>input_sequence_87623
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-----------------------ATGAAGATTGGAGGCCAAGGGAAGCTCAACAGGGCTTTCAGAGAGAAGAGGGCTAGG
TTCTACATCTTCCGCCGCTGCGTCGTCATGTTGCTCCGATGGAGCGACTGA-----------------------------
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>chr5A_1_TraesCS5A01G179200
GTTGCATTCAAAATTATTCAGTTTTTAAGATGGATCAACAAAACAACCTGATGTTTGAGTAAAATGATCTGAAGTACGTG
GAGCACTCATATACTTGACTCCCCACTCAAACAATTTTCTGAGTCCAAGAATTACGATGTGTTCATATCCTACTGCTGTC
CTATGCTGCCGACTTGATTGCTGTCACCAGGATGTGTATCAAACATAGCTGTA--------------------------A
TGACTAATGGAAGTACCACATTGGACATAGCTCCATCCCACTGCATGGAAAGTGAAATCAGACAAGTCTCCTAGAAGTCC
AAACTTTAAGCCTATTGTAGAGCATTTCATAAATGCACTACTACCAGGCGTTATCATCTGTCAACAATAATTTGAATTAG
TCAGGACTGAGAACTCCATGCCAG--------------------------------------------------------
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TGCACGGAAAGTGGAATCAGACAAGTTTCATAGAAGTCTGAGTTTTACCCCTAGCTTCGTCGTTTGTGTAGAGCATTTCC
T----------------------------------------------------------AATTGCCGAATCACCAGGTTT
TAACACCTGTTAGCGGTAAGCTTAATCAGTTCTACTCTATGCATCAAGGTGACCTTCCTGGAAGTTTCCCTCCAAGCATT
GGTAGGATATCTTTTGGAGTTCCTTTCTTGGAGTCACTAAACAACCTTTCATCTGCCTTTGTTGCATGGATGGATGGATG
ACCACTTGATCTTGTCTGTTTTTACCACTGTAATTCTCTGGGGTGGTCATGGCCATTGCATACTTTAAGCCTTTTGCTAG
CTCCTAAGCTCCAAGCAAGTAGAATAATGAGTAGGATAAGTTTAGGGTCAGAAGTGTGCCTCCTAGTGCGTAAACAAACT
GCCTGCATGTGGGGGGTATGATGTCCTTTTGATATGGCATATCATCCCTTGTGTGCCTCTATATAAAGGCCCCCCCACTC
AACATCCCTCTCATCTCATACCACACCAGCCACTAGTCTACAAGCTGTCTGCCTAGCTGCA---CTCCTCTCTTTGCCTT
GCACCAAGCTTCCTGAGCATACCATGAAGATTGGAGGCCAAGGGAAGCTCAACAGGGCTTTCAGAGAGAAGAGGGCTAGG
TTCTACATCTTCCGCCGCTGCGTCGTCATGTTGCTCCGATGGAGCGACTGATGGG--TCTCCATGGCGGCTCTTGTTTTT
TCCTTCCATTCTAGGATTTTCTTTTTTGGCACAGCCATTTTTTCAGGGTTAGAGTAGTTTAGGTGTAGTTGCTCTGTATA
GGCTAGACTTCATTGTTTGAGGTCCTTTTTTCTCTCCATGGTTGCCTGCTGTCACAGGCAAAGGGGGAGAGATCCAACTC
AGTAGTCTGAGACTGTCATCTTCTTGTACGACTGGAG-----AAAGATTGATGTGAAGATCATTTCTTACCTGTGCTTCA
ACTTGATGTTATACTGTTGATGATAATTATCAATTGGCAAGTTGATGACAACCTGAGATTGATAACTCTTTACCGCTTCC
TCTTAATGAATAGTAGCAGCTCTCCTGCTATCTTTCAAAAAAGATAATTATCAATTGGCAAGTTGATGACAATCTGAGAT
TGGAACAATTGTACTTCCGCGAGCGAGCTATACCTTTTTTTAACGGTTTGAAGTGATCCGTATCTGATGCTTTGTGCTTT
TGATGGAAAGTTGGAATCAGTCTGTGTGGCCACACTTTTTTGCGGTCGTATCTCCATGCAATTGCACCTTTTCCCTGGTC
CTTTGAGAGGTGACTAACCTGTTGTTGTTCTCTTGATATGCTGCTGTCTATGCCATTGTTGTTCTCTTGATATGATGATG
CTGCTCTTTCAGGAACTCAACCGTTTCATGTGAAACCATTGCAACTCCAACATGCCCTAAGCTTGGTGCATATCTCACGA
