>input_sequence_87520
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------------------------------------------ATGAAGCTCGCCG---GGAGCCAGAGGAGAGGAGGAGG
CTTGAGCAGGACCTTGAAGGAGCACAGGGCCAGGCTCTACATCATCAAGCGCTGCGTCGTCATGCTCCTGCGGTGGCACG
ACTGA---------------------------------------------------------------------------
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>chr7B_1_TraesCS7B01G432600
TTTGCGCCCGCGCGCTGGGCCGTCTCTTTTGTCCTTTTTATCCCAAACGGACGGGGGCGGGCAGGATAGGGTCACGCGGT
GAAGTTGGCCTTAAATGCGGCGAATCTCCCTCCACGTCGTGCCCACATGTCGGACTGTTGACTGGAATTGTTTCTAGGAA
AACAGTCATGGAAGTAATCCCCCAATCGACGAAAGAAAGACGGACACTCGT----GTGTGCACACCCACCATGCATCCAG
GCCAGGCCGACAGGAGCACATGCACCCACGGTCCCCGACCCCCAGCACCAAGTGGTTAGCACTACCTCGTTAACATCTGC
TACCTC-AATAAACATAGAGAGAATCGATCGACTGTCCGAACAGAAAAATGACTAAACGACTA-----------------
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--------------------------------------CGAGTCATGAACCACCATGGGAACAAAGACAGTGGAGGCGGT
GGCCTGTCCTGT--CCTCTACTGCA-CTGACCTGGAGCGCACGAGAGGGCGTGCGTG-----GTGCGTGTGCATGGCAG-
-CGACCCTTCACCGCCGTGCCTCCGACACATTTTCCACCGGGGCCAGGGCAGCGCGCGCACG----CGCGCACGGCGCTC
TCCTCTGACGACGGCCGAACCACCCTGCCCGGCGGTCCGGGGGGCAGCAGGAATCCGCGCCGGGCTGTCCGCGTCGCTGC
CTGCCGCTGCGCGCCCATGTGGCCCTGCACA--------CGCCCGCATTATCAATTGCTATCTTCTTCTACCTTGCTCCA
TCTCCTTCACCTTCACCCCCGCTATCAGCCAGCTCTTGCGTGCCCTCTGGATCTGGATCTAGCTCGCCCCCTCCCTCCTC
CGTCCCTATATATAAGCCCACCCGTTGGTTGGAGCCGTGAGCCATCACCACTCCCCACTGCCTTTGCCGAGAAGAAGAGA
TCATTGGCCAGAGCGAGAGTTCACCGTTCAACAACACCCCTTCACCAAACCTTGCTCGCTTCCAACGATCATCCATCGCC
ACGCCACACACAGGGAGAGAGAGTGCGTGTGTTGAAGAGAAGATGAAGCTCGCCG---GGAGCCAGAGGAGAGGAGGAGG
CTTGAGCAGGACCTTGAAGGAGCACAGGGCCAGGCTCTACATCATCAAGCGCTGCGTCGTCATGCTCCTGCGGTGGCACG
ACTGACTCCCTCCCTCC-TCCTTCCGTTCCATGGATGGTGTTTGAAGCGAAGATTTCT-TTTCTGTTTTTTGGATCTGTG
ATTCGGTTGTGCCGTGCCCGTGCCAGAATGGCGTCGGCCGGCGCAGGTTGTACATACTACAGAAGAGGGCAGTTAATTAT
AGCAGTAGAAGT--------AGCAAAGCAATAGGATTAGGATATACTTAGTGTTCGTTGATTCACCACTTTCAGTCCAGG
CAAGTGTGTCCCAGCATTTTACTGTTCTTGCATCATTGTAGAGCACTGGAGGAATC--CAACATCAGCTGAAATTAAGAG
AAGTGATACTGTTCTAGCTCGATCGGTGTTTCTTGCACGAGTCCTGTCGATCCAGTCCGGCCAGTTCCAACTGCTGTTAC
TAACCACCAGAGCCTAGCCGCCACCGTCCGACGCTGGATTCGCCGCCGGACCAAGCC-----------------------
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-----------------------------------------------GCCGGAGAGGGGCAGCAAGGAGAGGGGGCCGAA
GACCAAGTCGCCAGAGAGGAGAACCACGGTGGTCCAGGCCACGCGCGCTGCACGCAGCAGCCAGCCTCCTCGACTTCGGT
CGGCGTCCTAATCTAGCAGCCTGGCA----TTCTCCTCTCCTATAATCTAGCGTCCTATGTCAGTGGGCGTGCAGGGAGG
GAACCCGCAGGCTCTG-CCCAACGCTGCACGAGCTATAGCCATCAGACAAGTGAGTGATCTTGTGCAATGTTAGGATGCA
TTGTC---TATTATATGCATTCCACTGTCTTTTAAAAGATTTCGTAAATTTTTAAGAAATGTTTATGAATTTTT-AAAAA
GTCCATCGACTCAAAATATGTTCATGATTGAAAAAATTTAAAAATTCGTGCCTT-AAAAAATATTCATTGAATTTAGGAA
