>input_sequence_87643
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-----------------------------ATGCTTACTTTAACTAGTTATTTTGGTTTTCTACTGGCTGCTTTAACTATA
ACCCCAGCTCTATTTATTGGCTTGAACAAGATACGCCTTATTTGA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------
>chr2D_1_TraesCS2D01G087200
GGCACTCGAGGTTCGGCGGCATCTTCGCGGGCGGCGGCGGCGGTGGGGGGCGGGGTGGGGAGGGGAGCTAGGGTTTTGGG
GGGTGCGGCGGAGACGGGCGAGGGGCAGCCGGGTTATGGATTGGTTGGATTGGCGAGCGAGCTGCGAATCGACGATGTGG
AGGGGCCGTGGAGTACGTGAGCCTTTTATGAAGACGCCAAACGGGTATGCGTGTCCAGCCTCGTGTGGATACAGGTTTCA
GCCCGATTTATTTGAGTTACCTCCGTGCTCGGACACCGAAATTAGATATTTGATTTCTAAATAGAGTCCGTCTATGTCAC
ATCTAGATGTGAGATA-TATCTCATATCTAAGTTTTTTTTGTCC-------TATT-------------------------
TATTTGTCATGTTTGTTTGATTTTAATTTGTCAATGTCCAAAACTAAAAATTACCTCCTCATGTGTCCGCCTTG-GTCAC
CAGCCTATAC--GCAAATCTGGTCACTAACT-----CCTCTCGTA-A---AAAA--AATTCTGGTTGATAGCTACCCGTA
CAAGGAA-----------------CCTGATCGCTAGCTTTTTCTGGAAAACAAAATGATCGCTAGTGCTA-AATCGACTT
GTTAGCTTTTGCCTCTGATCATTATACATTTACAAGGACATCTCCCATAGCTAGCTTCTAGGCAACCAACGATTTATTTT
ATTTTTTGCCTTTATGTTTTTGCGTTTTTCACTATTA-TATTTTATAATTAATTTTCAGTAAAGAACAAAATTTCATCAA
CACATATTTCAAAAACATGTTCACGAATTTACATAAGTTTTTTCAAATTCTAAAAAATG-TTAACGAATA-CCAAAAATG
TTCTAATATATGGTGAACAATGCTTTATATGACCTGATGAATCCACTTTCTTTTACACTTCTGTATCTTACTCTATCTTG
TTTTTTAGTATTATCTAAAATAACTGATGAATTATGAATTTTCCATAACTTAGGTAAATGCTTTACCAACATATGTAGTG
TAGTAAA-AAAATGGAATTTAACTCTTTCATGCTTACTTTAACTAGTTATTTTGGTTTTCTACTGGCTGCTTTAACTATA
ACCCCAGCTCTATTTATTGGCTTGAACAAGATACGCCTTATTTGAATTGACTGAATAATTATAATTTAGAAAAGAAAAAT
CTTTCTTTTGGATTCCTGGCACTAAATACACACT-A--TTTTCTTCCAATACACACTGAACATTGTTTTTGATATACATG
AACTTTTTAATATACGATGAACTAAAAGTGAA--CTTTTTTATATACATTGAACTAAAAGCGAACAGGAAAAAACAAAAT
AGATAAAATAGATAAATAACAAGACAA------AAAA-AA---CACATTTTGATTTGC-TTTAAAAAA-CTGATCAACAT
GAACAATTTTAGAAAAATGAACTAATTTACAAATTTTGAAACATGTATTGAAACTTGTGAATTTATGAACAAAC-AAAAA
-TTATCAGAATATGAAAAACAATGAGATCAACTTTTGAAAAATAGAAAAAT--AAAAAGGAGATGAAGAACAATGAAGAA
ACATGATAAATAAAAAAGCAGAAAGAACATGAAGAAAA-TGAAACAAAAC-AAAAAAAAAGGTATCATAACTACTTGGGC
CGGCTCATCTGCAGTTTGTTCGCTGACTAGGGTGGACTTGAAACTAGGAAAAA-AATATTGGACCCCCAATGGCAAGTCG
AGGGTGGACTCTCAATTGGGAACAAAAAA-GGTCGGGCCCCAGTTGCGAGTCGAGTTTGGACTTGCAACTGGGGAC-AAA
AAATGGTTGGACCCTAATTGCGAGTCAAGGGTGGACTTGCGGCTGGGACTAGAAAGGGTCGAACCCCAGTTGCGAGTCGA
CAGTGGACTTGCAACTGGGGTAAAAGGTCGACCCCAGTTACGAATCGAGGGTGGACTCGCAATTAGGACAAAA-AAATGG
CGGGCACCAGTTGCGAGTCAAGGGTGAACTTGCAACTCAGAAA-AAAAAAGGTTCAGCCGTAGTTGCGAGTCGA-GGGTG
GACTTACAACTCGGACAAAAA-ATGTTGGGCCCCAGTTGCGAGTCGAGGACGAACTTGCAACTCAGACAAAAAAG-GTTG
GGCCCTAGTTGCGAGTCGAGCGTGGACTTGCAACTC
>chr2D_299
AAAAG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------GGTCCGTCTATGTCAC
GTCTAGATGTGAGATAATATCTCACATCTAAGTTTTTTTTGTCC-------TATT-------------------------
TGTTTGTCATGTTTGTTTGGTTTTAATTTATCAAAGCCCAAAACTAAAAATTACCTCGTCGTGCATCCGCCTTG-GTCAC
CAGCCTATAC--GCAAATCTGGTCACTAGCT-----CCCCTTGTA-A---AAAA--AATTCTGGTTGATAGCTACCCGTA
CAAGGAA-----------------CCTGATCGCTAGCTTTTTCTGGAAAACAAAATGATCGCTAGTGCTA-AATTGACTT
