGCAATCATGTTTTGGCCTTATGCAAGCTTGGTTAATTTTTTGTG
TTCTTGTACATTTATTGGAATTTTATTGTATAGTTGCCAGCTGCTTAGCTACTCTAACCTTTGTTGGCATGTTGTGTTAG
AAATTGTATTGCATATTCTGTTTTTTTAAATCAACCAGGCTCCATTTTTTTTGAATTATTCACTATATGTACTATATTTG
GTATCTAAAGTCTTGAATGAGTAATCCCTGTAGAGACCTACCGTTCTGACATTCTCATTTTTAATATCATATATATATTC
CCATTTCATGTTCTATTAGCTACTTATGGTCCTTGCTTATTAAAGTCATTGCTGTCATATTTGTATAAAAAAATACCTAG
TCTTGTAGAATCTGATGAAGCTTTTATGTGAATATTGTTAACAATGGTTTTTCAACTTATGGTCTACGTGCTGTTGTAAT
TAAACTGTGTCCAATGTCAACTCTGTCTGTATTTACTCCTTTGTTTGTAAAATTGTGCACTACCAACTTTCATGTTGGTT
CCTTTGTAATTTTGAAGTTCTGATGGCAATTCATTTTTAGTCATTGCTGGTCACCCTATATCTTTGTTTACCTCCAGTTT
GTTTGAGTTTATGTTCACCTTAATTGTTATACGAACTAATCCAAGACATGTGCCATCATATTAACAAGTGTAGTGCACTA
TTGAGTTTTTGTATTGTTGTTTTCATCTAGATGTATACAGTTAATGCCCACCTTCCGTTGATCATGACTCAATTTTAATG
CTGACTCAATTGCATCTCAATTTATAGGGATGATTTCCTTGAATTCAAAAATCTTCTGGAGCTGTACCTAAAAGAAATTA
ACTCTTCCATAAAAGTCTCCAGTGCTGAGAATGCCCTTGCGATTGAGAAGTGCATCGGTGCTCACTCCAAGGATATGGAG
CACCTTCTGCAGCAGTTTGAAGCAATGTCTGGTCATGTTAAAGAGGCGGTGTCTATGGGAGCGCGTGCTGAGAAGACATC
TTCAGAGAATGCAGAAAAGATTATCCAGTTGCTTACGGAAATTTCTGTCACTTTGAGGGAAGTTCCGCCTAGCAGTACTG
GTTCATTTGCTGACAGATTCATGCGGATGTCGAAGTATCCATTCGAGGCAGGCCAGGTCTATGAGCAGTTTCGACAGTAC
TTGGAATTTCTTGGCGGATTCTTATTGCTTCTAGGTAAGCTCTACTGCTCCAGAAAAGCTAAAGTAAAGTCAGTAAGGTG
CTATTGCTTGTACTTTCTACTTAAACTTAGATTTATATTTTCTACCTGTACTTGAGAGCTTGAAAGGGAAGACAGATTAG
AAGACTTCCACACCATAACTTCCTTCGTTGGCTGACTCCTTCAGAAACTAGAAAAACTGTAATGACTCACTTCACTATGA
TAACTTATGCAGGAGTTCTGGATCCAAAGGATGAGCAACTGAAGGAGAGGTTCTTTGAAAAGTTCTTACCAGACACCACA
CCTGGGATTTATGAAGATATCTGCCGACAGGGTCGAGACCTCATGTACAAGGATTTCGCCTCTGACCTGAGCTTTCAGAT
GTCAATGCAGTGTGGTGATGGTTTTGTATGTACCCTTAACCTGTACATTTGAAACTGCCATGTGTTTGATGATTTATCCG
TTACTGTCGTTTCAACTGTGACTTATCCGTTACTGTCGTTTTGTACAGGTTCTTACTTCATCTGCCAAGAGATCTCCAAT
GGATGACAATGTGCATGGCTGCCAGCTGAGACTTCGGCAGCCCCAACTGAGCCTTGATTTCAAATTTGATACAACAAAAC
ATGTTAGTCTTGCCAACTAAGCCTTCATTCATTTCTTTTATTCGTTTATACTATTTGTACTGATCGTGTGTTAATTTTTG
TCCATTCCTACCCTATAGGTGAGCGCTATAGTATCTTTCCCTGGAGTGCTAGGCTGTGATGTGAACCCTGTCCTTAAAGT
CTGTTACCCATTCCGGGACTCTTCGTTTGTAAGTTTCTATCTGTCTTTTACCTTTCCTCATATCAAAGACTTGCTTGCCA
TTCCTGATTGAACCTTGCTCCGGTCTCTTTTCTTTTCAGAATTTGGATGCTCTTTATCGGCAAGCTGGCTTTCGTGCAAT
TGCTTCTATGCACCCTGTTCGTGGTGATGCATTGGTGTCTCTGTCGGGCCTTTTTGGATCCAGGAGGTTGAACTATGGGG
GTCTTATGAAGATGAATTTGGGGAATGAGGTGCCTAACTTTTATTCCCTTGGTTGTTCCTTCAACACTGAAGCTTTCTCG
TGTGGCATCCAGTGGTGAGTTCACCCTCTGTCTGTGTTGTGGTACTTCTTTGTCATGTCTGAATACTTATCTGGTTGTGG
ATTGACATTTGGAATTTGACGTGGTTTTTGCTGTTAACAGTAATAGCCATGCTCAGGTGTTGATGCTGTTAAATCACAAG
CTGGAGCCCTGTTCCTTATTCAGAGACGCTGTGAGGAGGACCAACCTGGGAGGGGATCTGTATGATCTGCTGGCACGGAC
CACTCCATCGCAAACTATGGTTGGCGCGCAAGCAATTCATTGCCTGGCAACTGGCTCGAGTGTGGTCATGGTTGGTTGCG
AGTATGCTGATCCGAGCACCCGCTTCAAGCTACGTGTGGGCAGTTCAGGCATACTTAGTGCTGTTGTGAAGCACAAGTTT
TTTGGGTCAGCATGGGTTGCGCTGAAGTCACACTTCAACTTGAGGAATATCCGTGCCGCTCCTCGCCTCGGCCTGTCTAT
CAGCATCGGGGAGGCATCGTCGTCATCATCTTAGTTGAGGAGGCAGGCATTTGCAAGACCAGAGCTCTGGAATGTTATAG
TTTAGTGGAGTATCACGCTGCAATGGTTGCTGGTTGGTGATGGTGCCCTAGTCTCTCTGGAAGTTGGTTGCAGGAGCCTT
TAACTTGTTTGGAGATAGGTTTTGCTGTGTCGTAAACAGCAGTGAAAGTTTTGATGATGATGATGATTTTGCTGTGTCGT
AAACAGCAGTGAAAGTTTTGATGATGATGATTTTGCTGTGTCTTAAACAGCAGTGGAAGTTTTGATGATGATGATATGAT
