>input_sequence_87501
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-------------------------------------------------------------ATGGGGAGTGTGAGGAGCC
AAGGCAAGCAAGGGGGGAGGGTGAGCAGAGCTCTGAAAGAGCATAGAGCCAGGCTCTACATCATCCGTAGGTGCATCGTC
ATGCTCCTTTGCTGGCATGACTGA--------------------------------------------------------
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>chr5D_1_TraesCS5D01G183800
ACAGAGAGGCTCAGAAATCAACATGGGGAGGACCCTAGAAAGTGGCACACAGGGGCAGCAGACAACCCCTGCACAAGAAA
GTGCCCTGTGTTTTGACTGGAAACTAGGCAAGATAGATGGAAATGCAGTAAAGGGCGCAGCATCAAACGGCTACAACGTC
CA---TAAGACAAGCACCTCAACCAAAGCACGCATACACACAGAGGGCTG-------------TTTT--TTTCTAATCAT
ACGGAATAAGTACACTCAAAAGTGCTTTTCAGTCAAAAGATATGCCGGCTGCATGGATAATCCGAGTACTCATTCCATCC
TGCTTCCTAGCAGCTTCCGAACGAATCGAGGCGACACGAGGAAATCTCCAAGATACTTGAATATTAGATCTCCATAAACT
CTTTCCAACTCTTTACCGGCACAATCTACCGACAGGAGGATATACTACAGTACT--GCTACCACATAATACTGTTAACTA
ATCAAGTTCAAGAAGATCTTGGCAATGCAAGAAGATCGCTAGTGTTCTCCCAAGGAAGATCAAACAGACAAATTACAGTG
GTGTAAGATATCCAAGTACCAAGATAGATAAGCAAAGAAAGA-GAGAAGGGAATAAATTATGATACCAGCCGCAAGCAGT
AGTGCCAGATACCAAGAACCTTCATCAGAGCCATGCCGAACCGCTACTGAATCTGCATATTTCAACACGTATGCGGCAGG
ATGAGCTGTCCGTTATCCGAAATGATTGTATCCATCAATAAGATCAAGCTTTTTGTCGGCGACAGGAACAATAACCCACA
TTCAGATGCAGAGATTTGTCCCCTGAGATTAAATAAAAAGAGGAAATGAAGAATTAGCACAGTTGCATGGGAGGAAGGGC
ACTGCATGCTCGCCTCCTCTATAAAACCCCAGCCCCCGGGCTTCCCAGCTCCACACCACAGCAAGCTCCAACCAGGGATC
AGATCTACACAGAGAGCAAACTCTCCTACTTTCATCGCATCTCTTCAGTTCATCAAGCTAAATGGGGAGTGTGAGGAGCC
AAGGCAAGCAAGGGGGGAGGGTGAGCAGAGCTCTGAAAGAGCATAGAGCCAGGCTCTACATCATCCGTAGGTGCATCGTC
ATGCTCCTTTGCTGGCATGACTGAGCTCCAAGCTGCATTTTCGTTCCTCCATGGAACCCATGAAGTCAAGGG-TCCATCC
ATGGAGAAGTCACACTTAGATAGGGAAGTATCATCAGTTAGTTAG------GAGTAGAAGTAGAAGCTAGGAAGGAACTC
CCATG----CTCATGGCATATTGCTCTCAAGAAAGCTTGGTAGACTAGACATTCTATCAGTTGTTTC-TTTACCATGAGT
TATTAGTATTTATTTTTCCATTTTTTCTCCACCTGTTTTCCCATCTGCCATCCCTTAGGCAGTGGGATATATGCGGCTGC
TGTATCTTTTTGGACATGTTGTGTACTGTACCCATGCATGGTCTGATAGAGATGATTCAGTGAAAGAATCAAAGTCGAAC
ATGGACTCTTGTCCTTCTACTATGAAATGAATATATATTCCATCTTCTTTGGTTGTGGAG---------GTCATACAGCT
TGAGCTGTCGATAAACTTTTAATCCTGGTATGCATGTCTCACTATATTCTGGAGCTCGCAATATTTCATAGAAATAACCA
TGTGTCTGTGT-------------------GTGGGGTGGGGATAAAACTTCACCTCGATTTTTAAGAAA-----------
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----------GAACAATGATAAAAAAAAAGCCTCACAACTTTGATACACCAAGAATAAAGCACTAGGGTGCACGTACAGC
GTAGGGAGTGAACAGGAAGTCCACAAATGCACTAAATGTAATAACCATATATATATATACTGCTTATTGGTTGCGAGAAA
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-----------------------------------------------------TTTTGTCCAGGTCAATGATGAGTTGAA
