>input_sequence_87588
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--------------------------------------------------------ATGACCCACATATCAGATATTAAA
CTGATAAAAACAGATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGAGTTGGGGTGCTGCCCTGCCTATTTA
TTTGTAG-------------------------------------------------------------------------
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>chr3D_1_TraesCS3D01G396700
AAGAACTTGTCAACGTAATTATTTGGTTTAACCGTTTAAGCATGCAACAGCCGTGTAAGCAAACTGGTAATATAGCAGCA
CCTGGCTAAAGAAAACAACTTGTCTGGGTGGTGTAGTTGGTTATCACGTTAGTCTCACACACTAAAGGTCCCCATTTCGA
ACCTGGGCTTAGACAACTATTTTTTTTAGCTTTTTTTAAAGCATATAG--GTAGCTCGTTAATTTGGTTTGAGATTAATC
C-------------------------------------------------------------------------------
-------------GACTTGCTCAAATTATTCATGCTATATACTCCTTTCGTCTAAAGCATACTATATTCTTGTAGAAAAT
CAATAGTCATACTTGTCTGTACAGTACTTGACCACTAGTTAATTAGTAACGACGTTAAAAAAGATGTGAATGGCACCATT
GTATTTTTCATTAACAATTGTATCACAACTTTTTTTTGGTCATGGTTTACTTGCATACATCTTTTATCTATTGCCAATAT
CACTAACTAGAAAAAA--TATGTTAACAATTTGTTCTTTCGTGCGTGTCGCGGCGACTCACGGAACGTGTGGCTACCCCC
TGAGATAGATACAGGACGAGTAACGACGACTACTTGGCGGCTTTGTGTACAGCAAGTAAAATGCCACGGTGACCAGTAGT
ACAGATTGTGAACATAGTGGGTCTGATTTGCACGAAGCGCTGAGGAAAACACGCATCCAACTTCGAAACGGCAGCAAGCA
CGCTGTGGCTGCATGCAAAGTTGAGCTAATCTGCTTCCGAAAGGACTCGCGCCAACCTCCTACAAACAGTCTCTTCTACC
GAATACTTAACCAAAGCATTGGTTAAACTTCAAACATCGCCAAAAATTTAAATTTTAACTTGATTTGGTTGGGGTGCACC
TGTTTAACTTGATTTGGTTGGGGTGCACCTGCCCAAGCAGTAGTGCAACACCTGGGAGACATCTAAGGGTCCCAGTGGCA
AGCCACTGTAGTGGACCCTTCCTCATAAAAAATAAATTTAATATCATTGTGAACACATGACCCACATATCAGATATTAAA
CTGATAAAAACAGATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGAGTTGGGGTGCTGCCCTGCCTATTTA
TTTGTAGCTTGAGCGTCCTCCCGTTCCTTCTGGTTGGGCGAGGTGGTACTAAACGAGTTGCTCGCGCCCACACGCCTGCT
GAGTGCGCATGGCGTAACCCCCAAGCGAGGCCAAATTTGCTGTTTTTATCTTTTTACGTAAGTTTAGTCAGATCTGGCCC
TTATTCGAAAATATTTCGGGATTTGA-CCTTTTTCCTACCGCCATAGTCCTCGGCAGTAGGGTATAACATGCTACCGCCA
CGGTCTGTCACAAACTCACAGTAAGGTTTAACTGCGCCATTACATGGCCATAATGTGGAAAATACCCCACCGCCAAAGAT
TCTGGTGGTAGGCCTTTATAACCTACCGCCAGTGTAT--------AGGGCAGGTCATTGTTCCCAGACGAAAGTTGCATG
TGCATGCGCCCACCC-----GGTTAAAGCTGCTGCTGCTACATGCACGCCTACCCAGCTTAA---GCTGCTACTGCTAGT
ACTCCTTGTGCATGCATGGGCAATGGGAGAGAGAGTGATTGATTGATTGGATCCAATAAACAAACATCGCATGACGTGTG
TCTCTGGTTC--------------------------------TGCATGTTCCTGGGA----------------GGTAGTG
ACAATACTAAGGGGGTGTTTGGTTCAGGGACTTTTTAGTCCCAGAGACTACAGAAAGTTCCTAAAAAGTCCCTAAGAACC
AAACGGGAGGGACTTTTTCTACAGGGACTAGAAAAAGACTCTACTAGAGAGTCTTTTTTGATTAGTCCCTAGGACTAGAA
AAAGTCCTACGACTTCTGAACCAAACACCCCCTAAAAGAAAGCTAGGAATATAAGGCTGCACCATTGCACCTTCCAGGAA
TGATGCGTGCATGCATGTTGCACAGCTACCACCATGCTCTTTGGCGGTAGGTTTGTATAGCCTACGGTCATTGACGCTGG
CGGTAACCACTTAACCACGTCAGTTGTTCGTGACGGCGTTGGTACATTGACCAGGTTTCTACCGCCAGGACCAGTAGCGA
TAGGTTGTTCTACACTACCGTCAAGGATTATG
>chr3A_9
--------GTCAACGTAATTATTTGGTTTAATCGTTTAAGCATGCAACATGCGTGTATGTCAGTTGGTAATATAGCAGCA
CCTGGCTTAAGAAAACAACTTGTCTGGGTGGTGTAGTTGGTTATCATGTTAGTCTCACACACTAAAGGTCCCCAGTTCGA
ACCTGGGCTTAGACAACTATTTTTTAACGTTTTTTAAAAAGCATATAGGAGTAGCTCGTTAATTTGGTTTGAGATTAATC
CACTTAATCACATTTAATCTCCTAAATGCATGGTTCATCTAAAAAAGAAGCCAACAAAATTATATTAATGGCATATGCAA
GAATTAAAGAATTGACTTGCTCAAATTATTCATGTTATATACCCCTTTCGTCTAAAGCATATAC---TCTTGTAGAAAAT
CAATAAGCATACTTGTATGTACAGTACTTGACCACTAGTTAATTAGTAACGACGTTAAAAAAGATGTGAATGGCACCATT
ATATTTTTCATTAACAACTGTATCACAGCATATATTT-GTCATGGTTTACTTGCATACATCTTTTATCGATTGCCAATAT
CACTAACTAGAAAAAAAATATGTTAACAATTTGTTCTTTCGTACGTGTCGCGCCGACTCACGG-----------------
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>chr7B_1216
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-------------------------------CAAATGTCCTGTTTTGACCCTTTTACGAAAGTTTAGCCTGATCTGACCC
TTGCTCGGAAGAATTTCGGGATCTGACCCTTTTTCCTACCGCCACAGCCCTCGGTGGTAGGGTGCAACATGCTACCTCCA