AATGTTGAAAAATATTCAAAACATTGTTTGGGAATTTGAAAGAAATGTTTTCAAAATTTATAAAAATGTTTCCATGTTTA
T-AAAAATGTTCGCTGATTCAGAAAAACATTTATGAATTCAAAAAATATTCATAAAAA-
>chr7D_91
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----------TTAAATACCGCGAATCTCCCTCCACGTCGTGCCCACATGTCGGACTGTTGACTGGAATTGTCTTTAGGAA
AACAG-------------CCACCAATCGAAGAAAGCAAAGATGGC-----CACTCGTGTGCACACCCACCATGCATCCAG
GCCAGGCCGACAGGCGCACATGCACCCACGGTCCCCGACCCCGGCCCCCAAGTGGTTAGCACTACCTCGTTAACATCTGC
TACCTCTAATAAACCGAGAGAGAATCGATGGACTGTCCGAATAGGAAAATGACAAAACGACTACGAGTCGGCCATTAGCA
CCCCGGCCGGCCGCGACACTCTCTTAACGACTTGTCTTCACGAAAGCATGTGCCAATA---AAGCTATCGTATAGAGCAC
CTCTGATCTCACTAGTCGCTAATGAAATCCTGGTGTCTGATTAACCAACAAAAGCCTTTGTCAAGCCTCAGGTGCGCCTG
ATCCTGCGCGCTAA----AAAGATCCGGACACCTTAAAAGCAAACTGGTGCTAATTTTTTATA-------AATGAAATGA
GTATCTGCAC----------------------------------------------------------------------
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---------------------------------------------------GCACTGTAAACATTGTCCACTCCGGTAC-
--GCTGTGCTGGACTCGGCCAGTGGAGTAGCACCAAACAGTAAAAAGAAGGGTGGCAGGCCCGTGCGCGGT---------
--------------------------------CCTAGTCGAGTCATGAACCACCATGGGAACAAAGACAGAGGAGGTGGT
GGCCTG------------TACTGCA-TTGACCTGGAGCGCACGAGAGGGCGGGCGTG----CGTGCGTGGGCATGGCAGA
GCGACCCTTCACCGCCGTGCCCCCGACACATTTTCCACCGG-----GGCCAGGGCACGCGCG----CGCACACGGCGCTC
TCCTCTGACGACGGCCGAACCACCCTGCCCGGCGGTCCGGGGG-CAGCAGGAATCCGCGCCGCGCTGTCCGCCTCGCTGC
CTGCCGCTGCACGCCCATGTGGCCCTGCCCA--------CGCCCGCATCATCAATTACTAG-------------------
-------------------------TAGCTGGCTCTTGTGTGCCATCCGGATCTGGATCTAG--------CTCCCTCCTC
CATCCCCATATATAAGCGAGCACACCCGTTGGAGCCGTGACCCATCATCACCACTGCCT---TTAGCCGAGAAGAAGAGA
TCACTAGCCAGAGCGAGAGCTCACCATTCAACAACACTACTTCACCAAACCTTGCTCACTTCCAACGATCATCCATCGCC
ACGCCTCGCACAGAGAGTGTGCGTGC--GTGTTGAAGAGAAGATGAAGCTTACCG---GGAGCCAGATGAGAGGAGGAGG
CTTGAGCAAGACCTTGAAGGAGCACAGGGCCAGGCTCTACATCATCAAGCGCTGCGTCGTCATGCTCCTGCGCTGGCACG
ACTGACTCCCTCCA----TCCTTCCGTTCCATGGACGGTGTTTGAAGCCAAGATTTCT-TTTCTGA-TTTTGGATCTGTG
ATTTGATCGTGCTGTGCC------TGAATGGCGTCGGCCGGCGCAGGTTGCACATAGTACAAAAGAGGCCAGTTAATTAT
AGAAGTAGAAGTAGCAGCAAAGCAAAGCAATAGGATTAGGGTATA----GTGTTCGTTGGTT---------CAGTTCCAG
CAAGTGTGCCC---CATTGTACTGTTCTTGCATCACTGAAAAATATACTGGAATGCAACAGCATCAGCTGAAAGAGAAGT
GATCGATACTGTTCTAGC----TCGGTGTTTCTTGCACG-----TGTCGATCCAGTCCGGCCAGTTCCAACTGTTCCCAG
TTCTTTTGCCAGAATATGAGAATTCTTCCAGAATCCGACCCCTAACCAGCTTCTTCTAGAATCTTTGAGCCTCATTTGTT
TCACAATCCTGTCTAATTAGACTCTAACTAGATAGGATTGTAAAACAAATAAGGCTCAAAGATTCTGGGAAAAGCTGAGT
AGGGGTTGGATTCTGGGAAAATCGTCTGATTCTGGCAAAAGAACTGGGCCGGGGAGGGGCAGCAAGGAGAGGGGGCCG--
-------------GAGAGGAGAACCAAGGTGGTGCTGGCCACGCACGCTGCACGCAGCAGCCAGCCTCGACTTCAGTGT-
-------CTACTCTAGCAGCCTGGCTGGCGTTCTCCTCTCCCA-------------TATGTCAGCGGGCGTGCCGGGAGG
GAACCCGCAAGCTCTGCCCCAACGCTGCGCGAGCTAGCCACCAGAC-CAAGTGAGTGATCTTGTGCAATGTTAGGATGCA