GTTAGCTTTTGCCTGTGATCATAATACATTTACAAGGACATCTTCCATAGCTAGCTTCTAGGCAACCAACGATTTATTTT
ATTTTTTGCCTTTAGGTTTTTGCGTTTTTCACTATTA-TATTTTATAATTAATTTTCAGTAAAGAACAAAATTTCATCAA
CACATATTTCAAAAACATGTTCACGAATTTACATAAGTTTTTTCAAATTATAAAAAGTG-TTAACGAATA-CCAAAAATG
TTCTAATATATGGTGAACAATGCTTTAATATATG----------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CTGATCATTTT----------------------------------------
--------------------------------------------------------------------------------
---------------------CTGAATACACACTAA-----------AATACACACTGAACATTGTTTTTGATATACATG
AACTTATTAATACACGATGAACTAAAAGTGAA--CTTTTTTATATACATTGAACTAAAAGCGAACAGGACAAATCAAAAT
AGAGAAAATAGATAAATAACAAGACA-------AAAA-AA---CACATTTTGATTTGC-TTTAAAAAA-TTGATCAACAT
GAACAATTTTAGAAAAATGAACTAATTTATAAATTTTGAAACATGTATTGAAACTTGTGAATTTATGAACAAAC-AAAAA
ATTAACATAATATGAAAAACAACGAGATCAACTTTTGAAAA-TAGAAAAAT--AAAAAGGAGATGAAAAACAATGAAGAA
ACATGATA---AAAAAACCAGAAAGAACATGAAGAAAAATGAAACAAAAC--AAAAAAAAGGTATCTTAACTACTTGGGC
CAGCTCATCTGTTGTTTGTTCGCTGACTAGGGTGGACTTGAAACTAGGAAAAAAAATATTGGACCCCCAATGGCAAGTCG
AGGGTGGACTCTCAATTGGGAACAAAAAA-GGTCGGGCCCCAATTGCGAGCCGAGTTTGGACTTGCAACTGGGGAC-AAA
AAATGGTTGGACCCTAATTGCGAGTCAAGGGTGCACTTGCAGCTGGGACTAGAAAGGGTCGAACCCGAGTTGCGAGTCGA
CGATGGACTTGCAACTGGGGTAAAAGGTCGGCCCCAGTTACGAATCGAGGGTGGGCTCGCAATTAGGACTAAA-AAATGT
CGGGCACCAGTTGCGAGTCGAGGGTGAACTTGCAACTCAGAAAAAAAAAAGGTTCAACTGTAGTTGCGAGTCGA-GGGTG
GACTTGCAACTCGGACAAAAA-ATGTTGGGCCCCAGTTGCGAGTCGAGGACGAACTTGCAACTTAGACAAAAAAG-GTTG
------------------------------------
>chr3D_299
AAAAG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------GGTCCATCTATGTCAC
ATCTATATGTGAGATAATATCTCACCTAA-----------------------GTT-------------------------
TTTTTGTCCTATTTGTTTGACTTTAATTTGTCAAAGACCAAAACTAAAAACTACCTCATCGTGCGTCCGCCTTG-GTGAC
CAGCCTATAC--GCAAATCTGGTCACTAGCT-----CAT-----------AAAA--AAATCTGGTTGCTAGCTACCCGTA
CAAGGAA-----------------CCTGACCGCTAGCTTTTTCTGAAAAACAAAATGATCGCTAGTGCTA-GATCGACTT
GTTAGCTTTTGCCTCTGATCATTATACATTTACAAGGACATCTCCCATAGCTAGCTTCTAGGCCATCAACGATTTATTTT
ATTTTTTGCCTTTTGGTTTTTGTGTTTTTCACTATTC-TATTTTATAATTAATTTTCAGTAAAGAACAAAATTTCATCAA
CATGTATTTCAAAAACATGTTCACGAATTTACATCAGTTTCCTCAGATTATAAAAAATG-TTAAGGAATA-CCAAAAATG
TTCTAATATATGGTGAACAATGCTTTAATATATG----------------------------------------------
--------------------------------------------------------------------------------
-----------------------------ATGATCATTTT----------------------------------------
--------------------------------------------------------------------------------
---------------------CT---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>chr2D_301
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------ATAGGGTCCGTCTATGTCAC
ATCTAGATGTGAGATAATATGTCACATCTAAG------------------------------------------------
TTATTTTCCTGTTTGTTTGACTTTAATTTGTCAAAGCCCAAAACTAAAAACTACCTTATCGTGCGTCCGTCTTG-GTGAC
CGGCCTATAC--GCAAATATGGTCACTAGCT-----CCCCTCATA-A---AAAA--A--TCTAGTTGCTAGCTACCCATA
CAAGGAACCTTTGTTTTTAAGGAACCTGATCGTTAGCTTTATCTGGAAAACAAAATGATCGCTAATGCTA-AATCGACTT
