>input_sequence_87516
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-----------------------------------ATGAGGGTGGGTGCTCATGATCTGAAGCTCAAGGGGCTCAAGAGG
TCTCTCAAGGAGCACAAGGCCAGGCTCTACATCATCCGTCGCTGCGTCGTGATGCTCCTAAGCTGGCATGACTGA-----
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>chr5B_1_TraesCS5B01G176800
TGCAG---------------------------------------------------------------------------
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------ATTTCGTATGAACAAGACTACTGCCATTGCTCCCCTAGATTGTGTTTAAGATTCTTTGGATCCAAACATTTCCC
TTTCTAAAAAGGGAAAGGAAAACACTGATCGATTAGCAGCAGCCAACATGTAACTGATGGGCAGGTTCGATGTACATAAC
CGGAGG---------GAGCTTACTTGCATCTGTTTGTCTGCTAAGCTTGCGTTCTGGGAGCAGGGTTTCAGTTGACATTC
ACAACTGTGCTGACCTTGCATAACAAGCAGTAGTTGACTATGGAAGTTATTGTGATACCCCTGTACAAGTAATTGGTGCT
GACTTTTCTACCTCCACAAATAAAATATAACCTAATGTTTGACATTGGCTTAGTTAGGTGCCCTACATGCTCTGTTTACG
TTATCCCTAAACGGCTAAACCAGACAAGCCATGTTGTGTCAACAAAGCAAACATTGCAGATACATGCTGTGCTTACCATG
TTGTGTTACTCAGT------------------------------------------------------------------
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------------------------------------------------------------------------------TT
TTGTCAACCCTTTGGTGGACATATAGGAATGGTTTGCGCCGGCGATATTTTTGAGCTGTTTAATCCTTGAATGGAAAACT
AAAATTAGGTATATGCACTATAACATGAGATTTCTTTGGTACCCATGGTAGTGGCTCTATCTGGTATCCCATTGGGAGCT
TAGTCATCCTTATCATAAACTTCTTTTATTTATCCATCATGCGGTGCAGATGATACTGCAATGCGATTACCCTATTATTT
ATCATCGGGTCAATCCGGCGTCAGGAAATTGAACTTAGATTACTCCAGGATCACATAAGACTTTCTTTTCTTTATGCAGA
CATGGACGCAGCGATAAGTTAGTTTATGGAAATATGTGCACAAGCATGGCGTTGAAAGAACCCTCATCAGCTGACACAGG
GGCATGGCAACT-GCCTATATAAACCATACTACTACAAACTCCAAAAACCACAACACAAACCAGAGTCTGGGATTCCAAA
CCCAAGAAGCTACCACATTTCTAGATCATCAGAAGATGAGGGTGGGTGCTCATGATCTGAAGCTCAAGGGGCTCAAGAGG
TCTCTCAAGGAGCACAAGGCCAGGCTCTACATCATCCGTCGCTGCGTCGTGATGCTCCTAAGCTGGCATGACTGATCAAG
CGATTCGGAGTGAATTTCTTCACAGCTTCTCTTACTTCTCTATCTGACTGGCCAACCTAGTGGCTGAAATTTTGGGTCTC
TATCTCTGATGTATGTAACAGCTGTATATAACCTGTCAAAGTAGGAAGACTGGAAATGAAAGGCAACTTCTTTCTTGATG
TGGTATCTCCAGAAATAATCTGAGGTTTATACCCCTTTGTCCCTTTTCTTCTTCTAAAACATGGCATGCATTTTGATGTG
TGTTCGAGAAAAAAAAAGGAAATCAAAATTTTCTTGGCGCCGGGAACA-----TAATCTAGCATATACCACAGGTGCAGT
GGAGGGAGGTGAGACCAGCAGATTTGATATGGAATTTGTCATCCC-ATCATTAGTTGGTACCATTTCCAAGTCCGAGGCT
GATGGCTTTTGATGCTTGATGCTCAATGCACCGATTTCTCTGAATGTTCAC-CTCACTCTCCTCTTATCAAACCTGCACC
GAGTGTGATATCTCAGCAGTTTACAGGACAGTGGCCCGAGTTTAATTCCTACTGCAACGGACCCGGTTTATGGGGTTTTC
GACGCGACCATGATCGGCTTGCCCTAGCAGTCTAATTAGCTCCCTACCCCAAAATTACAAAACAAGAGACGCGTCCGAGC