ATAATGGAATTGCCATAGAGGAGAACTGAGATATTGTGCATACAGTCCTTCTGAGAAAGACAACTAGTAGCTGGTACACC
ACTCCAGCAAGGGTCAGGAATCCACTACGGAAGCTCAATCAGA----------GTACC---------------TGAAATC
TTGACTGTTGTACTGGACCATGACATGCATGAGTTAATGTCAATGGGGAAACCTCGACTGAACCATGCATG---GCACTG
CAACATCTGTGTTATGCATTGCTCAGTGCTTCAGGCGCTGGTGCTT
>chr5B_1
GTTGCATTCAAAATTATTCAGTTTTTAAGATGCATCAACAAAACAACCTGTTGTTTGAGTAAAATGATCTGAAGTACATG
GAGCACTCATATACTTGACTCC--ACTCATACAATTTTCGGAGTCCAAGAATTATGATGCGTTCATATCCTACTGCTGTC
CTATGCTGCCGACTTGATCGCTATCACCAGGATGTGTATCAAACATAGCTGTCACCAGGTGTGTATCAAACATATCCGTA
TGACTAATGGAAGTACCACATTGGACATAGCTTCATCCCACTGCATGGAAAGTGAAATCAGACAAGTCTCCTAGAAGTCC
AAACTTTATGCCTATTGTAGAGCATTTCATAAATGCACTACTACCAGGCCTTAACATCTGTCAAAAATAATTTGAATTAG
TCGGGACTGAGAACTCCATGACAG--------------------------------------------------------
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TGCACGGAAAGTGGAATCAGACAAGTTTCATAGAAGTCTGAGTTTTACCCCTAGCTTCGTCGTTTGTGTAGAGCATTTCC
TAACGTCGTTCGTGTGTCTGGTGCTTTATAATATAAAGCGGGGGAAACCCTTTTTCGGTAATTGCCGAATCACCAGGTTT
TAACACCTGTTAGCAGTAAGCTTAATCAGTTCTACTCTATGCATCAAGGTGACCTTCCTGGAAGTTTCCCTCCAAGCATT
GGTAGGATATCTTTTGGAGTCCCTTTCTTGGAGTCACTAAACAACCTTTCATCTGCCTTTGTTGCATGGATGGATGGATG
ACCACTTGATCTTGTCTGGTTTTACCACTGTAATTCTCTGGGATGGTCATGGCCATTGCATACTTTAAGCCTTTTGCTAG
CTCCTAAGCTCCAAGCAAGTAGAATAATGAGTAGGATAAGTTTAGGGTCAGAAGTGTGCCTCCTAGTGCCTAAACAAACT
GCCTGCATGTGGGGGGTATGATGTCCTTTTGATATGGCATATCATCCCTTGTGTGCCTCTATATAAAGGCCCCCCAACTC
AACATCCCTCTCATCTCATACCACACTAGCCACCAGTCTACAAGCTGTCTGCCTAGCTGCACTCCTCCTCTCTTTGCCTT
GCACCAAGCTTCCTGAGCATACCATGAAGATTGGAGGCCAAGGGAAGCTCAACAGGGCTTTCAGGGAGAAGAGGGCTAGG
TTCTACATCTTCCGCCGCTGCGTCGTCATGTTGCTCCGATGGAGCGACTGATGGG--TCTCCATGGCGGATCTTGTTTTT
TCCTTCCATTCTAGGATTTT-TTTTTTGGCACAGCCATTTTTTCAGGGTTAGAGTAGTTTAGGTGTAGTTGCTCTGTATA
GGCTAGACTTCATTGTTTGAGGTCCTTTTTTCTCTCCATGGTTGCCTGTTGTCACAGGCAAAGGGGGAGAGATCCAACTC
AGTAGTCTGAGACTGTCATCTTCTTGTACGACTGGAG-----AAAGATTGATGTGAAGATCATTTCTTACCTGTGCTTCA
ACTTGATGTTATACTGTTGATGATAATTATCAATTGGCAAGTTGATGACAATCTGAGATTGATGTTTCTTTACCGCTTCC
TCTTAATGAATAGTAGCAGCTCTCCTGCTATCTTTCAAAAAAGATAATTATCAATTGGCAAGTTGATGACAATCTGAGAT
TGGAACAATTGTACTTCCGCGAGCGAGCTATACCTTTTTTTAACGGTTTGAAGTGATCCGTATCTGATGCTTTGTGCTTT
TGATGGAAAGTTGGAATCAGTCTGTGTTGCCACACTTTTTGGCGGGCGTATCTCCATGCAATTGCGCCTTTTTCCTGGTC
CTTTGAGAGGTGACTGACCTGTTGTTGTTCTCTTGATATGCTGGTGTCTATGCCATTGTTCTTCTCTTGGTATGATGCTG
CTGCTCTTTCAGGAATTCAACTGTTTCATGTGAGACCACTGCAACTCAAACAGGCCCTAAGCTTGGTGCATATCTCACGA
ACAATGGAATTGCCATAGAGGAGAACTGAGATATTGTGCATACAGTCCTTCTGAGAAAGACAACTAGTAGCTGGTACACA