GAAGTGGATATTTTAGATTTTGGCTGTGCATTGCTTTGCTGCTTGCTGCTTTGTTTGCCTGGCAGTTTTGTTTAGTTGAT
CGTTGTGTATAACAGTTGCTATTTCGTTTTTACCTGTTACGTTATTTAACTTGCTATATCCAGAAAGGTTGCGTCCATAC
GTAACACTTGCAACCTTCCAACTGCTATCATAAGATGCACTTGTTAGAATTTGTGTAGAGTTTAGTTTCTGTTCTGATGC
TGTTTCGCTGTATCACCAGAAGTTGGAACTTTTTTTTAAAACAATCAGGATAGTTTGTTGTTGGTTGCCAATCCTTTCCA
TGACTTTTTTAGGCTGCGCTATACCCATGAGCAGAAAATACAAACTGGATTGGAATTAGGGAGTTTTAATGTGATTTGCT
GTCAAAAAAAGTTTAAATTGTGATTAGCTCCTGTGGCTCAAATGTCATACACATACTTCTCAAGCGGGTTGGATATTCGA
TGGGTCCCAAAACCCAAGGTGAGTTGACATTTTTATGTGTTATCAAGGGTAATTCTTTGTGTAGTCTGCCTACATGGAAG
TATGGAAAAATAAGTATGCAGCCAAATTTCCTATTGGAAATATGCCTAGTTCTGCTGCCTGAAACCCAATATGCAAAAGT
TAGGATTTTTCTCTGGCGAACCTGGCACGGTACGCTCCCCAGCCGAGTTACCCTAGCACATGTTATTTCAATGC
>chr1B_74
-------------------------------------------------------------------------GGATGGA
TGGAGGCCTCTCCTTGCTTTTGCCTTTCTTCATCACAACAAGGCAAAAGCAGGATTCATGGATGGATGGATGGAGGCCTC
TCTTCTCTTCAAGACAGGAAGGCAGAAGCAGGATTGATGGATGGATGTACCAAGA----------------AGGTCAAAG
ACATCTTTCTCAACTAGATGGTGGTACCTACATGAGTTGTTTGTAATTGCATGAAAGATGAAATCCATCCATTGGTACTC
ACCCATGGATGGATTTTGCAGATCCGGCCACCTCCTCTTTGGATCTACAGT---------TTTCGGAGCAAAAGTCG---
TTGGATCTGCAAGTTTTTTGGTGCGGTGTT------------CTACTCACCATGCCCGTCAGGATCCGCCAAGGTCTCCT
CCTCCTGGTAGCCATGGTATGCTACG--------TATCATAGATGCGTTACTTGAGATTCGTTTGTGTAATTCTATCTTG
TTGCAAATTTCTTGCCCGACTGACGTTTTTTTTTCTTCCCCTGCAGCCGAGACGAACTCAGTTTCCTCTTTCTTTCTTTC
TTTCTTTCCAAGAGGAAGAGGAAGGAAACTGGCCATAGCCCAGCACAATTTCACCCGCCGACCAAGGCCCAGTACAATCT
CGCCCGC----------------------CGACCAAGGCCCAGCACAATCTCGCCCGCCGA---AGGCCCAGCACCATTT
CGCCCGCGGACCAAGGCCCAGCACCATTTCGCGCGCACTAA--GGCCCAGGCGTCCCCCACCGACCAAGGGATGGCCGGG
CACGACTACCCAGTTCCACGGCGCCGCCCACCCGACCCGACTCATTTCGCTACTTCCCCTCCCCGACCCCTCCACCATCC
CCATCCCCATCCCCATCCAGAACCCTAGCTCCGCCTCCTCCACCGCCGCACCTCCTACCGCTGCCGCCGCGACACCGCCG
GCCGGACTCCGATGGCCAGCAGGAGGTAACGTCTCCCGATCTGACCTCCCCCTTCTTCTCC--------------TCGAC
CCCCCTCACCACCCTCGTCGATTTTTCAGGGGAGGCCATGGAGATG------------------AGGGAGAGCCGGCGGA
CCAGGGAGGACAGGCAGACCCCCATGGCTACCAGGAGGACACCTTCGCGGATCGTGAGGATTGGGACAGGTGACCATCGC
ATTTCCCCATCCATCTTATCTTCTGGACACGTCCAGATTCTTCCTATGGGACGGTTTGATCCGCGTTGTGCTGTGTAGCC
TCGAGCTGGTGCGGTTTGGTGACGCGTGTGATGCAATTCCCCTGTGTTGTGGTCGATTTCGTGGTTTAATTAGGCCTTCT
GAGCAGTGTACTATTGTACGATGTGCTGCCGGCGTCATTTGGCTGACATCTAGGGCTTTGTGTTGTGTGTGAACTGATAA
CTGTCGGTGTTGGTGGTGAAATTGTCGATATCATGCTATAAGAAGTGACTAGGAACTGTTCCCCATCTAGGAGTTGTATC
ATTTTAGCGAGAACTATGCCTTGCCCCAACATTGCTGCTGTTATTGTGCTTAAGCTGGTTTGGTGCTCCTATAACTTCCT
TAAGGAAATTCGCGATCTAGTATTTTGATCTTCTTTGCATATTGTGTGCTAGAGCGGCACTACCTATTTGTTTGCACCAG
GTGCTTGCATTTTGACAAAATCAGATTGGAAAAAAAAGGGAGCACCATTTTGATGTGCATGCTCTAGTGTGTATGCATTT
GCCCCATGACACGATGCGTGGCTAACATGATGTTTCCCTTTGACTGGTCTATCATCACAACACGTATGGCGTTGTATTTG
TGTGTTCTGAGGAAATATGATGATGGTTGCAGAACAGACAGTATGGTTCTCTTGTGTGGCAGTAGATTTCCTTGATTGGT
TAGGTAGTTGGATCACTGTATTTGAACTGCTGATGTTATCTGATTTGTTGCTGCATCATGTGACATGAATTCTGATTCTT
CTCTGGACTGTTTTGTTTGAAGGTATCGCGCGGATGAGGATGTTCTGCCAGGAAACGCGCCGTTGAACTCTTTCCTCGCG
AGGATCGCACGAGGGTTGGCCGCCAAATCGCGCCAAGGAAGGCAGTAAGTTTCTGCATGTTGCTGTGCTGCTCACCCCCT
TTAGATCTTACTCTCAATTGCGTTTTTTGATTTACCCCCCTGCCCCTGCAAATGAGCAGGATTGGACAGAACGTATTGAA
