>input_sequence_87503
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-----------------------ATGAAGCTTATGGGGAAGAG---CCAGAGGAGTGGAGGAGGCTTGAGCAGGAGCCTC
AAGGAGCACAGGGCCAGGCTCTACATCATCCAGCGCTGCGTCGTCATGCTCCTCCGCTGGCACGACTGA-----------
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>chr7A_1_TraesCS7A01G516500
AGTGAGGGATGAAGTGGGGAAAGGGTTCCGGGACGGGGGCTTTGGGTGGGCTGGATGTGCCGAAGTCTGACTTGGCGGGC
GTCCGGACTCCCCCAAATCTTCTCAGGTTTGTTTTTGGTTTGGTGGAATTTGGACGTGCAAACCACGACAGTTTGATGCA
AAGCGTTGGATGACACAAAGTGTTTGAACATTTTTTCCCAGATTTTAGCAGCGTTTTGATGCAATGATGTTGGAGATGCC
CTAAACATTCTCCACCCCTTGTTTCAAAAAAAAAAAAACATTCTCCACCCCAGCCGGTTTGCTGCGGTGG-CTCGCAGTA
GGCCGTGACTAGGAACGACAGGTG---AAAGAAAAAGAAAGGAGGAAAACGGTGA--------CCCGCGCACGGTCCGAT
CGATCAGATCCGAGTCATGAACCACCATGGGAACGAGACAGCGGAGGTGGGAGAGGTTGTGGCCTGCACTGGCCTGAGCT
GGAGCGCACGAGGACCAAGCGTGGA------GCTAGCGGTC-----GACGCACGAGA----GGGCGTGCGTGGGCATGGC
AGCGACCCCTTCGCCGCCGTG-CCCCGACACATTTTCCACCGGGGCCAGG----CCGGGGCAGCGCACCGCACGC----A
TGCACGCCCTCTGACGCGGAGC---------ACGACGGCCGAGCCACCTTGCCCGGCGGTCCCGGGGGCAGCAGGAATCC
GCGGTGCGCTGTC------------TGCC----------CATGTGGCCCTCCCTCCCTCCCTCCCCACGCTCGCCCCGCA
TTATCAACTGCTAAGCCGCCGTCGTCTTCTTCCTTCTACCTCT-------TTCATCCCTA----CCAGCTACCTAGCTCG
TGTGCGCCATCTGGATCTGAATCTAGCCCCCTCCTCCGTCCCTATATATAAGCCCACCCGTTGCT------------TGC
CGAGGAGAAATCATTGGCCAGAGCGAGAGTTCAGCAACACTCCTTCACTACACCTCGTTCACTTCCAACGATCTCCAGTT
CTCCACACCAC---------------------------------------------------------------------
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----------------------------------------------------------------AGAGAGAGGGAGAGAG
AGTGTGTGTGTGTTGAAGCAAAGATGAAGCTTATGGGGAAGAG---CCAGAGGAGTGGAGGAGGCTTGAGCAGGAGCCTC
AAGGAGCACAGGGCCAGGCTCTACATCATCCAGCGCTGCGTCGTCATGCTCCTCCGCTGGCACGACTGATCGAC-TCCCT
CGCTCCATGGATGGA------------TCCGTCCTTCCATTCCATGGATGGTGTTTGAAGCAAA----GATATAC-TTTT
TGGTTTTGGGTCTGTGATTGTGCTG----TGCCACAATGGTGTCGGCAGGTAGTACTTG----TACATAAGAGGCGAGTC
AAATTATAGAAGTAGAAGTAGC------AGCAAAGCAATAGCGACCCTTCAGCAGGTGTA--------------------
----------------------------TCCCATTGTACAATTACATCAGTGCCGAATACTGGA---ATGCAATATATCA
GCTGAAAGATAAGGAATCATTGGACCAATCGCTTATCGGCCCGTTCCAAAACTCGTGTGATGCTAGCTGATCTCGGTGTT
TCTTGCGCGTGTTCCATCTTTTCTTCTATAGATCACATCTACTAGTTACTTTTTTTCCCCACCATGTCCAGCACCGCATC
CACAAAGAACTCACCAGAATAATTACCTGCTGCGGAGCGCCACCGTGCTCCAAGAATTCTGAGGAGTCCAGAGAGAGGCA
ATTCCTCAAGGAGGAGGCCAACATGGCACCGCCACGCACTGTCGCCGTCGT--------------------------TCA
ACCTGTGGGTGGCCGTGGCCCAGGAGCAGCAGGTCCTCGGCTACTTCCATGGCCTCAGTCTCGTGAGAAATTCCCGCTGC
CAAGGTCTTAGCTCTGAAGCGGCAATGACAGAGATGTTCGCCG----CTCACACGAGGGCACGCTCGGA-----------
TAGCTCCTGCCAGTATGCAAGAGCCAAGAGGGGTTCCCTCAGCGGCGCACCGGACATCTCTCCAGGATCAAGACGCTCAC