TGGTCCGTTGTG--------GTAGGTTCTAACTGCACCGTCACACAACCGTAACGTGGAAAATATCGTACCGCAAAGATT
TCTGGCGGTAGGCCTTTCTACCCTACCGCCGGTGTGCTTGGCGGCAGGGCAGGTCCTTGTT-CCAAACGGAAGTTGCATG
TGCATGCATCCAACCCATCCGGTTAAAGCTGCTACTACTACATGCATGCCTAACCAGCTTAAGTTGCTACTGCTGCTAGT
ACTCCCTGCGCATGCAT-GGCAATGGGAGAGAGAGTGATTGATTGATTG-ATCCAATAAACAAACACGCA--------TG
TCTCTGGTT-CCATCTCTGTTCACCAAAAATGCATGAATTGATGCATATTCGTGGGAATATAAGGCTAGGAATGGTACTG
ACAATACTAA----------------------------------------------------------------------
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-----------------------------------AAAAAAGCTAGAAATATAAGGCTGCACCACTACACCTTGTA-GAA
TGATGCATGCATGCATGTTGGACAACTACCACCATGCTCTTTGGCGGTAGGTTTGTACAGCCTACGGCCATTGACACTGG
CGGTAGCCACTTATCCATATCAGTAGTCCATGACGGCGCTGGTACGTTGATCAGGTTCCTACCGCCAAGACCAGTGGTGG
TAGGCTGTTGTACCCTAC--------------
>chr7B_1394
TAACT---------------------------------------------------------------------------
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------------------------------------------------------GTGAAAAATACCCTACCGCCAAGGTT
TATTGCGGTAGGCATTTATAACCTACCGCCAGTGCCCTTGGCGGTGGGGCAGGTCATTGTTCCCAAACGAAAGTTGCATG
TGCATGCGCCCACCC-----GGTTAAAGCTGCTGCTGCTACATGCACGCCTACCCAGCTTAA---GCTGCTGCTGCTAGT
ACTCCTTGTGCATACAT-GGCAATGGGAGAGAGAGTGATTGATTGATTGGATCCAATAAACAAACATCCAATGACGTGTG
CCTCTGGTTCCCATCTATGTTCACCGAGAATGCATGCATCGATGCATGTTTCTGGGA----------------GGTAGTG
ACAATACTAA----------------------------------------------------------------------
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-----------------------------------AAG------AGGAATATAAGGCTGTACCGCTGCACCTTGCGGGAA
TGATGCGTGCATGCATGTTGCACAGCTACTGCCATGCTCTTTGGCGGTAGGTTTGTATAGCCTACCACCATTGACGCTGG
TGGTAGCCACTTAACCACGTCAGTTGTCCGTGACGGCGTTGGTATGTTGACCAGGTTTCTACCGTCAGGATCAATGGCGG
TAGGCTGTTCTACCCTACCGCCAAAGATTATG
>SNPs
S-SSSSSS-----------------------S-----------------SS------S-SS-SS----------------
-------S--------------------------------------S---------------------------S-----
-------------------------SSS-S-----SS-------------------------------------------
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----------------------------------S-------S------------------SSSSSS-------------
-----SS---------S---------------------------------------------------------------
S----------------S---------S-S-S-S---S------------------------------S-----------
------------------------------------------S---------S----------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-S-------S-S-S-------S--------S-S------S---
--SS---S--SS----------S---------------------S--S------SS-------SS-----------S---
S----S--SSSSSSSSSSSS---S-S-S-------S--S-S---SSS--S---S-------------S--------S-S-
-----S-----------------------------SS----------------------------S--------------
-----------------------------------------------------------------------S--------
-----------------S--------------------------------------------------SS----------
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----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------S--------S------
-------------------------------------------------------------------S------------
-----S---------------------S-----------------S-----------------------------S---S
----S--------S------S---S-------
>forward_797
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---------------------------------------------------------CAACTTCGAAACGGCAGCAA---
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>reverse_2074
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-------------------------------------------------------------------------CCAGGAA
TGATGCGTGCATG-------------------------------------------------------------------
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