TTATTTATTAGTATATGCATTCCGTTGTCTTTGAAAACATTTCGTGAA-TTTTAAAAAATGTTTACGAATTTTAGAAAAG
GTTCATCGACTCAAAAAATGTTCATATTTTAAAAAC--TAAAAGTTTGTGTCTTGAAAGAATGTTAATTAATTTTAGGAA
AATG----------TTCAAAGCATTGTTTGGGAATTTCATAAAATTGTTTC--AAATTTTTAAAAATGTTTCCATGTTTA
TAAAAAATGTTCGCTGATTCA--AAAACATTTATGAATTAAAAAAATGGTCATCAAAAA
>chr7A_176
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---------------AATCGACCAATCGAAGAAAGCAAAGATGGTGCTCTCACGCGTGTGCACACCCACCATGCATCCAG
GCC-----GACAGGCGCATATGCACCCACGGCCCCCAACCCCAAGTG------GGTTAGCACTACCTCATTAACGTCTGC
T--------------GAGAGAGAATCGATGGACTGTCAGAATAGGAAAATGACTGAACGACTACCAGTCGGTCATTAGCA
CCCCGGCCGGCCGCGACACTCTCTTAACGACTTGTCTTCACGAAAGCACGTGCCAATAATGAAGCTATCGTATAGAGCAC
CTCTGATCTCACTAGTCGCTAATGAGATCCTGGTGTCTCGTTAATCAACGAAAGCCTTTCTCAAGTCTCAGGCGCGCCTG
ATCCTGCACGCTAATTGAAAAGATCCTGGTACCTTGAC-GCAAATTGGTGCTAAAAATAAAATAAAAAAGAATGAAAGGA
GTATCTGGTGTCATGGGACATGTCTAAGTATAGATTTTTCACGGCGTTGACGGTTGTGAAGAGAGTCATGGTGGCTACGA
CCGGAGACCTGTAACGGCGAAGAGGAGTTTTGGTTGCATTGAAAACAAGGAGCCGCGATCTCCGAGGTGAAAGCCCAACG
TATGATCTTCATTGGTTGTACTTGGCAATGGTCTTGCAAAGACATTGTTTTTGGATTTCAGACCCTCTCCAGGATGGAAA
ATTTCAAGACCTTGATCGGACGACGACAATTGTGCATTGTTTCCCTCTTGAAGGCGTTGCATCTGGAGAACCCTTCCTGT
AGTCCGAGTGTTGTCTTTGGTGATGGTTAGAGTCTTGATTTTGCGAGTGTTTCATCACCGCGACAGGGTATTTGTTTTTA
TGTTTCTCTATTTTTTTTCCTTGGCTAGGTGCATCATTGATGTCTTTCGATATCCTATTGATGCAGAGCCTGGGTGTAAT
TGGTACTATGTTCGCGATATTAATATATTCTTTTTATCGAAAATTCTGCGTGCAGTGTAAACATTCCCCACTCCGGCGGT
TTGCTGCGCTGGACTCGACTAGTGGGGAGTG-CCAAACAGTAAAGAGAACGGTGACAGGCCCTAGTCGGGGAGTCCAGAA
ACAGTAGAAAGAAGAGGAAGAAAACGGTGAGCCCTAGTCGAGTCACGAACCACCATGGGAACAAAGACAGAGGAGGCGGT
GGCCTGTCCTGTGTCCTCTACTGACCTTGACCTGGAGCGCACGAGAGGGCGTGCGTGCGTGCGTGCGTGGGCATGGCAG-
-CGACCCTTCACCGCCGTGCCCCCGACATATTTTCCACCGGGGCCAGGGCAGCGCGCGCACGCACGCGCACACGGCGCTC
TCCTCTGACGACGGCCGAACCACCCTGCCCGGCGGTCCGGGGGGCAGCAGGAATCCGCGCCGCGCTGTCCGCCTCGCTGC
CTGCCGCTGCACGCCCATGTGGCCCTCCCTCCCCACGCTCGCCCGCATTATCAATTGCTATCTTCTTCCACCCTCGTCCA
TCTCCCTCACCTTCAACCCTACTACTAGCTGGCTCGTGTGTGCCATCCGGATCTGGATCTAG--------CCTCCTCCCC
CGTCCCTATATATAAGCCCACCCTCGTGCCGTGTTCCGCCGTGCCG--------------------------AGAAGAAA
CCATTAGCCAGAGTCAGAGTTCAG-------CAACACTCCTTCACTAAACCTTGCTCACTTCCAACGATCATTAGCC---
---------------AGAGTGAGAGA--GTGTTGAAGAAAAGATGAAGCTTATGGGGAGGAGCCAGAGGAGAGGAGGAGG
CTTGAGCAAGACCTTGAAGCAGCACAAGGCCAGGCTCTACATCATCAAGCGCTGCGTCGTCATGCTCCTGCGGTGGCACG
ACTGACTCCCTCCCTCCCTCCTTCCATTCCATGGATGGTGTCTGAAGCGAAGATTTCTTTTTCTGA-TTCTGAATCTGTG
ATTTGATCGTGCT-TGCC------AGAATGGTGTCGGCCGGCGAAGGTTGTACATA---CAAAAGAGGCCAGCTAATTAT
AGAAGTAGAAGTAGCAGCA-----AAGCAATAGGGCTAGGATATA----GCGTTCGTTGATTCACCACATCCAGTCCCAG
CAAGTGTGTCC---CATTGTACTCTTCTTGCATC----------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS------S-S----------------------------------------------------S-S------
