>input_sequence_87594
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------------------------------------------ATGGTCCACATATCAGATATTAAACTGATAAGAACAGA
TACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGCTTCTTCTTGGTGGCAAGGGTCTCCTTATATAG-------
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>chr4A_1_TraesCS4A01G413800
AAAGAAGACAAAATCAAAATACAAAGGTTCTATAGTAGAAAGAATTTGAGGCTCATAATACGTATTACCCTAAAGAAGAC
AAAAACAAAATACAAAAGTTTTTCTATAGAATTTTAGGCTGCCTATTAACCTAAATAATAACAAACAAAATGTTTGATGA
AACTATTCACCCATTTGATTCATGTGAATCGAGCATATTCTCTATTACCCTAAAGAAGAACAAACAAAATACAAAAGGTT
GATGAAACTATCTCCATTTGATTCGCGTGAATCGATCATATTCTAAGGGAAATCTCGTGATTTCAATAATCTACTTAGGC
GCCTTTTTTAGAATTTCTCTGCGCATTTTCTTTGAAATGTCGCGGCGGGGCGGGGGGTCCCACCTGAGTTCTGAATTTTC
GTTTAGAGCATAAGAGGGGCTTTTTGCAGAGCTAGCGTTTATCGCGAGGAGAGGAAGTCACCACAGAATTAAATCAGAGC
TTACATTTGCGAGCACATCAGCTGGTGTCTAAAGACCAATGCATTTCTGGCATCCCAGATCTTCCAGAGGAACAGCAATT
AGTGTCATGAAGGGTTGCAATGTTCTAGGGAGGCGTTGCTGGACATTGATCTTCAAAATGAGCTTGATGTCAGTGCAGTT
TGGCCTGGTGATCTAAATGGAGGAACAGATGTGCGCATGTTCAGTGGATTCAAGACACATAGGACACTTCTCTGAAGCGA
GGATGGTTTTCCTGAAAATGAGGAGGTGCTCCTCGCGCAGCTGCTTCAAGAAGATGAGCAGAAATCGCTTCACAAAGATT
GAAGTTAT--TAGCTTCAGTAACGAACATCAGTTTTGGGTTTTGAAGAAGGCAGGAGAAACAACTTTTCAATCCGATGAT
TTGGTGGGGTGCGCCAGCCCAGGCAGCAGTGCAACGCCTGGGCGACACGCAAGGGCCCCAGCAGCAAGCCACTGTGATGG
TCCCTTCCCCATAAAAAATAAATTTAATATCGTTGTGGGCACATGGTCCACATATCAGATATTAAACTGATAAGAACAGA
TACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGCTTCTTCTTGGTGGCAAGGGTCTCCTTATATAGCATGTCT
TCGCCTCCCTTCCGCTGTGGCTGCGCAAGGTGGAACTAAACGAAATGATAGCTTTTTTTTTTTTTTGAGTGCTACGAAAT
GATAGCTCTGCGCTAGCACCGCGCGACTCT--GCTCCGTTCGTTGCTCTGGGAGGCCCCGTTTCGGTCTGTTTGGGCCGT
GGTTGAATAAAAGCCCAGGAGAGATGGGCTAGTGAGCTCAGCAAGCAA--------------------------------
---------------------------------------------------------------ATGTCCTTCGTCCAGAC
TTTTTTCTTGCAATTCTCAACAAATATATTTTATTTTATTATTCTAAAAAAGAGAAACGGAAAAATCTAGACACCCATAC
TATTTATTTTTGAGAAATTTCTTTCAGCCGCCACCACTGGCAT--CCCTTTACACTATTTTCTTTTGTTTACATGCTAA-
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-------------------------------------------AATATGTAGC---------------------------
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-------------------------------------------------------------ACCGGTACTACTTCACAGT
TAAAACCAGCGACTTTCAAACAATACG----AGGCGAGGATGCATACTAGAATGCTCTAGATGTTACCAAA---------
---------------------------------------------------------TACTTCCTCCGTTCTTAAATATT
TGTCTTTTTAAACATTCCAAATGGACTATCACATATGGATGTATGTAGACATATATTAGTGTAGATTCACTTATTTCGGT
GTTC----------------------------------------------------------------------------