GGATGACCCA--------GCGATCTTATTTCAAAGAGAACTTCACTAACCAACTACAAGATCTAAATGCTCGTGCCTATT
TACTTCTTAATTTCCTTTTCTTCTCCTCCGGTTTCG-----------------CTGGGCCCGCCCATTGTCGAACCAGTC
TTTTTTCCACTAT---------TTCTTTTTTCAATTTTTTGTTTCTTTTTCATTTTTTTGTTTTACCTTTTTCGTTGCTT
T-TCCTTTTCAAAAAATGCTCGCTCTTG
>chr7D_294
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-----------------------------------------------------CCGGTTTGGTGCGTTGGACTCGAAGCA
GGCCGTGTACGTCAACGACAGGTATAAAAAGAAAAGAAAAGGAAGATAGCGGTGACAGACACGCCCGCGCACGGTCCGAT
CGATCAGATCCGAGTCACGAACCACCATGGGAACACGACAGAGGAGGTGGGAGAGGCTGTGGCCTGCACTGGCCTGAGCT
GGAGCGCACGAGGACCGAGCGTGGATCTAGCTCTAGCGGGCCGCCAGACGCACGAGAGGGCGGGCGTGCGTGGGCATGGC
AGCGACCC-TTCACCGCCGTGCCCCCGACACATTTTCCACCGGGGCCAGGACCGCCGGGGCAGCGCACCACACGC----A
CGCT----CTCTGACGCGGAGC---------ACGACGGCCGAGCCACCTTGCCCGGCGGTCCCGGGGGCAGCAGGAATCC
GCGCTGCGCTGTC------------TGCCGTTGCACGCCCATGTGGCCCTC-------CCCTCCCCACGCTCGCTC-GCG
TTATCAATT-CTAAGCCGCTGTCGTCTTCTTCCTTCATCTCCTTCACGGCTTCACCCCTA----CCACCTACCTAGCTCG
TGTGTGCCATCTGGATCTGAATCTAGCTCCCTCCTCCATCCCTATATATAAGCCCACCCG----T------------TGC
CGAGAGGAAATCATTAGCCAGAGTCAGAGTTCAGCAACACTCCTTCACCACACTTCGTTCGCTTCCAACTATCTCCACAC
CACAGAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGTGGTGAAGCAAAGATGAAGCTTATGGGGA---G---CCGGAGGAGTGGAGGAGGCCTGAGCAGGAGCCTC
AAGGAGCACAGGGCCAGGCTCTACATCATCCAGCGCTGCGTCGTCATGCTCCTGCGCTGGCACGACTGACTCC-----CT
CGCTCCATGGATGGATGGACGGATGGCTCCGTCCTTCCATTCCATGGATGGTGTTTGAAGCAAGCAAGGATATAC-TTTT
TGATTTTGGGTCTGTAGGAAGGAAGGTGTACGCACTC--------GCAGTTAGTACTTG----TACATAAGAGGTCAGTT
-GATTATAGAAGTAGAAGTAGC------AGCTAAGCAATAG---------------------------------------
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>chr7B_344
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---------------------------AAAGAAAAGAAAAGGAAGATAACGGTGACA----CGCCCGCGCACGGTCTGAT
CGATCAGATCCGAGTCATGAACCACCATGGGAACACGACAGAGGAGGTGGGAGAGGCTGTGGCCTGCACTGGCCTGAGCT
GGAGCGCACGAGGACCGAGCGCGGA------TCTAGCGGTCCGCCAGACGCACGAGAGGGCGTGCGGGCGTGGGCATGGC
AGCGACCC-TTCGCCGCCGTG-CCCCGACACATTTTCCACCGGGGCCAGG----CCGGGGCAGCGCACCGCACGCGCGCA
CGCT----CTCTGACGCGGAGC---------ACGACGGGCGAGCCACCTTGCCCGGCGGTCCCGGGGGCAGCAGGAATCC
GCGCTGCGCTGTC------------TGCCGTTGCACGCCCATGTGGCCCTC-------CCCTCCCCACGCT---------
-TATCAATTGCTAAGCCGCCGTCGTCTTCTTCCTTCTACCTCT-------TTCATCCCTACGTCCCACCTACCTAGCTCG
TGTGCGCCATCTGGATCTGAATCTAGCCCCCTCCTCCATCCCTGTATATAAGCCCACCCG----T------------TGC
CGAGAAGAAATCATTAGCCAGAGTGAGAGTTCAGCAGCACTCCTTCGCTACACTTCGTTCACTTCCAACGATCTCCACAC
CACAGAGAGAC---------------------------------------------------------------------