GTTAGCTCTTGCCTCCGATCA------------------------CATAGCTAGCTTCTAGGCTACCACCGATTTATTTT
ATTTTTTGCCTTTTGGTTTTTGCGTTTTTCACTATTA-TATTTTATAATTAATTTTCAGTAAAGAACAAAATTTCATCAA
CACATATTTTAAAAGCATGTTCACGAATTTACATAAGTTTTTTCAAATTATAAAAAATG-TTAACAAATA-CCAAAAATG
TTCTAATATATGGTGAACAATACTTTAATAT-------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------
>chr7D_303
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------AGAGTCTGTCTATGTCAC
ATCTAGATGTGAGATAATATCTTATATCTAAGT--------------------TT-------------------------
TTTTTGTCCTATTTGTTTGATTTTAATTTGTCAATGCCCAAAACTAAAAATTACCTTCTCGTGCGTCCGCCTTG-GTCAC
CAGCTTATAT--GCAAATCTGGTCACTAGCT-----CCCCTCGTA-A---AAAA--AATTCTGGTTGATAGCTACCCGTA
CAAGGAA-----------------CCTGATCGCTAGCTTTTTCTGGAAAACAAAATGATCGCTAGTGCTA-AATCGACTT
GTTAGCTTTTGCCTCTGATCACTATACATTTACAAGGACATCTCCCATAGCTAGCTTCTAGGCAACCAACGATTTATTTT
ACTTTTTTGCCT----TTTTTGCATTTTTTACTATTA-TATTTTATAATTAATTTTCAGTAAAGAACAAAATTTCATCAA
CACATATTTCAAAAACATGTTCACGAATTTACATAAGTTTTTTCAAATTCTAAAAAATG-TTAACGAATA-CCAAAAATG
TTCTAATATATGGTGAACAATGCTTTATATGACATGATGAATCCACTTTCTTTTACACTTCTGTATCTTACTCTATCTTG
TTTTTTAGTATTATCTAAAATAACTGATGAATTATGAATTTTCCATAACTTAGGTAAATGCTTTACCAACATATGTAGTG
TAGTAAAAAAAATGGAATTTAACTCTTTCATGCTTACTTTAACTAGTTATTTTGGTTTTCTATTGGCTGCTTTAACTATA
ACCCCAGCTCTATTTATTGGCTTGAACAAGATACGCCTTATTTGAATTGACTGAATAATTATAATTCAGAAAAGAAAAAT
CTTTCTTTGGGATTCCTGGCACTAAATACACACT-A--TTTTTTTCCAATACACACTGAACATTGTTTTTGATATACATG
AACTTTTTAATATACGATGAACTAAAAGTGAA--CTTTTTTATATACATTGAACTAAAAGCGAACAGGAAAAAACAAAAT
AGATAAAATAGATAAATAACAAGAC--------AAAA-AA---CACATTTTGATTTGC-TTTAAAAAA-TTGATCAACAT
GAACAATTTTAGAAAAATGAACTAATTTACAAATTTTGAAACATGTATTGAAACTTGTGAATTTATGAACAAAC-AAAAA
-TTATCAGAATATGAAAAACAATGAGATCAACTTTTGAAAAATAGAAAAAT--AAAAAGGAGATGAAGAACAATGAAGAA
ACATGATAAATAAAAAAGCAGAAAGAACATGAAGAAAA-TGAAACAAAAC----AAAAAAGGTATCCTAACTACTTGGGC
CGGCTCATCTGCAGTTTGTTCGCTGACTATGGTGGACTTGAAACTAGG-AAAAAAATATTGGACCCCCAATGGCAAGTCG
AGGGTGGACTCTCAATTGGGAACAAAAAAAGGTTGGGCCCGAGTTGCGAGTCGAGTTTGGACTTGCAACTGGGGAC-AA-
AAATGGTTGGACCCTAATTGCGAGTCAAGGGTGGACTTGCGGCTGGGACTAGAAAGGGTCGAACCCCAGTTGCGAGTCGA
CGGTGGACTTGCAACTGGGGTAAAAGGTCGGCCCCAGTTACGAATCGAGGGTGGACTCGCAATTAGGACTAAA-AAATGT
CGGGCACCAGTTGCGAGTCAAGGGTGAACTTGCAACTCAGAAAAAAA---GGTTCAGCTGTAGTTGCGAGTCGA-GGATG
GACTTGCAACTCGGACAGAAA-ATGTTGGGCCCCAGTTGCGAGTCGAGGACGAACTTGCAACTCAGACAAAAAAG-GTTG
GGCCCTAGTTGCGAGTCGAGCATGGACTTGCAACTC
>chr2B_303
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------AGAGTCCGTCTATG---C
ATCTAGATATGACATGATATCTCATATCTAAGT--------------------TT-------------------------
TC-TTTTCCTGTTTGTTTGA-TTTAATTTGTCAAAACCCAAAACTGAAAACTACGTCATCGTGCGTCCGCCTTG-CTGAC
CGGCCTATAT--GCAAATCTGTTCACTAGCTTTCCTCAT-----------AAAA--AAATCTGGTTGCTAGCTATCCGTA
CAAGGAA-----------------CCTGATTGCTAGCTCGTCCTGGAAAACAAAATGATCGCTAGTGCTA-CATCGACTT
GTTAGCTTTTGCCTCTGATCATTATACATTTACAAGGACATCCCCCATAGCTAGCTTCTAGGCTACCAACGATTTATTTT
ATTTTTTGTCTATTGGTTTTTGCGTTTTTCACTATTA-TATTCTGTAATTAACTTTCAGTAAAGCATAAAATTTCATCAA
CACATATTTCAAAAACATGTCTACGAATTTACATAAGTTTTTTCAAACTATAAAAAATG-TTAACGAATACCCAAAAATG