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---------------------------------------------------------TCCCTCCTCTAACGTGTCATTAG
CTCACCACATAATTTCTACTACTTATGAAGGATT----------------------------------------------
----GTCATATAAGCAAATGCTTATGAAGAGTTCACGTGGTTATGTTCACTAGAAAATAATTAGTTGGTGGTATTATTAT
TGCACATCAAGAGATAATTGCACTTGACAAAGTTGCCTGCCTTGTGGAAAACACAAGACTGCTACAAATGGTTCGGAGCC
AAAACCATGGTGAAAAGATGCTCATGTTCGACGGGAGAAGCTATGCTCCTGTCAATTCCGCAACCACGACAATGGTGACT
CTACTGTCTTCATTTCACTTGACGCTCGAAGCTGACCCCGGATTTAGGAAAA-CCTAACAAGTCAGTAGTTAGCCGTCTG
CTCCTGCTTCAGTGCCCTCCAGCCGATATCTCGCCTGA
>chr4D_740
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-------------------GAGGAGGTGCTCCTCCCGCAGCCGCTTCAGCAAGATGTGCTGCAATCCACTACAAGCAACC
AGATTAGAGCTAGCTTCAGAAACAAACATCAGTTTTGGGTTCCGAAGAAGGCAAGAGAAAAATATTTACAATCTGATTTG
GT--TGGGGTGCGCCAGCCCAGGCAGTAGTGCAACGCCTGGGCGACACGCAAGGGCCCCAGCAGCAAGCTACTGTGGTGG
GCCCTTCCCCATAAAAAATAAATTTAATATCGTTGTGGGCACATGGCCCACATATCAGATATTAAACTGATAAGAACAGA
TACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGCTTCTTCCT-GTGGCCTGGGTCCTCTTATATAGCGCGTCT
TCGCCTCCCTTCCGCTCTGGCTGCGCGAGGTGGGACTAAACGAAACGATAGCTCTA------------------------
----------CGCTAGCACGGCGCAACTCTCTGCTCGGTTCGTTGCTCTGAGAGGCCCCGTTTCGGTCTGTTTGGGCCGT
CGTTGAATAAAAGCCCAACATAGATGGGCCATTGAGCTCTGTAGGCAGTGCA----------------------------
----------GCAACTAAACGT------------------------------------AAGGCATGTCCTTCATCCAGAA
A-------------------------------ATTTTTTTGTTCTCAAAAAAAGAAGAGGCAAAATCCAGGCACATT---
--TTTTCTTTTGAGGAATTTCATTCAGCCACCA----------TCCCCTTTACACTAATTTTC-TTGTTTGTATGCTAA-
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-------------------------------------------AATATGTAGTG--------------------------
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--------------------------------------------------------------CCGGTACTACTTCACGGT
TAAAAACAGCAACTTTCAAACGATATATACAAGGCGAAGATGCATACTAGAATGCTCTGGATGTTACCAAACAGCAACTT
GAAGTAGCAAAGAGATCCATACCAACAAAAAAAAA---------------------------------------------
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--------------------------------------------------------GAGTAGCAAAGAGATGACAATGGA
TTGGTGGGTGACACGGAGGAGGAGACTGTTCTGTTCATATCAGTAGTGAATAGTGATGGCAATGAACCCCGAATCGCTCT
TACATTTCTTTACGGAGGGGG-----------------------------------------------------------
-------------------TACTTACGAAGGATT----------------------------------------------
----GC-----AAGGAGATGCTTATTTAGAGATCACATGGTTATGTTCACTTGAAAATAGTTGGTTGGTGGTATTATTAT
TGCACCTCAAGAG-------CAATTGACACA-TTGCCTGACTTGTGGAAAATACATGACTGCTACAAATGGTTCGGAGCC