-----SSSSSSSSSS-----S--------S-----S--SSSS-S-S---SS-----------------------------
--------------S---------------------------S---S---------------------------------
--------------SS-------------S-----------S--S-----------------------------------
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----------------------------------------------------------------------S---------
--------------------------S------------------------------------------S----------
---------------------S-----------------------------------------------S----------
--------------------------------------------------------------S---------S-------
----------S-----------------S---------------------------------------S---S-SS----
-----S---------S---SS---SS---SS-------S-----S--S--------------SSSSSSSS----------
-----------------------SSSS--------------------S---SS-SSS--SSS--S---------------
-----S-------------------S-----------S-------------------S----------------------
-----S-S-----S-----S------SS----------------------SS----------------------------
--------S-----------------------------------------------------------------------
-----------------------------------------------------------------SS-------------
---S-S-S----S-----SSSSSS--------------------------------S----S------S-----------
--S------------------------------------------SSSS-------------------S-S------SS-
-----------SSS----S----------------S--S-S-SS-SSSSS-S-SS-----S------------SSS-SSS
S-SS--------------SSSS-----------------SSSSS-----------------------------S-SSS-S
-SSSSSSSSS--SS--SSS-SSSS-S---SSSSSSS--SS-SSSS--S-SSSSSS-S-----------------------
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----------------------------------------------------S-------------------------SS
SSSSSSSSSSSSS-------------S------S-S--------S-----------------------SS-SS-SSS-SS
SSSSSSS---S--------------S---------------S-SSSSSSSSSSSSS--------S--------S------
---------S------------------S-------SSSS-SSS-SS---------------------------------
--S-S-----S------------SS-------S----S-------S--S------S---------S-------S-----S
--S-------------S--------SS--S-----SSS-----S--S---S-------S---S--S---S-S--------
----SSSSSSSSSS------S----------------S-S-S--S-----SSS------S--------------------
---------------------SS----------------S-------SS----S-----
>forward_56
------------------------------------TTTATCCCAAACGGACGGGG------------------------
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>reverse_2311
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----------------------------------------------------------------------TCAGTCCAGG
CAAGTGTGTC----------------------------------------------------------------------
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