AGCGGACACACA-TTTCTTTGCTTGAGTACACCAATAATATCCTAACCACAATTAGAAAAGATCTCAAAAGCTGGTCAGT
GTGTAGGTGCTTGTGGGAGGGAGCACATAGCTTTTGCCAAAGCACAAAACAGTGCCTTCCTCGTTTTTGAAATAAAGGCT
GATGGTGAAATGAACCATAGTGAAATGCGAGCCCACTTTGTGAAAGCTGATCAGTGCTCTGACTGTTCTACAGTTCCTTT
TTGGCTCTTCTTTTGGGGATTACACATCTTCTAGATCTTTCTTCACATGTTTG-TGTTGGTTTTGCTTTT-CTTGGTTTC
TCTCAGAAACTCTTCGCCTTTGAATGATTAAGCTGATACATCATT
>chr5A_1
TGCATATTTCACTTGAACAAGTCTACTGCCATTGCTCTCCTAGATTGTGTTTAAGATTCTTTAGATCCATACTTTTTAAA
AAAGGAAAGGAAAACACCTGTTTGATTAGCAGCAGCAAACATGTAACTGACGGGCAGGTTCGATGTACATAACCGGAGGG
GTTTGTTTAGAGCTTATTTGCATCTGTTTGTCTTACAAGCTTGCCTTTTGGGAGCTTATTTACATGTTCAGGCTCTCCTA
GATTGTGTTTAAGATTCTTTTGATCCAGAGCCAGAATGGTTTACATAGCAGCAGCCATCCAACCATTCCATGTAGCTTGA
AAAACTGAACACCGGCCGACAGGTACATTGTACTACATAACTTGTAATTCAAATGGCCAATTTGTTTTTGTTTAGAGCTA
GCTTGTCTTTCTTTGTCTGCCAAGCTTGCCAGGTTATCATACTGTGCTACTTTTCAGATGAAGGTGTTTACTATGGAATG
CTTTAGTTTGACTCCTTACCCTCCTGCTTGACATTCTAATTTGTTATTCTAAACAGGTTGACTTTGGAGGTTAATGTGCT
ACACTGATACTCTACTCTAAAAAAGATCAGTTTTATTTTTTCATGAACAAAAAGATATTGGGTATCTTCCTATCGAAGAA
ATTTTGCAGAAAATATAAAATTGAAGAAATATTGAGAAAATATTTCAAACTAAATGTTCCATTAAGAACTTCCGATCCAA
CATCCACTCACAGTAAAGGCTCAAGTATTTCAAGCTGAGAGATCAGAAACCTTGCCTTAGGAAAGTTTTACATTTAACTG
GTTCGTGGAAGGACTTTCAACTAATTAAAGAAAACTTCCTAATCTCAAACTTTTGGAGCAAAAAAGAGGCTATAGATGAT
TCATCACTAGCTAAAATTTCATGAGAAGAGTGTTTGCAACTGTTTATAGAGTTTTGTTTTAAGTGTTTATTACGGAACTA
GTTCAAGTGTAATTCAAATTTAGTAACACCAACATGATTTATTTATTTATTTAACGATTCAGAATCCCAACATGACTTAA
CTAACCCCCATGTTTGGTTGAAATATTTTTCTGTTATAGCCCAACAGGCTAAACATGCAATACAAGTAATCCATATTGCA
CTCTCTGTTGGAAAAGGCAGTGCCTAGGAGGCGCTTAGGCACGCCTAGGCGCTAGGCGATGGCCAAACGCCTCACCTAGG
GCATAAATGGAAGTCTAGGAAGGGCAAGCAACAAATTGTTTACCCAAGCGAGAAATCATGCCATATTGCACTAAAATGCC
AAACATGACACATTCAAATGGTAGTAGCTGGTAGTTACCTTATTTATCTGGCCTAAATTAACATCAATACACATATAGTA
AGCCCAATAACCCTGATAGTAGAAGCTATATTACTGCCTAGGCCGTGCCTAGGACGCTTAAGCACCGCCTAGGCACTAGG
CGAAGGCCAACCGCCTCGCTTACGCCTACCGCCTTTTCCAACCTTGATTGCACTTGTCAGATCTTTGTTCTCATATTCCT
TTCAACAAGAAGCCATGCTTCCACATTCAATTCCATATTCTACGGAAGAAAATTTGCATCCATTTCCGCTCCGAAACTAA
CCAAAAAGAGATAGCTCCGGGTTGTCTGTCTCAGTTTTTGGTCCGGATAGGACAAAAAGAACTGGTTCCTACTTTCAACT
AGAATGAGATAATTATATTGGTAGAAATTTCAATTAGGGTATGGGACCTTCCACCCAGATTCGACCTGTCACCCTCTATT
GTCATTGGGAAGAAGTGGCACATTACAAGGGCTGCCATCTAGCTATGAGGTATAAATGTGCATTGTACATTTACTTCTTT
TTTCTTCTGAAGAAAAGTTAAATGTACATCCTAATTTGTTGCTATCTGTTTAAATTTTGCAGTGTCAGTTTGCGTGGACA
GAAAGAAGAATTACAAAGTTGTGACAAATTTAATTCGAATGAAAACGGTAGCTCTTCTATAGTTTGTATGGACAACTTTA