GTGCATAAGGAAATAGCTTCATAG--TGTCTTAAGCAGCAAATAATGGAGCCTATG------------------AGCAGT
CCTTGATTGTCCTTTTGTACTGTACTGTAGTGTACTGCATCGTACGCATCATAGCTAGCTGAATTAACTTTTGCACACGT
AGGCGGCATAGATCAGCTAGTTTAGAGCCTAAGCACCCATCAGACGGTATAATATCATAGGAGTATTATGAATCAATCAT
CCGCAGAAAGGACAAAGTCGCTAGTTAAGCAGCAGCTG
>chr5A_1
ACAGAGAGGCTCAGAAATCAACATGGGGAGAACCCTAGAAAGTGGCACACAGGGGCAGCAGACAACCCCTGCACAAGAAA
GTGCCCTGTG-TTTGACTGGAAACTAGGCAAAATACATTGAAATGCAGTAGAGGACGCAGCATCAAACGGCTACAATGTC
CAATATAAGACAAGCACCTCAACCAAAGTGCGCGCACACACACACACATAGACATAGGGCTGTTTTT--TTTCTAATCAT
ACGGAATAAGTACACTCAGAATTGCTTTTCAGTCAAAAGATATGCCGACTGCACGGATGATCCGAGTACTCATTCCATCC
TGCTTCCTAGCAGCTTCCGAACGAATCGAGGCGACACGAGGAAATCTCCAAGATACTTGAATAC--GATCTCCATAAACT
CTTTCCAACCCTTTACCGGCACAATCTACCGACAAGAGGATGTACTACAGTACTCTGCTACCACGTAGTACTGTTAATTA
ATCAAGCCCGAGAAGATCTTGGCAATGCAAGAAGATCGCTAGTGTTCTCCCAAGGAAGTTCAAACAGACAAATTACAGTG
GTGTGAGATATCCAAGTACCAAGATAGATAAGCAAAAAAAAA-GAGAAGGGAATAAACTACGATACCAGCCGCAAGCAGT
AGTGCCAGATACCAAGAACCTTCATCGGAGCCATACCGAACCGCTACTGAATCTGCAGATTTCAACACGTATGCGGCAGG
ATGAGCTGTCTGTTATCCGAAACGATCATATCCGTCAATAAGATCAAGCTTTTTGTCGGCGACAGGAACAATAACCCACA
TTCAGATGCAGAGATTTGTCCCCTAAGATTAAATAAAAAGAGGAAATGAAGAATTAGCGCGGTTGCATGGGAGGAAGGGC
ACGGCATGCTCGCCTCCTCTATAAAAGCCCAGCCCCCGGCCTTCCCAGTTCCACGCCACAGCAAGCTCCAACCAGGGATC
AGATC-ACACAGAGAGCAAGCTCTCCTGCTTTCATCACATCTCTTCAGTTCATCAAGCAAAATGGGGAGTGTGAGGAGCC
AAGGCAAGCAAGGGGGGAGGGTGAGCAGAGCTCTGAAAGAGAACAGAGCCAGGCTCTACATCATCCGTAGGTGCATCGTC
ATGCTCCTTTGCTGGCATGACTGAGCTTCAAGCTGCATTC----TCCTCCATGGAACCCATCAAGTCAAAGGGTCCATGC
ATGGAGAAGTCACACTTAGATAGGGAAGTATCATCAGTTAGTTAG------GAGTAGAAGTAGAAGCTAGGAAGGAACTC
CCATGCATGCTCATGGCATATTGCTCTCAAGAAAGCTTGGTAGACTAGACATTCTATCAGTTGTTTC-TTTACCATGAGT
TATTAGTATTTATTTTTCCATTTTTTCTCCACCTGTTTTCCCATCTGCCACCCCTTAGGCAGTGGGATAT--GCGGCTGT
TGTATCTTTTTGGACATGTTGTGTACTGTACCCATGCATGGTCTGATAGAGATGATCCAGTGAAAGAATCAAAGCCGAAC
ATGGACTCTTGTCCTTCTACTATGAAATGAATACATAGTATATCTTCTTTCGTTGTGGAG---------GTCATACAACT
TGAGCTGTCGATAAACTTTTAATCCTGATATGCATGTCTCGCTATATTCGGGAGCTCGCAATATTTCATAGAAATAACCA
TGTGTCTGTGT-------------------GTGGGGTGGGGATAAAACTTCACCTCGATTTTTAAGAAAGAACGATAAGG
ACAGACCCAGTGCATAGAAGCTCCCACACAAGGTGGGGTCTGGGGAGGGATTACAGGAACCTAGTCTTACCCTTGCAAAG
TGCAATGCAGAGAGGCTGGTTCGAACCCAGGACCTCTTGGCACAAGTGGGGAGGACTTCACCACTGCGCCAGGCCTGCCC
TCTTAAGAAAGAACGATGATAGAAAAAAAGCCTCACAACTTTGATACACCAAGAATAAAGCACTAGGGTGCACGTACAGC
-TAGGGAATGAACGGGAAGTCCACAAATGCACTAAATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTGTCCAGATCAATGATGAGTTGAA
GTGCATAAGAAAATAGCTTCATAG--TGTCTTAAGCAGCAAATAATGGAGTCTATG------------------AGCAGT