TTCTAATATATGGTGAACAATGCTTTAATATATG----------------------------------------------
--------------------------------------------------------------------------------
-----------------------------ATGATCATTTT----------------------------------------
--------------------------------------------------------------------------------
---------------------CT---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>chr4D_306
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------GTCCGTCTATGTCAC
ATCTAGTTGTGAGATAATATCTCACATCTAAGT--------------------TTATTGTTTCCTGTTTGTTTGTCTTGT
TTGTTGTCCTGTTTGTTTGATTTTAATTTGTCAAAGCCCAAAACTAAAAACTACCTC---GTGCGTCCGCCTTG-ATGAC
CGGCCTATACGAGCAAATCTGGTCACTAGCT-----CCCCCCATTTA---AAAA--AACCCTGGTTGCTAGCTACCTGTA
CAAGGAA-----------------CCTGATCGCCAGCTTTTTCTGGAAAACAAAATGATCGCTAGTGCTA-AATTGACTT
GTTAGCTTTTGCCTCTGATCATTATACATTTACAAGGACATCTTCCATAGCTAGCTTCTAGGCTACCAACGGTTTATTTT
ATTTTTTGCCTATTGGTTTTTGCGTTTTTCACTATTA-TATCTTGTAATTAATTTCCAGTAAAGTACAAAATTTCATCAA
CACATATTTCAAAAACATGTTCACGAATTTACATAAGTTTTTTCAAACTATAAAAAATG-TTAACGAATA-CCAAAAATG
TTCTAATATATGGTGAACAATACTTTAATATATG----------------------------------------------
--------------------------------------------------------------------------------
-----------------------------ATGATCATTTT----------------------------------------
--------------------------------------------------------------------------------
---------------------CTGAATACACACTAA----TTTTTCCAATACACACTGAACATTGTTTTTGATATACATG
AACTTTTTTATATACGATGAACTAAAAGCG-AACCTTTTTTATATACATTGAACTAAAAGCAAACAGAAAAAAACAAA--
------AATAGATAAATAAGAAGAGAACAAAAAAT-A-AA---CACATTTTGATTTGCTTTTAAAAAA-TTGATCAACAT
GAACAATTTTAGAAAAGTGAACTAATTTACAAATTTTGAAACATGTATTGAAACTTGTGAATTTATGAAGAAAC-AAAAA
-ATACTAGAATATGAAAAA-AATGAGATTAACTTTTGAAAAATCGAAAAAT--AAAAAGGAGATGAAGA-CAAAGAAGAA
AAATGATAAATAAAAAAGCAGAAA-AACATGAAGAAAA-TGAAACAAAAC---AAAAAATGGTATCCTAGCTACTTGGGC
CGGCTCATGTGCAGTTTGTTCGCTGACTAGGGTGGACTTGAAACAAGGAAAAAAAATATTGGATCCCCAATGGCAAGTCG
AGGGTGGACTCTCAATTGGGAATAAAAAA-GGTCATGCCCCAGTTGCAAGTCGAGTTTGGACTTGCAACTAGGGAC-AA-
AAATGGTTGGACCCTAATTGCGAGTCAAGGGTGGACTTGCAGCTAGG-CTAGAAAAGGCCGAGCCCCAGTTGCGAGTCGA
CGGTGGACTTGC-ACTTGGGAAAAAGGTCGGCCCCAGTTGCGAATCGAGGGTGGACTCGCAATTGGGACTAAA-AAATGT
CGGGCACCAGTTGCGAGTCGACGGTGGACTTGCACTTGGGAAAAAGGTCG------GCCCCAGTTGCGAGTCGA-GGGTG
GACTCGCAACTCGGACAAAAA-ATGTTGGGCCCCAGTTGCGAGTCGAGGACGAACTTGCAACTCGGACATAAAAG-GTTG
GACCCTAGTTGCGAGTCGAG----------------
>chr7D_308
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------CCGTCTATGTCAC
ATCTAGATGTGAGATAATATCTCACATCTAAGTATGATGTCAGCGCCACCTTTTTTCCCCC-------------------
TGTTTATCCTTTTTGTTTGATTTTAATTTGTCAATGCCGAAAACTAAAAACCTGCTCACCCTGCGTCCTTCTTGTGTGGC
TGGCCTGTAC--GCAAATCTGGTCACTAGCT-----CCC------TA---AAAA--CAATCTGGTCGCTAGCTACCCGTA
TAA--AA-----------------ACTGATCGCTAGCTTTTTCC-GAAAGAAAATTGATCGGTAGTGCTAACATCGATTT
GTTAACTGTTGCGTCCGATCGTTATACATT-ACAAGTACATCTCTCAGAACTAGCTTCTAGGCTACTAACGATTTTA---
---TTTTGTCTTTTGGTTTTTGCGTTTTTCACTATTATTATTTTATAATTAATTTTCAGTAAGGAACAAAGTTTGGTG--