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--------------------------------------------------------------------AGAGAGAGAGAG
AGAGGGTGTGTGTTGAAGCAAAGATGAAGCTTATGGGGA---G---CCGGAGGAGCGGAGGAGGCCTGAGCAGGAGCCTC
AAGGAGCACAGGGCCAGGCTCTACATCATCCAGCGCTGCGTCGTCATGCTGCTGCGCTGGCACGACTGACTCCGATCCCT
CGCTCCATGGATGGA------------TCTGTCCTTCCATTCCATGGATGGTGTTTGAAGCAAA----GATATAC-TTTC
TGATTTTGGGTCTGTGATTGTGCTG----TGCCAGAATGGTGCCGGCAGGTAGTACTTG----TACATAAGAGGTCACTT
-AATTATAGAAGTAGAAGTAGAAGTGGTAGCAAAGCAATAGGATCGATCTTGTGTTCGTCGATTCACCACCTCCTCTGCC
CTCCACCCCCTTGCAGCAAGTGTGTCTGTCCCATTGTACAGTTACATCACTGCCGAATACTCGTGTGATGCAATATATCA
ACTGAAAGAGAAGGAATCACCGGATCAATCGCTTGTC--CCCGTCCCAAAGCTCGTGTGATGCCAGCTGATCTCGGTGCT
TCTTGCGCGTGTTGCCATCTTCCTTCAATAGATCACGTCTAGTTCCTTTTTTTTTCCCACCACATGTCCAGCACC-----
---------------------------TGCTGCGGAGCGCCATCGTGCTCCAAGAAATCAGAGGAGTCCAACATGG----
---------------------CAGGGCACCGCCACGCACTGTGGCCGTCGCCGTACACGGGAAAGATGTTGAGCAGATCA
ACCTGTGGCTGTGGGTGGCCCAGGAGCAGCAGATCCT----------CATGGCCTCGGTATCGTGAGAAATTCCCGCTGC
CAAGGTCTGAACTCTGAAGC-GCAATCACAGAGATGTTCGGCTCTCTCTCACACAAGGGCACGCTGGGTGAACACTCCGG
TAGCTCTCGCCAACATGC--------AGAGGGGTTCCCTCAGCGCG---CCGGACATCTCT---------AGACGATCTC
GGATGACCCGGGCACCCGGCAATCTTCGTTTAAAGAGAACCGCACTGACAAACT----------------------TATT
TACTTCTTTTTTTTCTTTTCTTCTTATACCGTTAGTTGAAGCCCCCGGTTTTACTGGGCCGGCTGATTGCCAAACCGGTC
TTTTTCCCACTATTTTCATTCCTTTTTTTGTACGTTTATTGTTTA-TTCTCATTTTTTTGTTTTTCCTTATTCATTACTT
TTTCCTTTTTCAAAAATGCT--------
>chr7A_517
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---------------------------------------------------------------GCGTGCGTGGGCATGGC
AGCGACCC-TTCACCGCCGTGCCCCCGACATATTTTCCACCGGGGCCAGGGCAG------------------CGCGCGCA
CGCA----CGCGCACACGGCGCTCTCCTCTGACGACGGCCGAACCACCCTGCCCGGCGGTCCGGGGGGCAGCAGGAATCC
GCGCCGCGCTGTCCGCCTCGCTGCCTGCCGCTGCACGCCCATGTGGCCCTC-------CC-TCCCCACGCTCGCCC-GCA
TTATCAATTGCTATCTTCTTCCACCC----TCGTCCATCTCCCTCAC--CTTCAACCCTA----CTA-CTAGCTGGCTCG
TGTGTGCCATCCGGATCTGGATCTAGCCTCCTCCCCCGTCCCTATATATAAGCCCACCCTCGTGCCGTGTTCCGCCGTGC
CGAGAAGAAACCATTAGCCAGAGTCAGAGTTCAGCAACACTCCTTCACTAAACCTTGCTCACTTCCAACGATCATTAGCC
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------------------------------------------------------------------------------AG
AGTGAGAGAGTGTTGAAGAAAAGATGAAGCTTATGGGGA---GGAGCCAGAGGAGAGGAGGAGGCTTGAGCAAGACCTTG
AAGCAGCACAAGGCCAGGCTCTACATCATCAAGCGCTGCGTCGTCATGCTCCTGCGGTGGCACGACTGACTCC-----CT
CC------------------------CTCCCTCCTTCCATTCCATGGATGGTGTCTGAAGCGAA----GATTTCTTTTTC
TGATTCTGAATCTGTGATTTGATCGTGCTTGCCAGAATGGTGTCGGCCGGCGAAGGTTGTACATACAAAAGAGGCCAGCT
-AATTATAGAAGTAGAAGTAGC------AGCAAAGCAATAG---------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S----S--------S--S-