TTGCAGATTTCGTATGAACAAGACTACTGCCATTGCTCCCCTAGATTGTGTTTAAGATTCTTTGGATCCAAACATTTC--
----TAAAAAGGGAAAGGAAAACACTGATCGATTTGCAGCAGCCAACATGTAACTGACGGGCAGGTTCGGTGTACATAAC
GGGATG---------GAGCTTACTTGCATCTGTTTGTCTGCTAAGCTTGCGTTTTGGGAGCAGGGTTTCAGTTGACATTC
ACAACTGTGCTGACCTTGCATAACAAGTGGTAGTTGACTATAGAAGTTATTGTGATAGCCCTGTACAAGTAATTGGTGCT
GACTTTCCTACCTCCTCAAATAAAATATAACCTAATGTTTGACATTGGCTTAGTTAGGTGCCTTACATGCTCTGTTTACG
TTATCCCTAAACGGCTAAACCAGACAAGCCATGTTGTGTCAACAAAGCAAACATTGCAGATACATGCTGTGCTTACCATT
TTGTGTTACTCA--------------------------------------------------------------------
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-TGTCAACCCTTTGGTGGACATATAGGAATGGTTTGCGCCGGCGATATTTTTGAGCTGTTTAATCCTTGAATGCAAAACT
AAAATTAGGTATCTGCACTATAACATGAGATTTCTTTGGTACCCATGGTAGTGGCTCTATCTGGTATCCCATTGGGAGCT
TAGTCATCCTTATCATAAACTTCTTTTATTTATCCATCGTGCGGTGCAGATGATACTGCAATGCGATTACCCTATTATTT
ATCATCGGGTCAATCCGGCGTCAGGAAATTGAACTTAGATTACTCCAGGATCACATAAGACTTCCTTTTCTTTATGCAGA
CATGGACGCAGCGATAAGTTAGTTTATGGAAATATGTGCACAAGCATGGCATTGAAAGAAGCCTCATCAACTGACACAGC
CCACATAGAAGGCGCCTATATAAACTGTACTACTACAAACTCCAAAAACC-CAACACAAACCAGAGTTTGGGATTCCAAA
TCCAAGAGGCAGCCACATTTCTATATCATCAGAAGATGAGGGTAGGCGCTCATGATCTGAAGCTCAAGGGGCTCAAGAGG
TCTCTCAAGGAGCACAAGGCCAGGCTCTACATCATCCGTCGATGCGTCGTGATGCTCCTAAGCTGGCATGACTGATCAAG
CGATTCGGAGTGAATTTCTTCACAGTTTCTCTTACTTCTCTATCTGACTGGCCAGCCTAGTGGCTGAAATTTTGGGTCTC
TATCTCTGATGTATGTAACAGCTGTATATAACCTGTCAAAGTAGGAGGACTGGAAATGAATGGCAACTTCTTTCTTGATG
TGGTATCTCCAGAAATTTTCTGAGGTTTATACCCTTTTTTCCTCTTGCTTCTTCTAAAAAATGACATGCATTTTGATGCG
TGTTTGAGAAAAGAAAAGGAAACCAAATTTTGCTTGGCATGCGGAATATCATCTACTGTAGCACTTACCACAGGTGCAGT
GCAGGGAGGTGAGACCAACAGATTTGATATGGAATTTGTCACCCCCATCATTAGTTGGTACCATTTCCAAGTCTGAGGCT
GATGGCTTTTGATGCTTGATTCTCAATGCACCGATTTCTCTGAATGCTCACACTCACTCTCCTCTTATCAAACCTGCACC
GAGTGTGATATCTCAGCAGTTTACAGGACAGTGGCCCGAGTTTAATTCCTACTGCAACGGACCCGGCTTATGGGGTTTTC
GACGCGGCCGTGATCGTCTTGCCCTAGCAGTCTAATTGGCTTCCTACCCAAAAATTACAAAACAAGAGACGCGTCCGAGC
AGCAGACGCACATTTTCTTTGCTTGAGTACTCCAATAATATCCTAAGCGCAATTAGAAAAGATCTCAAAAGTTGGTCAGT
GTGTAGGCGCTTGTGGGAGGGAGCACATGGCTTTTGGCAAAGCAGAAAACAGTGCCTTCCTCGTTTTTGAAATAAAGCCT
GATGGTGAAATGAACCATAGTGAAATGCGAGCCCACTTTGTGAAAGCTGATCAGTGCTCTGACTGTTCTACAGTTCCTTT
TTGGCTCTTCTTTTGGGGATTACACATCTTCTAGATCTTTCTTCACATGTTTG-TGTTGGTTTTGCTTTTTCTTGGTTTC
TCTCAGAAACTCTTCTCCTTTTAATGATTAAGCTGATACATCGTT
>chr5D_1
TGCAG---------------------------------------------------------------------------