-----------AAAACATGTTCACGAATTTACATAATTTGTTTAAA-TTAT-AAAAATG-TTAATGATTG-CCAAAAAAA
-TCTAATGTACGGTGAACAATCCTTTA-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>chr5B_313
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TATGTCAC
ATCTAGATGTGAGATAA--------------GTATAATATCAATGTCACCTTATT-------------------------
ATTTTGTCCTGTTTGTTTGATTTTAATTTATCAAAGCCCAAAACTAAAAACTACCTCATCGTGCGTCCGTGTTG-GTGAT
CGGCCTATAC--GCAAATCTGGTCACTAGCT-----CTCCTCA--TAAACAAAA--GAATCTGGTTGCTAGCTGCCCGTA
CAAGGAA-----------------CCTGATCGCTAGCTTTTTCTGGAAAACAAAATGATCGCTAGTGCTA-AATCGACTT
GTTAGATTTTGCCTCTGATCCTTATACATTCACAAGGACATCTCCCATAGCTAGCTTCTAGGCTACCAACGATTTGTTTT
ATTTTTTGCCTTTTGGTTTTTGTGTTTTTCACTATAA-TATTTTATAGTTAATTTCCAGTAAAGAACAAAATTTCATCAA
TACATATTTCAAAAACATGTACACGGATTTACATAAGTTTTCTCAAATTAT-AAAAATG-TTAACGAATA-CCAAAAATG
TTCTAATATATGGTGAACAATGCTTTAATATATG----------------------------------------------
--------------------------------------------------------------------------------
-----------------------------ATGATCATTTT----------------------------------------
--------------------------------------------------------------------------------
---------------------CT---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>chr6B_324
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---TAGATGTGAGATAATATCTCATATCCA--TTTTTTTTGTCC-------TATT-------------------------
TGTTTGTCTGGTTTGTTTGATTTTAATTTGTCAAAGCCCAAAACTACAAACTACCTCGTCGTGTGTCCGCCTTG-GTCAC
CAGCCTATAT--GCAAATCTGGTCACTACGT-----CCCCTCG--TA---AAAA--AAATCTGGTTGCTAGCTACCCGTA
CAAGGAA-----------------CCTGATCGCTAGCTTTTTCTGGAAAACAAAATGATCGCTAGTGCAA-AATCGACTT
GTTAGCTTTTGCCTCTGATCATTATACATTTACAAGGACATCTCCCATAGCTAGCTTCTAGGCTACCAACGATTTATTTT
ATTTTTTGCCTTTTGGTTTT-GCATTTTTCACTATTA-TATTGTATAATTAATTTTCAGTAAAGAACAAAATTTTATCAA
CACATATTTCAAAAAC-------CGAATTTACATAAGTTTTTTCAAATTGTAAGAAAATTTTAACGAATA-CCAAAAATA
TTCTAATATATGGTGAACAATGCTTTAATATATG----------------------------------------------
--------------------------------------------------------------------------------
-----------------------------ATGATCATTTT----------------------------------------
--------------------------------------------------------------------------------
---------------------CTGAATACACACTA-TTTTTTTTTCCAGTACACACTGAACATTGTTTTTGATATACACG
AACTTTTTAGTATACGATGAACTGAAAGTGAA--CTTTTTTATATACATTGAACTAAAAGTGAACAGGAAAAAACAAAAT
AGAT-AAATAGATAAATAACAAGAGAACAAAAAAT-A-AA---CACATTTTGATTTTCTTTAAAAAAA-TTGATCAACAT
GAACAATTTTAGAAA-GTGAACTAATTTAAATTTTTTGAAACATGTATTGAAACTTGCGAATTTATGAACAAACAAAAAA
-ATATCAGAATATGAAAAAAAATGATATCAACTTTTGAAAAATAGAAAAAT--AAAAAGGAGATGAAAAACAATGAAGAA
ACATGATAAATAAAAAAGCAGAAAGAACATGAAGAAAA-TGAAACAAA-C--AAAAAAAAGGTATCCTAACTACTTGGGC
CGGCTCATCTGCAGTGTGTTCGCTGACTAGGATGGACTCGAAACTAGGAAAAT-AATATTGGACCCCCAATGGCAAGTCG
AGGGTGGACTCTCAATTGGGAACAAAAAA-GGTCGGGCCCCAGTTGCGAGTCGAGTTTGGACTTGCAACTGGGGAC-AA-
AAATGGTTGGACCCTAATTGCGAGTCAAGGGTGGACTTGCAGCCGGGACTAGAAAGGGTCGAGCCCCAGTTGCGAGTCGA
TGGTGGACTTGCAACTAGGGAAAAGGTCGTCA-CCAGTTACGAAACGACGGTGGACTCGTAACTAGGACTAAAAAAATGT