ACTCCAGCAAGGGTCAGGAATCCACTATGGAAGCTCAATCAGAGCTTGCCTTGGTACC---------------TGAAATC
TTGACTGTTGTACTGGACCATGACATGCATGAATTAATGCCAATGGTGAAACCTTGACTGAACCATGCATG---ACACTG
CAACATCTGTGTTATACATTGCTCAGTGCTTCAGGCGCCGGTGCTT
>chr5D_1
GTTGCATTCAAAATTATTCAGTTCTTAAGATGCATCAACAAAACAACCTGTTGTTTGAGTAAAATGATCTGAAGTACATG
GAGCACTCATATACTTGACTCCCCACTCAAACAATTTTCTGAGTCCAAGAATTATGATGTGTTCGTATCCTACTGCTGTC
CTATGCTGCTGACTTGATCACTGTCACCAGGATGTGTATCAAACATAGCTGTA--------------------------A
TGACTAATGGAAGTACCACATTGGACATAGCTCCATCCCGCTGCATGGAAAGTGAAATCAGACAAGTCTCCTAGAAGTCC
AAACTTTAAGCCTATTGTAGAGCATTTCATAAATGTACTACTACCAGGCGTTAACATCTGTCAAAAATAATTTGAATTAG
TCGGAACTGAGAACTCCATGCCAGTGCACGTAAAGTGGAATCAGACAAGTCTCCTAGAAGTCCAAACTTTAAGCCTATTG
TAGAGCATTTCATAAATGCAGTACTACCAGGCGTTAACATCTGTCAAGAATAATTTGAATTAGTCACAGCTCCATGCCAT
TGCACGGAAAGTGGAACCAGACAAGTTTCATAGAAGTCTGAGTTTTACCCCTAGCTTCGTCGTTTGTGTAGAGCATTTCC
----------------------------------------------------------TAATTGCCGAGTTACCAGGTTT
TAACACCTGTTACTGGTAAGCTTAATCACTTCTACTCTATGCATCAAGGTGACCTTCCTGGAAGTTTCCCTCCAAGCATT
GGTAGGATATCTTTTGGAGTCCCTTTCTTGGAGTCACTAAACAACCTTTCATCTGCCTTTGTTGCATGGATGGATGGATG
CCCACTTGATCTTGTCTGGTTTTACCACTGTAATTCTCTGGGGTGGTCATGGCCATTGCATACTTTAAGCCTTTTGCTAG
CTCCTAAGCTCCAAGCAAGTAGAATAATGAGTAGGATAAGTTTAGGGTCAGAAGTGTGCCTCCTAGTGCGTAAACAAACT
GCCTGCATGTGGGGGGTATGATGTCCTTTTGATATGGCATATCATCCCTTGTGTGCCTCTATATAAAGGCCCCCCAACTC
AACACCCCTCTCATCTCATACCACACTAGCCACCAGTCCACAAGCTGTCTGTCTAGCTGCACTCCTCCTCTCTTTGCCTT
GCACCAAGCTTCCCGAGCATACCATGAAGATTGGCGGCCAGGGGAAGCTCAACAGGGCTTTCAGGGAGAAGAGGGCTAGG
TTCTACATCTTCCGCCGCTGCGTCGTCATGTTGCTCCGATGGAGCGACTGATGGGTCTCTCCATGACGGATCTTGTTTTT
TCCTTCCATTCTAGGATTTT--TTTTTGGCACTGCCATT-TTTCAGGGTTAGAGTAGTTTAGCTGTAGTCGCTCTGTATA
GGCTAGACTTCATCATTTGAGGTCCTTTTTTCTC----------------------GGCAAAGGGAGAGAGATCCAGCTC
CGTAGTCTGAGGCTGCCATCTTCTTGTACGACTGGAGAAATTAAAGATTGATGTGAAGATCATTTCTTACCTGTTCTTCA
ACTTGATGTTATACTGTTGATGATAATTATT-------------------------------------------------
----------------------------------------------------AATTGGCAAGTTGATGACAATCTGAGAT
TGGAACAATTGTACTTCCGCGAGCGAGCTATACCTTTTTTTAACAGTTTGAAGTGATCCGTATCTGATGCTTTGTGCTTT
TGATGGAAAGTTGGAATCAGCCTGTGTGGCCACACTTTTTTGAGGGCGTATCTCCATGCAATTGCACCTTTTTCCTGGTC
CTTTGAGAGGTGACTGACCTGTTGTTGTTCTCTTGATATGCTGGTGTCTATGCCATTGTTGTTCTCTTGATATGGTGCTG
CC---CTTTCAGGAACTCAACTGTTTCATGTGAGACCATTGCAACTCAAACAGGCCCTAAGCTTGGTGCATATCTCACGA
ATAATGGAATTGCCATAGAGGAGAACTGAGATATTGTGCATACAGTCCTTCTGAGAAAGACAACTAGTAGCTGGTACACC