AAA-CCATGGCCAAAAGATGCTCATGTTCGACGGGAGAAGCTATGCTCCTGTCAATTCCGCAACCACAACAATGGTGACT
CTACTGTCTTCATTTCACTTGAGGATGGAAGCTCACCCCAGATTTAGG-AAA-CCTAACTAATCAGTAGTTAGCCGTCTG
CTCCTGCTTCAGTGCCCTCCAACCAATATCTCGCCTGA
>chr4B_821
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----------------------CGAACATCAGCTCATTGTTCTGAAGAAGGCAAGAGAAACAATTTTTTAATTTGATTTG
GT--AGGGGTGCGCCGGGCCAGGCAGTAATGCAACGCCTGAGCGACACGCAAGGGCGCCAGCAGCAAGCTACTGTGGTGG
GCCCTTCCCCATAAAAAATAAATTTAATATCATTGTGGACACATGGCCCACATATCAGATATTAAACTGATAAGAACAGA
TACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGCTTATACCGGCTGCCGCGGGTCTCCTTATATAGCGTGTCT
TCGCCTCCCTTCCGTCGTGGCTGGGCGAGGTGGGACTAAACGAAACGATAGCTCTG------------------------
-------CTGCGCTAGCACGGCGCAACTCT--GCTCGGTTCGTTGCTCTGAGAGGCCACGTTTCGGTCTGTTTAGGCCGT
GGTCGAATAAAAGCCCAACATAGATGGGCCATTGAGCTCAGTAGGCAGTCTGGTCTTCTCAAAAAAAAAGTAGGCAGTCT
GGTAGGCCGTGCAACTACACGTCAAGGCGGATTCTAAAAAAAAAAAAAACTACACGTCAAGACATGTCCTTCATCCAGAC
T--------------------------------TTTTTTTGTCCTCAAAAAAAGAAGAGGAAAAATCCAGACAC------
--TTTTTTTTTGAGGAATTTCATTCAGCCACCACCCATTGCCATCCCCTTCACACAAATTTTC-TTGTTTGTATGCTACT
AGTAAGCATGCACGTGCAACGCACGTCTCAAACGTAAAACAGGTGAATTCACATAATATAAAAAAATAAACATTTTTAAA
AATATAAATTAAATGGATACACAATGTTTGATGTCGCTCAAATTGTATTTTCAAAAGCGAGACACAATAGTGGTTATGTT
CCTGCATAGAGTAATAGCAGGAAAATATTCTCATTTAAATAAAATCAGCAATTATTTATTAATGCAGTAATATATGCATG
TAGTATAGTCTTCTCTTCGAGTGTAGCCAGGAAAAAAAGTATAAACTGCCTTACGGTGCAATTATATTGTTCAAGATGCT
TAATTCTTGAATCTTATTTTATTCTACTAATCTGCATAGCAAAATATATATTTGTACTAATTTGGATCAAATTATATATA
TTTTTTGGTTGTGTGGACTGCCAAAATGATATAGCTACCTACTATGGATAATAGGAAATAGAAGATGATATGTGACTACA
ACGACTTCTATATGAAATAAAGATGATTTACAAGAACTAATTGAAATGTAAAAGGGCTAGAAGAAATTCAATAATTATCA
TGATAGAAAATATTTATCCGGTTTTGTATGTGTTTATGTGTTGGCAACCATACTAACTTACAATGATGTAAGATGCTTTG
TACATATAGAAACTGAAATGAGTTATGAAGAAAAATAAAGATGGAAGGAAAAGTATTCTAGAGTATTTGTCAAGCTTAAC
CTTATCAAGCTTTCAGGTCAGCTTCTAAATTACAAAAAAAATGATGAATCCTCAAATAAGAAAGAGCCAACAATTTGGAA
CATGCTACAAAACTGGTGAAGATAGAAAGCATTCATCCTCTTTTTTCTTGTCGTAAGGAGTAGCTTCAGCATATATTTTT
AACAGTGTAATACCTGATTCGAAAAAAGTTGTTCATTATTATTGTTGGAGGAAAGAGGCGCACAGACAAAGAAAGAGAGG
CGGTGCAAATAAGGCCTTAAACATCATGTCTTCAAGTTTGATGACTGCAGATATGTTGGATCATTCGAAACTGCACAAAT
ATATAAGAATAAATATATATGCCAAAATAGCGAAAGGTATTTGGTTTCTCTGTCATGAAACAAAAAATCTGACTGAGTAC
AGTTTATATGATTTCTCTGTACCAATATACGACAGCTGTATTAGGACAGATCCTTTGAAGGATCTATTTATTGGAACTCA
GCCGGATTAGTTTCTTCATTGGATCCTTTTGTATGGTAAAATTCTCTTTATTGGAACGCAGTAGAGATTGCATACCTTTA
CAGAACAGCAAGAGATATTCTCTAACAATAGTTACGGAGTCATGTGACCCGTTTTAGATGTATAGAATCATGTAACTGAA
ATAGTAGTACATCTTCAATATCTTGCCTCCTACTGAATCTTACATAATTTATTGGATTGCTGTGCAATTATGTTAAAATG