CGGGCACCAGTTGCGAGTCGAGGGTGAACTTGCAACTCGG-AAAAAC---GGTTGAGCTGTAGTTGTGAGTCGA-GGGTG
GACTTGCAACTCGGGCAAAAA-ATGTTGGGCCCTAGTTGCGAGTCGAGGACGAACTTGCAACTCAGACAAAAA-G-GTTG
GACCCTAGTTACGAGTCGAGTGTGGACTTTCAACTC
>chr7D_337
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------TATGTCACATCTAAGTTTTTTTTGTCC-------TATT-------------------------
TGTTTGTCCTGTTTGTTTGATTTTAATTTGTCAAAGCCCAAAACTAAAAATTACCTCGTCGTGCATCCGCCTTG-GTCAC
CAGCCTATAC--GCAAATCTGGTCACTAGCT-----CCCCTCG--TAAA---AA--AATTCTAGTTGATAGCTACCCGTA
CAAGGAA-----------------CCTGATCGCTAGCTTTTTCTGGAAAACAAAATGATCGCTAGTGCTA-AATCGACTT
GTTAGCTTTTGCCTCTGATCATTATACATTTACAAGGACATCTCCCATAGCTAGCTTCTAGGCAACCAATGATTTATTTT
ATTTTTTGCCTTTAGGTTTTTACGTTTTTCACTATTA-TATTTTATAATTAATTTTCAGTAAAGAACAAAATTTCATCAA
CACATATTTCAAAAACATGTTCACGAATTTACATAAGTTTTTTCAAATTATAAAAAATG-TTAACGAATA-CCAAAAATG
TTCTAATATATGGTGAACAATGCTTTAATATATG----------------------------------------------
--------------------------------------------------------------------------------
-----------------------------AAGATCATTTT----------------------------------------
--------------------------------------------------------------------------------
---------------------CTGAATACACACTAA--TTTTTTTCCAATACACATTGAACATTGTTTTTGATATACATG
AACTTTTTAATATACGATGAACTAAAAGTG-AAC--TTTTTATATACATTGAACTAAGAGCGAACAGGAAAAAGCAAAAT
AGAGAAAATAGATAAATAACAAGAC--------AAAA-GA---CACATTTTGATTTGC-TTTAAAAAA-TTGATCAACAT
GAACAATTTTAGAAAAATGAACTAATTTACAAATTTTGAAACATGTATTGGAACTTGTGAATTTATGAACAAACAAAAAA
-TTATCAGAATATGAAAAACAATGAGATCAACTTTTGAAAAATAGAAAAAT--AAAAAGGAGATGAAAAACAATGAAGAA
ACATGATAAATAAAAAAGCAGAAAGAACATGAAGAAAA-TGAAACAAAAC----AAAAAAGGTATCCTAACTACTTGGGC
CGACTCATCTGCAGTTTGTTCGCTCACTAGGGTGGACTTGAAACAAGGAAAAAAAATATTGGACCCCCAATGGCAAGTCG
AGGGTGGACTCTCAATTGGGAACAAAAAA-GGTTGGGCCCCAGTTGCGAGTCGAGTTTGGACATGCAACTGGGGACAAA-
AAATGGTTGGACCCTAATTGTGAGTCAAGGGTGGACTCGCAGCTGGGACTAGAAAGGGCCGCACCCCAGTTGCGAGTCGA
CGGTGGACTTGCAACTAGGGTAAAAGGTTGGCCCCAGTTACGAATCGAGGGTGGACTCGCAATTAGGACT--AAAAATGC
CGGGCACCAGTTGCGAGTCGAGGGTGAACTTGCAACTCGG--AAAAAA--GGTTCAGCTGTAGTTGCGAGTCGA-GGGTG
GACTTGCAACTCGGACAAAAA-ATGTTGGGCCCCAGTTGCGAGTCGAGGACGAACTTGCAACTCAGACAAAAAAG-GTTG
GACCCTAGTTGCGAGTCGAGCGTGGACTTGCAACTC
>chr7A_354
TTTTTT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------TCC-------TGTT-------------------------
TGTTTGTCCTGTTTGTTTGATTTTAATTTGTGAAAGCTCAAAACTAAAAACTACCTCGTCCTGCGTCTGCCTTG-GTGAC
CGGCGTATAT--GCAAATCTGGTCACTAGCT-----CCCCTCA--TAAA---AAGAAAATCTGCTTGCTAGCTACCCATA
CAAGGAA-----------------CCTGATCGCTAGCTTTTTCTGGAAAACAAAATGATCACTAGTGCTA-AATCGACTT
GTTAGCTCTTGCCTCTGATCATTATACATTTACAAGGACATCTCCCATAGCTAGCTTCGAGGCTACCAACGATTTATTTT
ATTTTTTGCCTATTGGTTTTTGTGTTTTACACTATTATATTTATATAATTAATTTTCAGTAAAGAACAAAATTTCATCAA
CACATATTTCAAAAACATGTTCATGAATTTACAAAAGTTTTTTCAAACTATAAAAAATG-TTGACGAATA-CCAAAAATG
TTCTAATATACGGTGAACAATGCTTTAATATATG----------------------------------------------
--------------------------------------------------------------------------------
-----------------------------ATGATCATTTT----------------------------------------
