>input_sequence_87579
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-----------------------------------------------------ATGTTTGACGACCAAGACTTGGGTTTC
ATCACCAACTGCCTGGGCATCTTCATCTTTGTGTTGGT---------CATCGCGTACCACTTTGTGATGGCGGACCCGAA
GTACGAGAACTGA-------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G190800
CGGTTTTCTTTAAAATACTTTCAATTTTTAAAAGTAAATCAGGAA-TTTAAAAAACCATGAATTTTAGAGAATATTCCCA
ATGTAAAACATTTTCCCAAATTCAAAATAATTTGAATATAAAATTATTCCCTAAGTTTTAAAAATGTTTGCAAAATTTAA
AAAGTACAAAAA--TAAAGTTCATGAA-GTTTAAAAACATTTTCAAACTTGAAAGAAATGAAAAAGTAAAATAATATTAA
AGAATTTTAAAAAATGAATTGAGAAAAA---TATTCATGAATTTAAGAAATGTTGCTGTATTTTAAAAAGTAAAAATGG-
AAAATAAAATATAATAAAAAATAAAAAATACGAAATAAAAACACAGTAAAAAGGAAAAGTTGTCAAGGAATGTTCTACT-
--AGAATCTTTCAAAACCGGAAGAGAGAGTC------------TTTCGAAGTCTGCTTCGGCCGGCCCAGTAATGGTGGG
TAGTGTTAGGTGAGCAGATTATGCGAGGTTGACAAACCTCGACCT----------------------------------A
TGCCTTGAATAGGATCACCTCAGAGAAAAAGAAGAAGCGTTGAATAGGATTTCCAGGTATACAACATTTTGGTCCTTGAA
CTTGAAGCGAGGTCAGCAGATTACGCGAGGTTGACTTGCTGCTTTTTGTATTGACAACCTGTCGCCATGATCTTATACTC
CCTCCGTTTCAAAATAGATGACTCAATTTTATACTAACTTTAACTACCTCCGTTTCAAAATAAATGACTCAACTTTATAC
TAACTTTATACTTAAAGTTAATACAAAGTTGAGTCATCTATTTTAAAACGGAGGGAGTAGTAAGCTTGTAGTGCTTCTTG
CCCTCCTCTCGGACACTAGGCGCACATCTCGTTCATAACCTCTGTTTG-ATGTTGTGCTTTAGCCTCTGCTTCCATGTCA
TATACTTCTGACAAGTGGCAACCAGTACATTTGATCATGTATCATGGCTAACTTGTTTT---------------------
-------------CAGACCTTAACTATCCTTTGTTTG-CAATGTTTTCTGCAGATGTTTGACGACCAAGACTTGGGTTTC
ATCACCAACTGCCTGGGCATCTTCATCTTTGTGTTGGT---------CATCGCGTACCACTTTGTGATGGCGGACCCGAA
GTACGAGAACTGATCATCTTTTGTTTATCAATGAGACCGCATTATACTCGGAACAAATTGCGAAATATGTCGGTTAATGG
GGACGGAGCGCTTTGTGCTATTGTTGTTCTCTCCTACCTATCAATGAAAAGATACGCAAGCTTCGCGTATTCGCAAAAGG
AAGGTACGAAGCGCTTGACGATTCTTCTTAAGTGCAAATTATCTGGC----GACTTGAATTGTGTTTAATCTGTTGAACT
AATGAACCATGGAGATTTCAAAAGATTGATTTACTATATGCTCATGTTAGCTCCTGCTTGTTGCTTGTT-------TGAT
TATGTGATCTGTATGTATGCCAGATGAATGAA-CTTCTGAAAACACAAGCGTTATTATGTC-----CGTGTTGATGGTTA
CCATCGTCTGTCACACTCGTCTTGTGAGTCGCAATGTGAATGGAGATCAGTGCACGGGCGGTCGTTGCTCCTCCCGGTGG
CGGTCATCATGCTGTCGCCCGTGACAGATGGAACGGCCGGGGTGGAAAACCATGGTGGAAGGTAAAGCCATTCCCGCAGC
ACGCAGGTCCTTCCTCCGATACTCCACGACGGATCGTGCGGTGAGTGGTGACATGAAGATTCGCACCCCGCATCGAGCAT
TTTTCTAGATAGAGGGGG-CTTTGGCGCGCACGC-GGGGGCGGCACCAAAGAT---CTACGAGGTAGCTTCGCGCTCTCC
GTGGTGGCTGCCTTTGTTGGGTGCCTAT---CCTAGTTAAATCGTGCGCCTGTGTGCACTTCTATAGTAGCCTTTTCACA
ATAACAACAATCCGACGTGCTGCTGGTTGGGTTGGATT--GACGTGTGCGATGCCAAAACCTTCGATCGGCATCGAGGGC
AGTTCCGCCTCGTGTCCACGGTTGCACATTTTCGCTTTGGCTTATCCGGAAATGGCAATGGAAAAAATATGTTTTGGTTT
CCCATGGAACTGAGAGACCTTACTTCCTCACTGAACATTCGGATGGACAGGCCGGACAGAACCCGGACACACACAAAACA