ACACGTGTAAAGTTTTCTCTAAGAATGAATCATATATTCTGATTTCCAACCTATCCCTAGAGATAGTGCCTAGCCAAGTG
CAACCCACCTTAATTCCAGGTAAAGCAACGTCATACGTAAAAAACACACTGATCAAATAGTACAAATAAGGCAATTCTAA
TCAAGGGGATGGTGTTACCTCTTGATACGGTCCAGTTTAATGCATATGGTGGTACGAAGTAAAGCCCAAGGAAGCCGACA
TGAACATGAGAAGTAATCATGGGAAATAGACTTTGCATCTTGACTTCTTCAGTATCCCTCTTGATCCTACTTTGTAAGAC
AAGATTGCTGCATTCTTATGTACGTGCCATATATAATTACACATTTTCAGTACAGCAATCGGCAACCTAAGATAATCCCA
AATTTATAATTCTAGATTGCTTGAAGGCCCACGATTCTTATTTAATATGTAATGCACGTGCACCCACTGAACAGACACTT
TGTCGGCATGGGTGCTGCGAACGGAGCTGAAGTCAACGCGGATGTCGATGGTTGCCGGAGAGCATGCCCTGGACGTGGAT
GGAGTCGTCGCAGTAGCGGCAGAAGAGCGCCTGGCCTCCAAACAGAAGACGATGGCGGCGATAGCACGTGTGTTCCCGGA
GAAAGACGAAGCTCCTCGCGCTTCCCCCATCGTGGCTAGCGTGCATGATGGCGGCAGGCGGCTCGCGATTAGCTTCCTAA
TAGGATGGATGCGTCCGAGATAAGTTTTTTAATAGGATGGATTTGTCTGAGATTAGTTTCCTTATAGGATGGATGCACTC
TGATTTAGTTTCCTAGAATAGGACGCACCCGTGATTATTAGTTTCCTAATTGCGCAGGCGTGGAGTTTCATATTTTCCTC
CACGGTGGAGTACGGTCAGTCAATGTAAATTGCTAAGTGCACACAGAAAATGATTTAGGTTAAGGCTAACCGATAGATTG
ATTTTAGTGGGCCTAATCGTGCGGTGGTATTGGATCTGTGTACACTTTGTGGGGTGTGCTTAAAAAAGTTCTTGTTTGAT
TGTTTAATAGTAGTATAGATGTTCCCGAAGAAAGACGAAGCTCCTCGCGCTTCCCCCATCGTGGCTAGCGTGCATGATGG
CGGCAGGCGGCTCACGGTTAGCTTCCTAATAGGATGGATGCATCCGAGATAAGTTTTTTAATAGGATGGATTTGTCTGAG
ATTAGTTTCATAATAGGATGGATGCACTCTGATTTAGTTTCCTAGAATAGGATGCCCCCGTGATAATTAGTTTCCTAATT
GCTCAAGCGTGGAGTTTCATATTTTCCTCCACGGTGGAGTACGGTCAGTCAATGTAAATTGCTAAGTGCACACAGAAAAT
GGTTTAGGTTAAAGCTAACCGTTAGATTGATTTTAGTGGGCCTAATCGTGCGGTGATATTGAAACTGTGTACGCTTTGTG
GGGTGTGCTTAAAGAAGTTCTTGTTTGATTGTTTAATAGTAGTATAGAAAAAATCTGCAGTACCTGTACTACTTCACGGT
TAAAAACAACAACTTTCAAACGATA--TACAAGGCCAAGATGCATACTAGAATGCTCTGGATGTTACCAAACAGCAACTT
GAAGTAGCAAAGAGATCGATACAAAAAAGTAGCAAAGAGATCCATACATACAAATAGTACTCCCTCCGTTCCTAAATACT
TGTCTTTCTAGGCATTTCAACAAGTGACTACATACGGAGCAAAGTAAATGAATCTGCACTCTAAAATATGTCTACATACA
TCCGTATGTAGTAGTCCTTTGAAATGTCTAGAAAGACAAATATTTAGGAACGGAGGGAGTAGCAAAGAGATGACAATGGA
TGGCGATGAACCCCGGAAGAGAAGAATGTTCTGCTCATATCAGT------TAGTGATGGCGATGAACCCCGAATAGCAAA
AGAGGAGGCTATGGCAGCATGGGCTGTTCCTCAACAGACTATTGAATTCATGTATTGTCCCTCCTCTAATGTGTCATGAG
CTCACCACATAATTTCTACTACATCCGTATGTAGTTCATATTGAAATATCTAAAAAGATTTATATTTAGGAATGGAAGGA
GTAGGTCCTATAAGCAAATGCTTATGAAGAGCTCACGTGGTTATGTTCACTAGAAAATAATCAGTTGATGG---TATTAT
TGCACCTCAAGAGATAATTGCACTTGACACG-TTGCCAGCCTTGAGGAAAACACAAGACTGCTACAAATGGTTCGGAGCC
AAA-CCATGGTCAAAAGATGCTCATGTTCGACAGGAGACGCTATGCTCCTGTCAATTCCGCAACCAGAACAATGGTGGCT
CTACTGTCTTCATTTCACTGGACGCTGGAAGCTCACCCCAGATTTAGG-AAAACCCAACTAATCAGTAGTTAGCCGTCTG
CTCCTGCTTCAGTGCCCTCCAGCCGATATCTCGCCTGA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS---------------S------S------SS------S--S-S----SSS-SSS-SSS-SS