--------------------------------------------------------------------------------
---------------------CTGAATACACACTA-TTTTT-TTCCCAATCCACACTGAACATTGTTTTTGGTATACATG
AACTTTTTTATATACGATGAACTAAAAGCG-AACTTTTTTTATATACATTGAACTAAAAGTGAACAGGAAAAAACAAA--
---TAAAATAGATAAATAAGAAGAGAACAAAAAAAATAAA---CACATTCGGATTTGC-TTTTAAACTTTTTATCAGCAT
GAACAATTTTAGAAAAATGAACTAATTTACAAATTTTGAAACATGTATTGAAACCTGTGAATTTATGAACAAACAAAAA-
-TTACCAGAATATGAAAAA--ATGAGATCAACTTCTGAAAA-GTAAAAAATAAAAAA-GGAGATGTAAAACAATGAAGAA
AAATGATAAATAAAAAAGCAGAAA-AAGATGAAGAAAA-TGAAGCAAAACAAAAAA----GGTGTCCTAGCTGCTTGGGT
CGGCTCATCTTCAGTTTGTTCGCCGACTAGGGTGGACTTGAAAGTAGG-AAAAAAATGTTGGACCCCCAATGGCAAGTCG
AGGGTGGACTCTCAATTGGGAATAAAAAA-GGTCGGACCCCAGTTGCGAGTCGAGTTTGGACTTGCAACTGGCGAC-GA-
AAATGGTTGGACCCTAATTGCGAGTCAAGGGTG-ACTTGTAGCTGGGACTAGAAAAGGTAGAGCTCTAGTTGCGAGTCGT
CAGTGGACTTGCAACTGGG-AAAAAGGTCGGCCCCAGTTGCGAATCGAGGGAGGACTAGCAATTGAGACTAAA-AAATGT
CGGACACTAGTTGCGAGTCGAGGGTGAACTTGCAACTCGGACAAAAAA--GGTTGAGCTCTAGTTGCGAGTCGA-GAGTG
GACTTGCATCCCGGACAAAAA-ATGTTGGGCCCCAGTTGCGAGTCGATGGCGAACTTGCAACTTAGACAAAAAAG-GTTG
GACCCTAGTTGCGAGTCGAGGGTGGACTTGCAACTC
>chr7A_1153
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CTAAATACACACTAA--TTTTTTTCCAATACACACTGAACATT-TTTTTGATATACATG
AACTTTTTAATATATGATGAACTAAAAGTGAAAA--TTTTTATATACATTGAACTAAAAGCGAACAGGAAAAAACAAAAT
AGAGAAAATATATAAATAACAAGAC--------AAAAAAA---CACATTTTGATTTGC-TTTGAAAAA-TTGATCAACAT
GAACAATTTTAGAAAAATGAACTAATTTACAAATTTTGAAACATGTATTGAAACTTGTGAATTTATGAACAAACAAAAAA
-TTATCAGAATATAAAAAACAATGAGATCAACTTTTGAAAA-TATAAAAAT--AAAAAGGAGATGAAAAACAATGAAGAA
ACATGATAAATAAAAAAGCAGAAAGAACATGAAGAAAA-TGAAACAAAACAAAAAAAAAAGGTATCCTCACTACTTGGGC
CGGCTCATCTGCAGTTTGTTCGCTGACTAGGGTGGACTTGAAACTAGG-AAAAAAATATTGGACCCCCAATGGCAAGTCG
AGGGTGGACTCTCAATTGGGAACAAAAAA-GGTCGGGCCCCAGTTGCGAGTCGAGTTTGGACTTGCAACTGGGGAC-AA-
AAATGGTTGGACCCTAATTGCGAGTCAAGGGTCGACTTGCAACTGAGACTAGAAAGGGTCGAACCCCAGTTGCGAGTCGA
CGGTGGACTTGCAACTGGGGTAAAAGGTCGGCCC-AGTTACGAACGGAGGGTGGGCTCACAATTAGGACTAAA-AAATGC
CGGGCACCAGTTGCGAGTTGAGGGTGAACTTGCAACTCA---AAAAAA--GGTTCGGCTATAGTTGCGAGTCGA-GGGTG
GACTTGCAACTCGGACAAAAA-ATGTTGGGCCCCAGTTGCGAGTCGAGGACGAACTTGCAACTCAAACAAAAAAATGTTG
GACCCTAGCTGCGACTCGAGCGTGGACTTGGAACTC
>chr7A_1153
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---------------------CTGAATACACACT-A--TTTTTTCCCAATACACACTGAACATTGTTTTTGGTATACATG
AACTTTTTTATATACGATGAACTAAAAGCGAA--CTTTTTTATATACATTGAACTAAAAGTGAACAGGAAAAAACAAAA-
----AAAATAGATAAATAAGAAGAGAACAAAAAAA-TAGA---CACATTTGGATTTGC-TTTTAAATTTTTTATCAACAT
GAACAATTTTAGAAAAATGAACTAATTTACAGATTTTGAAACATGTATTGAAACTTGTGAATTTATGAACAAACAAAAA-
-TTACCAGAATATGAAAAG--ATGAGATCAACTTTTGAAAA-ATAAAAAAATAAAAAAGGAGATGTAAAACAATGAAGAA
AAATGATAAATAAAAAGCAG--AAAAACATGAAGAAAA-TGAAGCAAAACA---AAAAC-GGTATCGTAGCTACTTGGGC
CGGCTCATATGCAGTTTGTTCACCGACTAGGGTGGACTTGAAACTAGG-AAAAAAATGTTGGACCCCCAATGGCAAGTCG
AGGGTGGACTCTCAATTGGGAATAAAAAA-GGTCGGACCCCAGTTGCGAGTCGAGTTTGGACTTGCAAATGGCGAC-GA-
AAATGGTTGGACCCTAATTGCGAGTCAAGGGTGGACTTGTAGCTGGGACTAGAAAAGGTCGAGCCACAGTTGCGAGTCGT