>chr2A_1
CGGTTTTCTTTAAAATACTTTCAATTTTTAAAAGTAAATCAGGAATTTAAAAAAACCATGAATTTTAGAGAACATTCCCA
ATCTAAAACATTTTCCC-AAATCAAAATAATGTGAATATAAAATTATTCCCTAATTTTTAAAAATGCTTCCAAAATTTAA
AAATTACAAAAAAGTAAATTTCATGAA-TTTTAAAAACATTCTCAAACTTCAAAGAAATGAAAAATTAAAACAATATTCA
TGAATTTAAAAAAATGAATTTAGAAAAA---T---CATAAATTTAAGAAATGTTGCTGTATTTTAAAAAGTAAAATTGTA
AAATAAAAATAATAGG--------AAAATGCGAAATAAAAACACAGTAAAAAGGAAAAGTTGTCAAGGAATGTTCTACTA
GTAGAATCTTTCAAAACCGGAAGAGAGAGTC------------TTCCGAAGTCTGCTTGAGCTGGCCCAGTAATGGTGGG
TAGCGTCAGGTGAGCAGATTATGCGAGGTTGACAAACCTCGACCTTTGTCTCAAAAGAAAAAAGGACAAACCTCGACCTA
TGCGTTGAATAGGATCACCTCAGAAAAAAAGAAGAAGCGTTGAATAGGATCAAGTTCAAGGACCAAAACGCTGTAT---A
CTTGAAGCGAGGTGAGCAGATTACGCGAGGTTGACTTGCTGCATTTTTTATTGATAACCTGTGGCCATGATCCTATAGTA
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-----------GACACTAGGCGCACAGCTCGTTCATAACCTCTGTTTGTATGTTGTGCTTTAGCCTTTGCTTCCATGTCA
TATACTTCTGACAAGTGGCAACCAGCACATTTGATCATGTATCATGGCTAGCTTGTTTT---------------------
-------------CAGACCTTAACTATCCTTTGCTTG-CAATGTTTTCTGCACATGTTTGACGACCAAGACCTGGGTTTC
TTCACCAACTTCCTGGGCATCTTCATCTTTGTGTTGGT---------C---------CACTTTGTGATGGAGGACCCGAA
GTACGACAACTGATCATCTCTTGTTTTGCACCGTCT--------TACTCGGAGCAAGTTGGGAAATATGTCGGTTAATGG
GGACGGAGCGCTT-------------------------------------------------------------------
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>chr2D_3
--GTTTTCTTTAAAATACTTTCAATTTTTAGAAGTAAATCAGGAATTTTTAAAAACCATGAATTTTAGAGAATATTCCCA
GTCTAAAACATTTTCCCAAATTCAAAATAATGTGAATATAAAATTATTCCCTAATTTTTAAAAATGTTTCCGAAATTTAA
AAAGTACAGAAAAATAGAGTTCATGAATTTTTAAAAACATTCTCAAACTTCAAAGAAATGAAAAATTAAAATAATATTCA
TGAATTTTAAAAAATGAGTTTAGAAAAATATT---CATAAATTTAAGAAGTGTTGCTGTATTTTAAAAAGTAAAAATGG-
AAAATAAAAAAAAAAG--------AAAATACGAAATAAAAACACAGTAAAAAGGAAAAGTTGTCAAGGAATGTTCTAC--
-TAGAATCTTTCAAAACCGGAAGAGAGAGAGAGAGAGAGAGTTTTCAGAGGTCTGCT-----------------------
-----TTAGGTGAGCAGATTATGCGAGGTTGACAAACCTCGACCT----------------------------------A
TGCGTTGAATAGGATCACCTCA-AAAAATTTAAAATGCGTTGGATAGGATTTCCAGGTATACAGCATTTCGGTCCTTGAA
CTTGAAGCGAGGTGAGCAGATTACGCGAGGTTGACTTGCTGCATTTTGTATTGACAACCTGT------------------
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---------------------------------------------------------------------AGTGCTTCTAG
CCCTCCTTTCTGACACCACACGCACAGCTCCTTCATAACCTCTGTTTGTATGTTGTGCTTTAGCCTTTGCTTCCATGTCA
TATACTTCTGACAAGTGGCAACCAGTACACTTGATCATGTATCATCGCTAGCTTGTTTTCAGACCTTAACTATCCTTTTT
TTTTTCGATGGTACAGACCTTAACTATCCTTTGTTTG-CAATGTTTTCTGCAGATGTTTGACGACCAAGACCTGGGTTTC
TTCACCAACTTCCTGG-CATCTTCATCTTTGTGCTGGTCATTGCGTAC---------CACTTTGTGATGGCGGACCCGAA