CCTTGATTGTCCTTTTGTACTGTACTGTAGTGTGCTGCATCGTACGCATCATAGCTAGCTGAATTAACTTTTGCACACGT
AGGCGGCATAGATCAGCTAGTTTAGAGCCTAAGCACCCATCAGACGGTATAATATCGTAGGAGTATTATGAATCAATCAT
CGGCAGAAAGGACAAAGTCGCTAGTTAAGCAGCAGCTG
>chr5B_5
----AGAGGCTCAGAAATCAACATGGGGAGAACCCTAGAAAGTGGCACACAGGAGCAGCAGACACCCCCTGCACAAAAAA
GTGCCCTGTGTTTTGACCAGAAACTAGGCAAGATACATGGAAATGCAGTAAAGGGCGCAGCATCAAACGGCTACAATGTC
CA---CAAGACAAGCACCTCAACCAAAGCACGCACACAG----------------AGGGCTTTTTTTCATTTCTAATCAT
ACGGAATAAGTACACTCAAAAGTGCTTTCCAGTCAAAAGATACCCCGGCTGCACGGATGATCCGAGTACTCATTCCATCC
T---TCCTAGCAGCTTCCGAACAAATCGAGGCGACACAAGGAAATCTCCAAGATACTTGAATATTAGATCTCCATAAACT
CTTTCCAACTCTTTAGCGGCACAATCTACCGACAAGAGGATATACTACAGTACT--GCTACCACATAATACTGTTAATTA
ATCAAGTCCAAGAAGATCTTGGCAATGCAAGAGGATCGCTAGTGTTCTCCCAAGGAAGATCAAACAGACAAATTACAGTG
GTGTAAGATATCCAAGTACCAAGATAGACAAGCAAAAAAAAAAGAGAAGGGAATAAATTATGATACCAGCCGCAAGCAGT
AGTGCCAGATACCAAGAACCTTCATCGGAGCCATGCCGAACCGCTACTGAATCTGCAGATTTCAACACGTATGCGGCAGG
ATGAGCTGTCTGTTATCCGAAACGATCGTATCCGTCAATAAGATCAAGCTTTTTGTCGGCGACAGGAACAATAACCCACA
TTCAGATGCAGAGATTTGTCCCCTGAGATTAAATAAAAAGAGGAAATGGAGAATTAGCGCGGTTGCATGGGAGGAGGGGC
ACTGCATGCTTGCCTCCTCTATAAAAGCCCAGCCCCCGGCCTTCCCAGTTCCATACCACAGCAAGCTCCAGCCAGGGATC
TGATC-ACACAGAGAGCGAACTCTCCTGCTTGCATCTCATCTCTTCAGTTCATCAAGCAAAATGGGGAGTGTGAGGAGCC
AAGGCAAGCAAGGGGGGAGGGTGAGCAGAGCTCTGAAGGAGCACAGAGCCAGGCTCTACATCATCCGTAGGTGCATCGTC
ATGCTCCTTTGCTGGCATGACTGAGATCCAAGCTGCATTC----TCCTCCATAGAACCCATCAAGTCAAGGG-TCGATGC
ATGGAGAAGTCACACTTAGATAGGGAAGTATCATCAGTTAGTTAGGACTTAGAGTAGAAGTAGAAGTTAGGAAGGAACTC
CCATGC----TCATGGCATATTGCTCTCAAGAAAGCTTGGTAGACTAGACATTCTATCAGTCGTTTATTTCACCATGAGT
TATTCGTATTTATTTT-CCATTTTTTCTCCACCTTTTCTCCGATGTGCCGTCCCTTAGGCAGTGGGATAT--GTGGCTGT
TGTATCTTTTTGGACATGATGTGTATTGTACCCATGTCTGGTCTGATAGAGATGATTCAGTGAAAGAATCAAAGTCGAAC
ATGAACCCTTGTCCTCCTAATATGAAATGAATATATATTTTATCTTCTTCGGTAGTGGAGGCAATATGAGTTATACGACT
CGAGCTGTCGATAAACTTTTAATCCTAATATGCATGCCTCGCTATATTCTGGAGCTCGCATTCTTT-ATAGAAATAACCA
TGTGTGTGTGGGCCCACGCACGCGAGGGGCGTGAGGTGGGGATAGAACATTACCTCAATTTTAAAAAAGATGC-------
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------------------ATGAAAAAAAAGCCACACAACTTCTATACACCAAGAATAAATCACTAGGGTGCAC----AGT
GTAGGGAATGAACAGGAAGTCCACAAATGCACCAACTGTAATAACCATGTATATATATATA-CTTATTGGTTGTCAGAAA
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-----------------------------------------------------TTTTGTCCAGGCCAATGATGAGTTGAA
GTGCATAAGAAAACAGCTTCATATAATGTCTTAAGCAGCAAACAACGGAGCCTACCAGGGCCTACTATTATATAAGCAGT
CCTTTATTGTCCTTTTGTACTGTG-----GTGTACTGCATCCTACGCATCATAGCTC----AATTAACGTTTGTACACGT
ACGCATCATAG---------------------------------------------------------------------
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>SNPs
------------------------------S-------------------------------------------------
-----------------------------------S----------------------------------------S---
----------------------------------S-------S-SSSS-S------------------------------
-----------------------------------------------------S----S---------------------
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----------------------------------S------------------------------------------S--
-------S------------------------------------------------------------------------
------------------------------------S---S---------------------------------------
--------------------------S------------------------------S----------------------
----------S-----------S---S------S----------------------------------------------
----------------------------------------------------------S-S-------------------
--------------------------S------------S--------S-------------------------------
-----S---------------------S--------S---------------------S---------------------
-------------------------------------------S------------------------------------
---------------------------------------SSSSS-----------------S----------------S-
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----------------------------------------------------------------------SS-------S
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---------------------------------------SS------------------------------------S--
---------------------------S------------S---------------------------------------
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--------------S-----------------------------------------------------------------
-------S----------------------------------------S----------SSS-----------SS-----
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---------S----------------------------------------------------------------------
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--------------------------------------------------------S-----------------------
-S------------------------------------
>forward_206
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--------------------------AGCACGCATACACACAGAGG----------------------------------
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>reverse_2722
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-CGCAGAAAGGACAAAGTCGC-----------------