CAATGGACTTGCAACTGGGGAAAAAGGTCGGCCCCAGTTGCGAATCGAGGGTGGACTAGCAATTGGGACTAAA-AAATGT
CGGACACCAGTTGCGAGTCAAGGGTGAACTTGCAACTCAGACAAAAAA--GATTGAGCTCTAGTTACGAGCCGA-GAGTG
GACTTGCATCTCAAACAAAAA-ATGTTGGGCCCCAGTTGCGAGTCGACGGCGAACTTGCAACTCAGACAAAAAAG-GTTG
GACCCTAGTTGCGAGTCAAGGGTGGACTTG------
>chr5B_1158
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--------------------------TACACACTAATTTTTTTTTCCAATTCACACTGAACATTGTTTATGATATACATG
AACTTTTTAATATACGATGAACTAAAAGTGAA--CTTTTTTATATACATTGAACTAAAAGCGAACAGGAAAAAACAAAAT
AGAGAAAATAGATAAATAACAAGAC--------AAAAAAAATACACATTTTGAGTTGC-TTTAAAAAA-TTGATCAACAT
GAACAATTTTAGAAAAATGAACTAATTTACCAATTTTGAAACATGTATTGAAACTTGTGAAATTATGAACAAACAAAAAA
-TTATCAGAATATGAAAAACAATGAGATCAACTTTTGAAAA-ATAGAAAAATAAAAA-GGAGATG-AAAAAAATGAAGAA
ACATGATAAAT-AAAAAGCAGAAAGAACATGAAGAAAA-TGAAACAAAACC---AAAAAAGGTATCCTAACTACTTGGGT
CGGCTCATCTGTAGTTTGTTCGCTGACTAGGGTGGACTTGAAATTAGG-AAAAAAATATTGGACCCCCAATGGCAAGTCG
AGGATGGACTCTCAATTGGGAACAAAAAA-GGTCGGGCCGCAGTTGCGAGTCGAGTTTGGACTTGCGACTGGGGAC-AA-
AAATGGTTGGACCCAAATTGCGAGTCAAGGGTGGACTTGCAGCTGGGACTAGAAAGGGTCGAACCCCAGTTGTGAGTCGA
CGATGGAATTGCAACTAGGGTAAAAGGTCGGCCCCAGTTACGAATCAAGGGTGGACTCGCAATTAGGACTAAA-AAATGT
CGGGCACCAGTTGCGAGTCGAGGGTGAACTTGCAACTCGGAAAAAA-----GTTCAGCTGTAGTTGCGAGTCAATGGGTG
GACTTGCAACTCGGACAAAAAGATGTTGGGCCCCAGTTGCGAGTCG----------------------------------
------------------------------------
>SNPs
SSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------
--------------------------------------------------------------------------------
-S----------------------------------S-----------------------S-------------------
----------------------------S---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
------------------------------------------------------------------S-------------
--------S---------------------------------S-------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
--------------------------------------------------------------------------------
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------------------------------------------------------------------S-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------S--------------------------------------S---------S
--------------------------------------------------------------------------------
-----S--------------------------------------------------------------------------
------------------------------------
>forward_136
--------------------------------------------------------------------------------
------------------------------------TGGATTGGTTGGATTGGCGA------------------------
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------------------------------------
>reverse_1667
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------------------------------------------------------------------ATAACTACTTGGGC
CGGCTC--------------------------------------------------------------------------
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------------------------------------