GTACGAGAACTGATCATCTCTTGTTTCGCAATGAGACCGTATTATACTCGGAACAAATTGGGAAATATGTCGGTTAATGG
GGACGGAGCGCTT-------------------------------------------------------------------
----------------GACGGTTCTTCTTAAGTGCAAATTATCTGGC----GACTTGAACTGTGTTTAATCTGTTGAACT
AGTGAACCATGGAGATTTCAAAAGATTGATTTACTATCCGTCCATGTTAGCTCCTGCTTGTTGCTTGTTGCTTGTTTGAT
GATGTGATCTGTATGTATGCCAGACGAATGAATCTTCTGAAAACACAAGCGTTGTTATGTC-----CGTGTTAATGGTTA
CCATCGTGTGTCACACTCGTCTTGTGAGTCGCAATCTGAATGGAGATCAGTGCACGGGCGGTCGTTGCTCCTCCCGGTGG
CGGTCATCATGCTGTCGCCCGTGACAGGTGGAACGGCCGAGGTGGAAAACCATGGTGGAACGTAAAGCCATTCCCGCAGC
ACGCAAGTCCTTCCTCCGATACTCCACGACGGATCGTGCGGTGAGTGGTGACGTGAAGATTCGCACCCCGCATCGAGCAT
TTTTCTGGATAGACGGGG-CTTTGGCGCGCACGCGGGGGGCGGCATCAAAGAT---CTACGAGGTAGCTTCGCGTTCTCC
GTGGTGTCTGCCTTTGTTGGGTGCCTAGTAGCCTAGTTAAATCGTGCGCGTGTGTGCACTTCTCTAGGAGCCTTTCCACA
ATAACAACAATCCGACGTG-------------------------------------------------------------
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>chr2B_801
TAGTAGCTTCTTGC------------------------------------------------------------------
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-----------------------------------------------------------------------TGCTTCTTG
CCCTCCTTTCCGACACTACACACACAACTCGTTTATAACCTCTGTTTGTATGTTGTACTTTAGCCTTTGCTTCCATGGCA
TATACTTCTGACAAGTGGCAACCAGTAGATTTGATTATC-ATCATGGATTGCCTGTTTT---------------------
-------------CACATCTTAACTATCCTTTGTTTGCCAATGTTTTCTGCAGATGTTTGACGATCAAGACTTGGGTTTC
TTCACCAACTTCCTGGGGATCTTCATCTTTGTGTTGGTCATCGCGTAC---------CACTTTGTGATGGCAGACCCGAA
GTATGAGAACTGATCGCCTTTTGTTTAGCAATGAGACCGTATTATACTCGGAGCAAATAGGGAAATGTGTCGGTTAATGG
TAACAGAGCGCTT-------------------------------------------------------------------
----------------GACAGATCTTCTTAAGTGCAATTACCTGGCATTGTGACTTGAATCATGTTTAATCTGTTGAACA
AGTGAACTGTGGAGATTTCAAAAGATTGATTTACTATCTGCCTATGTTGTACCCTGCTTGTTATTTGC----TGTTTGAT
GATGTGATCTGTAT------------------------------------------------------------------
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>chr2A_1435
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---------------------------ATGAATCTTCTGAAAACACAAGCTTTGTTATGCCCGTGTCGTGTTGATGGTTA
CCATCGTCTGTCACACTCGTCTCGTG-GTCGCAATGTGAATGGAGATCAGTGCACGGGCGGTCGTTGCTCCTCCCGGTGG
CGGTCATCATGCTGTCGCCGGTGGCAGGTGGAACGGTCGAGGTGGAAAACCATGGTGGAACGTAAAGCCATTCCCGCAGC
ACGCAGGTCCTTCCTCCGATACTCCACGACGGATCGTGCGGTGAGTGGCGACATGAAGATTCGCACCCCGCATGGAGCAT
TTTTCTGTATAGAGGGGGTCTTTGGCGCGCACGC-GGGGGCGGCATCAAAGATGATCTACGAGGTAGCTTCGCGCTCTCC
GTGGTGGCTGCCTTTGTTGGGTGCCTAGTAGCCTAGTTAAATCGTGCGCGTGTGTGCACTTCTCTAGGAGCCTTTTCACA