ACTCCGGCAAAGGTCAGGAATCCACTACGGAAGCTCAATCAGA----------GCTTGCCTTAGTACCTGAAATGAAATC
TTGACTGTTGTACTGGACCATGACA----TGAATTAATGCCAATGGTGAAACCTTGACTGAACCATGATGCATTACACTG
CAATAACCGTGTTATGCATTGCTCAGTGCTTCAGGCGCTAGCGCTT
>SNPs
--------------------------------S-----------------S--------------------------S--
------------------------------------------------------S-------------------------
------------------S-------------------------------------------------------------
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-----------------------------------------------------S----------S---------------
--S-----------------------------------------------------------------------------
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--------------------S-----------------------------------------------------------
------------------S-------------------------------------------------------------
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---------------------------------------------------------------------------S----
--------------------------S------S----------------------------------------------
----------------------------------------------------------------S---------------
---------------------------------------------------------------------S----------
--------------------S-----------------------------------------------------------
------------------------------------------------S-------------------------------
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---------------------------------------------------S-----------SSS--------------
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---------------------------------------------S--------------------------S-------
---------------S---------------------------S---------------------------------S--
---------------------S-----------S-------------S----S---------------------------
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--------------------------------S------S------S-------S-------------------S-----
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>forward_1154
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--------------CTCATACCACACCAGCCACT----------------------------------------------
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>reverse_2053
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----------------------------------------------------TGCCCTAAGCTTGGTGCATA--------
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