>input_sequence_87603
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-----------------------------------------------------ATGCTTACTCTCAAACTTTTTGTTTAT
ACTGTAGTGATATTCTTTGTTTCGCTCTTTATCTTTGGATTCTTATCTAATGACCCAGGACCGAATCCTGGAGAAAAGAA
GTAG----------------------------------------------------------------------------
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>chr5B_1_TraesCS5B01G089100
GGAACACAACGTCATAGAGATGTCATTTTTAGACCGGTCTATGATAAGCATGTTGTCGAGCCCCAAAGAGCTAATAACTC
ACACACCCGAGGTGGCCAGTCAGTGATAATGCTCATCGGTGATGACTGGCCAGTGGCGTGTTAGTGATGAGGGCCCGTGT
TGTCCACGTGTGTAGCAGTGAGCTGCGTCGCAGTCGCATAGGTTTTCATGAACTGGAGGTGTGTCTTGATAGTGTCCAAA
GGTTATAGTCATGATCACGGCTGCACTGGCATGCTTCGGCATGACCATGAGGGCGGGGTAGCTCATGAAATAGACGCGGC
CCGTGATGCGCCACATTGCATGACGCCCACCATAGCGCGCTTGGACAACATAGGCGATGATGGATAGGCCACAGTCGTGG
TACATGCCGTGGACATTGTTAGCAAGGAGGATACTCTTGATGGACTTGGTGTCGCCAGTGTAGCGTCATGTAGTGGAGTT
CAAGACTATGAGCACCGGATGATGACATCGACGAGATCCACACGATCTGCGCAGTGACGGGGTAGAGACACCTGCTGCGA
TGGAGGCGACAATAGACGTTACGGGCTCTGAGATGCCGAACTGGATGGTGGAGGATCCGACCAAGTTCTTGGAGTTCTTG
ATACCTAGCGTATGTGGTATGACGCGATGCGGAGATGAT-GGGGCATCCTATGATTGCGGCCCTACCCCTGTGTGGGTAT
ATTGGGAAGAGAGTGACAAAAAGGAACAAGGGATGTGGAAGGTTGGCGGCAGAGGCTACAGAGGTGAAAGCGAGCACGAC
TAGGCCAGAGAGGGAGAAGGAAGAGGCTACAGGGTAGAGGCGACGACGCTTGGGCGCTTCGAGCAGTAGGGCAGGAAATG
TGGAGGATTAAGGCGCGTGGGAAGGTGGGTTCT------TGT------TTGTTTTTGCCATTTTTTTGCTGAGAGTTTTC
TTTGTTTTTTTAAAGTGGGATGAGAAAGGAGAAAAAATCTTGGCGACTATGTAATGCTTACTCTCAAACTTTTTGTTTAT
ACTGTAGTGATATTCTTTGTTTCGCTCTTTATCTTTGGATTCTTATCTAATGACCCAGGACCGAATCCTGGAGAAAAGAA
GTAGACGACAAGTGCAAATCTTACATGAATCATGCCAAGCACAGAAGAAAAAGAGGGGCAAGGAAACTGTGAGCTATTTA
TTGTTACTTTCTTAAGAAATAGATAAAGGATGGCTTGTGGTCTATTTTCTTACATGAGCGATTTGGCAGATTAAACGAAA
AATTGACTACATAAT--------------------------------AATACAAACATCAACTCTTTTTTTTA-TACTCC
CTCCT----------ATTGATGCACACTTCGTACAACTTAATTGACATAAGGTGTACGAAGTGTGCATTAATTAATATGG
ATTAAAGGGAGTAACACTATTAATCTGTTGAAGATGTTCTAATCAAATGTAACGGTGAGAAGGGAAACCGGCAACAATTT
TGCCTCAAAGTTGAGGTCCCTCTTCTCATGCTTCATGTTTACTTCGCCAAAGAATCCACCTTAGCCTTAATCTCCGGAAT
CACCATGCTGCTTGGAGTACCATTTATGCAATCA---GTAGCCAAATGCACTGAAGGCAAGTTCAGATCAGAAGCGAGAG
AAAGTCCTGGGCCGAGTGCCATCGTCTTCAGATCACAAGTGACAAGTGTGGAGTCTAATTCACTGGGCGCAGCCAGGTCG
AGTTTCCGCCGCTTGGCTGCCTCCGGCCCATCACCGCATGGCGTCATCGCCTCGGCTTGTGCTCGGTCAATGGCACGTTG
CTCCTCGACGGAGGTCATTGCAAAGCGGCACACTGGGCAGCGACGGTTAAGGCGAAGCCGGTCGAAGATGCATCGCTGAT
GGAAGGAGTGGCCGCAGGGCATCGTCCTCAGCTTCTTTCTGTTAAACTGTGAATATTCTCATTGTAACTATCTGTTGTAA