CTTCTTCAAAGCTGTGGACAAGGACTGCACCAACATCTCAAGGTAAAATTATATTGCCGTGAGCTGTTGCTGTATAATCT
AGATCCTGAATGAGTAGCTTATCCGTGGAGAGAATGCCACTGAATACCAAACATAGCTTTTTATTGCTGTATGTTTTATG
GTAGACTCATTTGATTTCTGGTCCTGGTATGAAAGCAGGTCTGTATGATTTGTTTCCTTCATTTAATTTTTGTATGAACT
--GTTAATTCTTTTTTGCTCGTGCTTGCTGTTGTAGTGATTTCCTGACCATATGTTTGGTTGGTTGATGAACACTTGCTA
AGATTCACTCTCCTGTCTTTTTAATTCTTTTTTGCTTGTGCTTGCTGTTGTAGTGATATCTCGACTATATGTTCAGTTGG
TTGATGAACACTTGCTAAGATTCACTCTCCTGTCTTTTCTTGTTACCTTGCATTTGCTACTGGTTATGTAGTTGAACAGT
TGTTACCTAAACTTTGACCAATTG------TGATGTGCAATCATGTTTTGGCCTTATGCAAGCTTGGTTAATTTTTTGTG
TTCTTGTACATTTATTGGAATTTTATTGTATAGTTGCCAGCTGCTTATCTAATCTAACTTT-------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
-----------------S------S-------------S----------S-S-S--------------------------
----------------S-------S---S------S-----------S--SSSS-SSSSSSSSSSSSSSSS---------
-S--------------S---------S------------------SSSSS-S----------------------S----S
-------------------------------------S-----------S-SSSSSSSSS-----------------SSS
------------------S--SSSSSSSSSSSSSSSSSSSSS-------------------------------------S
---------------------S--S-SSSSSSSS-------------------S-----S----S-S-------------
----------------S--------S---------------------S--------------------------------
----S-------------------------------S---------S-----S----------------S--S-----S-
-------SSSSSSSSSSSSSSSSSSSSSS-----------------S--S-----------SSS----------------
-----S-S------------------------S-S-SSSSSSS------------S--------------SSS-------
--------------S---------------------------------S--------S---------------S------
-------------------------------------------------------S-----S------------------
-------------------------------------------------------------SSSSSSSSSSSSSS----S
--------------------S-------------------------SSSSSSSSSSSSSSSSSS----------------
-----------------------S---------------S--------------------------------------S-
------S--------------------------------------S--------------------S------------S
----S----SS-----------------------S------------------------S---------------SSSSS
SSSSSSSSSS-SSS--SSSSSSS-S-SSSSS-S-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S-----S-------------------------
------------------------------------S--------------------------S----------------
--------S-----S-----------------------------------------------S-----------------
--S-------S------------S---------------S----------------------------------------
---------------------S-----------------S---S-SS---------------------------------
-----S--S------------------------------S------S---------------------------------
--------------------S------S------------------------------------------------S---
--------------------------------------------------------------S------S--S----S--
--S-----------S----------S-------------S-------------------------------S-----S--
----------------S--------------------S------------------S-----------------------
-----------------------------------------------S-----------------------------S--
SS--------------------------------------S---------------SS----------------------