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------ATTTCGTACGAACAAGACTACTGCCATTGCTCCCCTAGATTGTGTTTAAGATTCTTTGGATCCAAACGTTTC--
----TAAAAAGGGAAAGGAAAACACTGATCGATTAGCAGCAGCCAACATGTAACTGACGGGCAGGTTCGATGTACATAAC
CGGAGGGTTTATTTAGAGCTTACTTGCATCTGTTTGTCTGCTAAGCTTGCGTTTTGGGAGCAGGGTTTCAGTTGACATTC
ACAACTATGCTGACCTTGCATAACAAGTGGTGGTTGACTATGGAAGTTATTGTGATACCCCTGTACAAGTCATTGGTGCT
GACTTTCCTACCTCCTCAAATAAAATATAACCTAATGTTTGACATTGGCTTAGTTAGGTGCCCTACATGCTCTGTTTACG
TTATCCCTAAACGGCTAAACCAGACAAGCCATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATATT
ACCACTCAAATGGAAGGTCAGAGAATTACAGCAGAGGTTCTGGTACAAATTCAGCTAGAAGGGAATTCTGGTACTTAGTT
TTGTGAACCTTTTGGTGGACAGATAGGAATGGCTTGTGCCGGTGATATCTTTTAGCTGTTCAATCCTTGAATGGAAAATT
AAAATTAGGTATCTGCACTATAACATGAGATTTCTTTGGTACCCATGGTAGTGGCTCTATCTGGTATCCCATTGGGAGCT
TAGTCATCCTTATCATAAACCTCTTTTATTTATCCATCGTGCAGTGCAGATGATACCGCAATGTGATTACCCTATTATTT
ATCATCGGGTCAATCCGGCGTCAGGAAATTGAACTTAGATTACTCCAGGATCACATAAGACTTTCTTTTCTTTATGCAGA
CATGGACGCAGCGATAAGTTAGTTTATGGAAATATGTGCACAACCATGACATTGAAAGAAGCCTCATCAGCTGACACAGC
CCACACAGAAGCCGCCTATATAAACCGTACTACTACAAACTCCAAAAACC-CAACACAGACCAGAGTTTGGGATTCCAAA
TCCAAGAGGCAACCACATTTCTAGATCATCAGAAGATGAGGGTGGGCGCTCATGATCTGAAGCTCAAGGGGCTCAAGAGG
TCTCTCAAGGAGCACAAGGCCAGGCTCTACATCATCCGTCGATGCGTCGTGATGCTCCTAAGATGGCATGATTGATCAAG
CAATTTGGAGTGAATTTCTTCACAGTTTCTCTTACTTCTCTATCTGACTGGCCAGCCTAGTGGCTGAAATTTTGGGTCTC
TATCTCTGATGTATGTAACAGCTGTATATAACCTGTCAAAGTAGGAAGACTGGAAATGAAAGGCAACTTCTTTCTTGATG
TGGTATCTCCAGAAATAATCTGAGGCTTATACCCTTTTGTCCCTTTTCTTCGTCTAAAACATGACATGCATTTTGATGTG
TGTTCGAGAAAAAAAAAGGAAATCAAAATTTTCTTGGCGCCGGGAACA-----TAATCTAGCATATACCACAGGTGCAGT
GCAGGGAGGTGAGACCAACAGATTTGATATGGAATTTGTCATCCC-ATCATTAGTTGGTACCATTTCCAAGTCCGAGGCT
GATGGCTTTTGATGCTTGATGCTCAATGCACCGATTTCTCTGAATGTTCAC-CTCACTCTCCTCTTATCAAACCTGCACC
GAGTGTGATATCTCAGCAGTTTACAAGACAGTGGCCCGAGTTTAATTCCTACTGCAACGGACCCGGCTTATGGGGTTTTC
GACGCGACTGTGATCGGCTTGCCCTAGCAGTCTAATTAGCTTCCTACCCCAAAATTACAAAACAAGAGACGCGTCCGAGC
AACAGACACACA-TTTCTTTGCTTGAGTACTCCAATAATATCCTAACCGCAATTAGAAAAGATCTCAAAAGTTGGTCAGT
GTGTAGGCGCTTGTGGGAGGGAGCACATGGCTTTTGGCAAAGCACAAAACAGTGCCTTCCTCGTTCTTGAAATAAAGCCT
GATGGTGAAATGAGCCATAGTGAAATGCGAGCCCACTTTGTGAAAGCTGATCAGTGCTCTGACTGTTCTACAGTTCCTTT
TTGGCTCTTCTTTTGGGGATTGCACATCTTCTAGATCTTTCTTCACATGTTTGGTGCTGGTTTTGCTTTT-CTTGATTTC
TCTCAGAAACTCTTCTCCTTTTAATGATTAAGCTGATACATCATT
>SNPs
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------------------------------------------------------------------------------SS
SSSS-----------------------------------------------------S----------------------
-----------------------------------------------------S--------------------------
---------------------------SS---------------------------------------------------
------S--------S----------------------------------------------------------------
-------------------------------------------------------------------------------S
------------SS------------------------------------------------------------------
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------------S-------------------------------------------------------------------
--------------------------------------S-----------------------------------------
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--------------------------------------------------S---------S------------------S
SSSSSSSS--SS--------------S-----------------------S----------------S------------
S------S--S-----------------------------------S---------------------------------
-----------------------------------------S--------------------------------------
-------------------------S----------------------------S-------------------------
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----------------------------------S----------------------------S----------------
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-S---------------S--------------------------------------------------------------
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------------------------------------------------------------------S-------------
---------S-------------------------------S--------------------------------------
---S--------------------------S-----------------S----------------------S--------
-------S--------------------S-------S----------------------------------------S--
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---------------S-----S-----------------------
>forward_3120
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------------------------------------------------------------CCCTCATCAGCTGACACAGG
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>reverse_4072
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-----------------------------------------------------------------------CTGGTCAGT
GTGTAGGTGCT---------------------------------------------------------------------
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---------------------------------------------