CAGCTTTAGTCCATCCTACTTTGTAGGATCTCAGCGCTCGTGGCCTGCGTGCCATGCTTGTAGGAGCGCGTTACTCTCCT
CTGAGGAGGATAAATACATGTACTCTGTAACTGATTTGGTCATGCAAGGAAACATACAATTCAACTTGGTATCAGAGCTC
CAGGTTCCAC
>chr5D_1
GGAACACAATATCATAGAGCGATCATTTTTAGACTGGTTTGTGATAAGCATGTTGCCGAGCCCCAAAGAGCTAATAACTG
ACGCGCCCGAGGCGACCAGTTGGTGATAATGCTCATTAGTGATGCCTGGACAGTGGCGTGTTAGTGATGAGGGCCAGTGT
TGTCTGCGCGTGTAGCAGTGAGCTGCGCCACAGTCCCATCGGTTTCCATGAACTGGAGGTGTGTCTTGATAGTGTCCAA-
GGTTATAGTCACGATCACGGCCGCACCGGCATGCTTCGGCATGACCATGAGGGCAGGAGCTCTCGGAAC--AGATGCGGC
CTGTGATGCGCCATGTCGCAGGACGCCCACCATAGTGCGCTTGGACAACATATGCGATGATGGATAGGCCGCAGTCGTGG
TACATGCCGTGGACACCGTTAGCAAGGAGGTTCTTCTTGATGGACTCGGTGTCACCGGTGTAGCGGCATGTGGTGGAGTT
CAAGACTATGAGCACCAGATGATGACATCAACAAGATCCGCACTACCTGCGCAGTGACGGGGTAGAGACACCCGCTGCAA
CGGAGGCGAGAACCGACGCTACGGGCTCTGAGACGCCGAACTGGACGGTGGAGGATCCAACTGAGTTCTTGGAGTCCTCG
ATACCTAGCGTATGCGGTACGACGCGACGCGGAGATGATAGGGGCATCCTACGATTGTGGCCCTACCCATGGGTGGGTAT
ACTGGGAAGAGTGGGACAAACAAGAACAAGGGATGTGGAAGGTTGGCGGCAAAGGCTATAGAGGTGAAAGCGAGCATGAC
TAGGCCAGAGAGGGAGAAGGAAGCGGCTACGGGGCAGAGGCGGCGGCGCTTGGGCGCTTGGACCGGTAAGGCGGGGAAGG
TGGAGGATTAAGGCGCGCGGGATGGTGGGTTTT------TGTTTGTGTTTG------CGATTTTTTTACTGAAGGTTATC
TTTGTTTTTTAG-AGTGGGATGCGGAAGGAGATG----------------------------------------------
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------------------------------------------------------------------------AAACGAAA
AATGACTACGTAGTACATACAAACATCAACGCCCTTTTAAGTTTCAAAAAAGAAACATCAACTTCTTTTTTTA-TATTCC
TTCATATCCATATTAATTGACGCACACTTAGTACAACTTAGAG-------------------------------------
----------GTAACACTATTAATTTGTTGGAGATGCTCTAATCAAATGTAACGGTCAGAAGGGAAG-------------
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CACCATGCTGCTTGGAGTACCATTTATGCAATCATCAGTAGGCAAATGCACAGAAGGCAAGTTCAGATCAGAAGCGTCAG
AAAGTCCTTGGCCGAGTGCCATCGCCTTCAGATCACAAGTGACAAGTGTGGAGTCTAATTCACTGGGCGCAGCCAGGTCG
AGTCTCCGCCGCTTGGCTGCCTCCGGCCCATCACCGGATGGCACCGCCGCCTCGGCTTGTGCCCGGTCAATGGCACGTTG
CTCCTCGACGAAGGTCATCGCAAAGCGGCACACTGGGCAGCGACGGTTAAAGCGAAGCCGGTCGAAGATGCAGCGCTGAT
GGAAGGAGTGGCCGCACGGCATCGTCCTCAGCTTCTTTC-----------------------------------------
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>chr5D_1
GGAACACAATATCATAGAGCGGTCATTTTTAGACCGGTTTGTGATAAGCATGTTGCCGAGCCCCAAAGAGCTAATAACTG
ACGCGCCCGAGGCGACCAGTTGGTGATAATGCTCATTAGTGATGCCTGGACAGTGGCGTGTTAGTGATGAGGGCCAGTGT
TGTCCGCGCGTGTAGCAGTGAGCTGCGCCACAGTCCCATCAGTTTCCATGAACTGGAGGTGTGTCTTGATAGTGTCCAA-
GGTTATAGTCACGATCACGGCCGCACCGGCATGCTTCGGCATGACCATAAGGGCAGGAGCTCTCGGAAC--ATATGCGGC