-------SSSSSS----------S-----------SS------S--S---------------------------------
----------------------------------SS-----S--------------S-----------------------
----------------S--------------S------------------------------------------------
--------S-----------------------------------------------------------------------
S---SSSS------------------------------------------------------------------------
---S-----------------------------------------------SSSSSSS------------------S---
-------S-----------------------------------------------------------S------------
------------------------------------------------------------SSSS----------------
----S----------S-------S------------------------------------------------------SS
-S-SSSSSS-----------------------------------------------------------------------
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------------------------------------------------------------------------S-------
----S----------------------------------SSS--------------------------------------
-----------------------------------------------------S---------------SSSSS------
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--S------------------------------------------------------------------------S---S
S----------------------------------------SSS-SS-SSS-SSSSS--S--------------------
----------------------------------------S--------S-----------S-S----------------
S--------S---------SS---S---------S--SS-----S-----S------------S--------------S-
-------------S-SSSS--S----S---------S----S-SSS-SS------S--S-SS-------------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S-------------S--S----------SSSS-SSSSS
SSSSSSSSSSSSSSSSSSSSS--S------------------S-------S-----------------------------
--------S--SSS------------------S----SSSSSSSSSS---------S--S--------------------
--------S-S---------S-----S-------------S-S-----------S----------S--S-----------
------SS----SS----SSSSSSSS------------------SSSSS------------SSSSSSSSS-----S--S-
---------S----------S-----SS--S---------SS----S--S----SSSSSSSSSSSSSSSSSSSSSS----
--------SS---S----------SS-S-S---SSS------------------------S--SS----S-S----S---
-----S------------------S----S-SSS---S------SS--S---------------S----S---S--S---
---------SS---------SSSSSSSS
>forward_25
-----GGGATGAAGTGGGGAAAGGG-------------------------------------------------------
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>reverse_2300
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-----------------------------------------------------------TGAGGAGTCCAGAGAGAGGC-
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