SS-S-SSS-----------S---------------------S-----------S---------S---------S---SSS
S-SS----------------------S------------------------------------------S------S---
S---------------------------------------------S---------------------------------
-----------------------------------------------S-------SS-----------------S-----
--------------------------S------S-----------S-------S-SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS------------S----S-----------S-------------S-----------------------------
-----------------SS-S--------S-S---------S-S---S--------------------------------
------------------------------------------------------------------------S-------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--S----S-----S----SS---------S------SSSSSS
SS---S--------S------S-------S-----SS-S--SS--------------S---SSS------SS--------
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----------------------------------------------------S---------------------------
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-----------------------------------------------------------------------------S--
-----S----S----------S---SS----------S--------------------S---------------------
-------------------------------------------------------------S---------S------S-
-------S--SS----S---SSS-SSSS-SSSSSSS-SSSSS-SSS-SSS-SSSSSS-S-S--S-S-SSS-SSSSSSSSS
SSSS----------------------------------------------------------------------------
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---------------------------------------------------------------------S-------S--
-------------------------S------------------------------------------------------
-------S-----------------------S------------------------------------------------
-----S-----------------------S-S------------------------------------------------
---S-------S-------------------------------------------------------S------------
--------------------------S------S-----S--------S----------S-S------------------
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>forward_510
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----------GAGCACATCAGCTGGTGTCT--------------------------------------------------
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>reverse_4795
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--------------------------------------------------------------------------TTCGGT
GTTCTCCCTCCTCT------------------------------------------------------------------
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