----------------------------S-------S---------------------------S---------------
S----------------------------------------------S-----------------S--------S-----
----------S--------SS-SSSSSSSS--------------------------------------------------
-----------------------------------------------S---S------S--SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_399
--------------------------------------------------------------------------------
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-----------------------------------------------------------CTTTCGGAGCAAAAGTCGCC-
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>reverse_1457
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----------------ATGCGATTCCCCTGTGTTGT--------------------------------------------
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>forward_1108
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------------------------------------------------CCCCTTCTTCTCCGACCTCT------------
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>reverse_2669
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----------------------------ATTTTGCTCGTGCTTGCTGT--------------------------------
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>forward_2360
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--------------------AGGACAGCACCAACATCTCG----------------------------------------
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>reverse_4180
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-------------------TTCCTTCGTTGGCTGACTCC-----------------------------------------
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>forward_3731
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-------------------------------TGCCCTTGCGATTGAGAAGT-----------------------------
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>reverse_5420
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-----------------------------------------------------------GTGTGGTCATGGTTGGTTGC-
--------------------------------------------------------------------------------
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>forward_4199
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-------------------TTCCTTCGTTGGCTGACTCC-----------------------------------------
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>reverse_5610
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---------GGAGGCATCGTCGTCATCAT---------------------------------------------------
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>forward_5439
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-----------------------------------------------------------GTGTGGTCATGGTTGGTTGC-
--------------------------------------------------------------------------------
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>reverse_6254
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-------------CTGCGCTATACCCATGAGCA-----------------------------------------------
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--------------------------------------------------------------------------