ATAACAACAGTCCGATGTGCTGCTAGTTGGGTTGGATTAAGACGTTTGCGATGCCAAAACCTTCGATCGGCATCGAGCGC
AGTTCCGCCTCGTGTCCACGGTTGCACATTTTCGCTTTGGCTTATCCAGAAATGGCAATGAAAAAGATATGTTGTGGTTT
C-------------------------------------------------------------------------------
>SNPs
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--S----------------------------S----------------------S--------------S----------
----------------------------S------------S--------S--------------S------------S-
S-------------------S-----------SSS---S-----------------------------------------
-----------S--SSSSSSSSSS--------------------------------------------------------
---------------------------------------------S------------SS--S-----------------
---S----------------------------------------------------------------------------
---S--------------------S--------------------------------------S-----S----------
-------------S----------------------------S-------------------S---------S----S-S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------
-------S--S---------------S---------------------------------------S-------------
--------------------------------------------------S-----------------------------
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S---------S-------------------------------------SSSSSSSSS-----------------------
---------------------------S-----------S--------------------S-------------------
-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS----S-----------------------------------------------------------
-S-----------------------------------S---S--------------------------------------
S-----------------------S----------------------------S--------------------------
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---------------------------S-----------S--------------------S-------------------
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------S--------------------------------------S----------------------------------
---------------------------S---------------------S-------------S---S------------
------------------------S--------------------S-------------------------------S--
-----------------------------------------------S------------S----S-------S------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_713
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-----------------------------------------------------ACAACCTGTCGCCATGATCT-------
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>reverse_2218
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---------------------------------------------------------AGAACCCGGACACACACAAA---