CTGTGATGCGCCATGTCGTAGGACGCCCACCATAGTGCGCTTGGACAACATATGCGATGATGGATAGGCTGCAGTCGTGG
TACATGTCGTGGACACCGTTAGCAAGGAGGTTCTTCTTGATGGACTCGGTGTCGCCGGTGTAGCGGCATGTGGTGGAGTT
CAAGACTATGAGCACCAGATGATGACATCAACAAGATCCACACTACCTGCACAGTGACGGGGTAGAGACACCCGCTGCAA
CGGAGGCGAGAACCGACGCTACGGGCTCTGAGACGCCGAACTGGACGGTGGAGGATCCAACTGAGTTCTTGGAGTCCTCG
ATACCTAGTGTATGCGGTACGACGCGACGCGGAGATGATAGGGGCATCCTACGATTGCGGCCCTACCCATGGGTGGGTAT
ACTGGGAAGAGTGGGACAAACAAGAACAAGGGATGTGGAAGGTTGGCGGCGAAGGCTACAGAGGTGAAAGCGAGCATGAC
TGTGCCAGAGAGGGAGAAGGAAGCGGCTACGGGGTAGAGGCGGCGGCGCTTGGGCGCTTCGACCGGTAAGGCGGGAAAGG
TGGAGGATTAAGGCGCGCGGGATGGTGGGTTTT------TGT------TTG------CGATTTTTTTACTGAAGATTATC
TTTGTTTTTTAG-AGTGGGATGCGGAAGGAGATG----------------------------------------------
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------------------------------------------------------------------------AAACGAAA
AATGACTAGATAGTACATACAGACATCAACGCCCTTTTAAGTTTCAAAAAAGAAACATCAACTTCTTTTTTTAATATTCC
TTCATATCCATATTAATTGACGCACACTTAGTACAACTTAGAG-------------------------------------
----------GTAACACTATTAATTTGTTGGAGATGCTCTAACCAAATGTAACGGTCAGAAGGGAAG-------------
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CACCATGCTGCTTGGAGTACCATTTATGCAATCATCAGTAGGCAAATGCACAGAAGGCAAGTTCAGGTCAGAAGCGTCAG
AAAGTCCTTGACCGAGTGCCATCGCCTTCAGATCACAAGTGACAAGTGTGGAGTCTAATTCACTGGGCGCAGCCAGGTCG
AGTCTCCGCCGCTTGGCTGCCTCCGGCCCATCACCGGATGGCGCCGCCGCCTCGGCTTGTGCCCGGTCAATGGCACGTTG
CTCCTCGACGGAGGTCATCGCAAAGCGGCACACTAGGCAGCGGCGGTTAAAGCGAAGCCGGTCGAAGATGCAGCGCTGAT
GGAAGGAGTGGCCGCACAACATCGTCCTCAGCTTCTTTC-----------------------------------------
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>chr5A_2
-GAACACAATATCACAGAGCAGTCATTTTTACACCGGTCTCTGATAAGCATGCTGCCAAGCCCCAAAGAGCTCATAACTG
ACGCGCCCGATAATGCT----------------------TGATGCCTGGCCAGTGGCGTGTCAGTGATGAGGGCCAGTGT
TGTCTGCACGTGTAGCAGTGAGCTGCGCCGTAGTTGCATCGGTTTCCATGAACTGGAGGTGTGTCTTGATAGTGTCCAA-
GGTTATAGTCACAATCACGGCCGCACCGACATGCTTCGGCATGACCATGAGGGAATGAGCTCTCGGAAC--AGACGCGGC
TCGTGATGCGCCATGTCGCAGGACACCCACCATAGCGCGATTGGACAACATAGGCGATGATGGATAGGCCGCAGTCGTGG
TACATGTCGTGGACACCGTTAGCAAGGAGGATCTTCTTGATGGACTCGGTGTCGCCGATGTAGCGGCATGCGGTGGAGTT
CAAGACTATGATCACCGGATGATGACATCGACAAAATCCACATGATCTGCGCGATGACAGGGTAGAGACGCCCGCTGCAA
TGGAGGCGACAACCGACGCTACAGGCTCTGAGACGCCGAACTGGATGGTGGAGGATCCAACCAAGTTCTTGGAGTCCTCG
ATACCTAGCGTATGTGGTATGGCACGACGCGGGGATGATGGGGGCATCCT-----TGCTGCCCTACCCATGTGTGGGTAT
ACTCGGAAGAGAGGGACAAAAAGAAACAAGGGATGTGGAAGGTTGGCGGCGGAGGCTACGGAGGTGAAAGCGAGCACGAC
TAGGTCAGAGAGGGAGAAGGAAGAAGCTACGGGGTAGAGGCGGCGGCGCTTGGGCGCTTCGAGCAGTAGGGCAGGAAAGG
TGAAGGATTAAGGCGCGTGGGATGATGGGTTTTTGTTTGTGT------TTG------CGATTTTTTTACCGAAGGTTTTC
TTTGTTTTTTCAGAGTGG--------------------------------------------------------------
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>SNPs
---------SS--------SS-------------------S--------------S-----------------------S
--S-S-------S-------SS--------------SS------S------------------------------S----
-----S--S------------------S-----------S-----S---------------------------------S
-----------S---------S----S---------------------------S--SSSS---SSS-SSS---------
-------------SS-S---S-------------------------------------------------S---------
---------------SS---------------SS------------S---------S--------S-----S--------
--------------------------------S---------------------------------------S-----S-
------------SS----S--------------S------------------------S----------------S--S-
---------------------------S-----------------------S----------------S-----------
-S-----------S------------------------------------------------------------------
------------------------------S-----------S--S--------------------------------S-
----------------------S--------S-------------------SSSSSS-S--------S----SS------
----------S-S---------S-S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------
---SSSSSSSSSSSS----------------------------------S-S-----------SS-----------S---
S--S----------------S--------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS--------------S-----S-----S-------------------S---------SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
-----------------------------------------S---------S------------------------SS--
--------S---------------S-------------------------------------------------------
---S--------------------------------S------S-SS---------------S-----------------
------------------S-------------------------------S---------------------S-------
----------------S----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS
>forward_879
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-----------------------------------------------------------CGAGCAGTAGGGCAGGAAAT-
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>reverse_2054
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-----------------------------------------------------ATGCTTGTAGGAGCGCGTTA-------
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