>input_sequence_87490
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------------------------------------------------------------ATGGGAAAAGTGGTCTTCGG
GGCATATCACCTTCAATGCAAGCTATTTGTTTCAGAAGAAACTTTTGATTGGCGTGTTTTAGCTCGTGGGAACACCCAAC
TCTTCTCTCTGGTGAACTGCACATAG------------------------------------------------------
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>chr6B_1_TraesCS6B01G296600
GTTTTCAGGATTATACTGGGGTGCTTTTTTGTTTGGATTTTTCGTCCTTCCTTTTGTTGTCTGATTTAGATTTTTCTGTT
TGCGCGGAAAGGTTCC-TTTTTTCTCGTTAAAAGGCGCCTTTTTTCTTCCTATAGATGAGAAAAATCTATGTGTTTTTGT
GCCTGCAATGTAAATTGTGATTGAGGTGGCAATACAGAAGTTTGAGAGAGAAGCTCAGAAAAATAAGGTAGCAATGCAGG
CGTCTTCCCATTGGTTCCAACCCGAGGCGATATTTTGAATTCGGAGATGTTTCTATATGTATGGATTTTGCTACGATAAA
ACCGTTTGAGCCAGTAATGAGATAGCAACATTGTTTTCCAACTTCCATGTTTCAAGCAGTGGTATAGCTTGATCACCATG
CCAATTGAGATGCCGGCTCGTTATTGCGATTGATGAATAGCATCATTGATATCGATATG---GTTTGCAATGTCCAGCTC
CACCAATATTATAGACTTCTACCCTGATATTAATGTATGCCTAGTATTATGTGATTTAGGTAAAAGAGTGCTATACCTGA
TTCTGATATTTCCCTGAGAACTATGTTTCATTTTGTGCGTTAGTGTTGGTTCTAGCAACACGTGGGCCGTAAATTACTAC
CCACTTAAAATGATTCAATTCAAATTTTTGCTGTGTACATACCCCCATATATCTTAGTATATTAA------------AAT
GGATGCTTTAAACTAGATTTGGAAATGTTGCTAAGTTTGTGTTGTTTTCTGATAGAGATCGTCAGTCGACTGCGTTATAT
ATAATCCAAATGGTTCTATGCCGTATTGATGTTCATGCTTCATGTAAATGATTCTTGTTCCTTTTTTTTGAGGGTGATTC
TTATTCCTTTGGCATACACTATACCATGTCATCGAGCGCAAAAAGTGTTATAATCGACCACATCATTCTGATTCAAATAC
ATT----GTATCAGATTGCACCAGCAGTGATCTTCGGAGTTTAAAGTGTTCATCAAAGACATGGGAAAAGTGGTCTTCGG
GGCATATCACCTTCAATGCAAGCTATTTGTTTCAGAAGAAACTTTTGATTGGCGTGTTTTAGCTCGTGGGAACACCCAAC
TCTTCTCTCTGGTGAACTGCACATAGTAGTTCTATGCTCAACGACAGCAGGCTGAGGCGATCCTGAAGCGATACTCCAGT
CTATGCTCCACATCTACATGTAAAATACCTGCTTTGTTTTTCCTTTCTTTTGTTCTATTGGCTAAGCTTTTATCATCTCA
TTTTG--CATTCTCTATTTATCAGCGCATCATCTCCAGACTAACTTCTTATTGTAGTCAAATCCAGTAGTAGATGCTGAT
CATGTAAACTGGCCAATGATGTGCTCGTAGAATAATTAAATTCTACTATTGGGAGTTCAAACTGTTCTTTCCTGCATGTA
TTGGCATGTGAAAAACTAAATCAACCATATCTCTTGAAACATTCTGAATTTCTTTTCTCTTTGCTAATATATGCAGGGTC
AACCATCTTTACTGCATTCAGTCTCCATCTGTCACTCCCTAGTTAGTTGCCATTTGCTTTGCTGTATACCATCTGAGGTC
AAGGCTCATCCTTGCTATATTCTGGGACTCTACTATGATTGCTGTGGGATCTTTGTGAGGGGACCAAATCCAAGACAGCA
CAAGCTAGTGGAGGCCCACTGTTCAATTGACGGATCATACATCTGTTCGTGCGAACTGATAGACAAGATATTGGTCGCTT
AGACTTTGAAACACTTCTCTGTGCTTGTTGTTGATTTTTCTTGATACCTGGTT---------------------------
-------GTCCCAAAGGAAAAGGCTTCTTGATACCTGGTTGTCCCAAAGGAAAAAGCTTCTATCACGCAACAAAATTACC
GGAACAATGGATAGGTAACCCTTTTTGTAATTTT-TTCTCCTCTGGATAACAGTTGTATTGAATTCCTGTTTTGGGTTTG
CATTTTTCTTAGAGCGCCTTATTTTTGTAGATTCAAGTTGATTAAGGAAGTTGGTGATGGGACATTCGGGAGCGTATGGC
GCGCTATAAATAAACAAAATGGTGAAGTTGTACGTATCCTATGAT----CACTCTTGCTATCTTTGCCTGAACTGTGAAA
CAATGAAGTTGACG-CAATGTTTCATAT
>chr6D_1
GTTTTCAGGATTATGCTGAGATGCTTTCCTGTTTGGATTTTCCAT-CTTCCTTTTGTTGGCTGATTTACATTTTT-----
-ACGCGGAAAGGTTAC-TTTTTCC-CGTTAAAAGGCGCCCTTTTTCTTCCTATAGATGAGAAAAATCTATGTGTTTTCGT
GCTTGCAATGTAAATTGTGATTGAGGTGGCAATACAGAAGTTTGAGAGAGAAGCCCAGAAAAATAAGGCAGCAACGCAGG
CGTCTTCCCATTGGTTCCAACCGGAGGCGGTATTTTGAGTTCGGAGATGTTTCTATATGTATGGATTTTGCTACGATAAA
ACCGTTTGAGCCTGTAATTGGATAGCAACATTATTTACAAACTTCGATGTTTCAAGCAGCGGTATAGCTTGATCACCATG
CCAATTGAGATGCCGGGTCGTTACTGCGATTGGTGAATAGCATCAATGATGTCAATATG---GTTTGCAATGTCCAGCTC
CACCAATGTTATACACTTCTACCCTGGTATTAATGTATGCCTAGTATTATGTGATTTAGGTAAACGAGTGCTATATCTGA
TTCTGATATTTCCCTGAGAACTATGTTTCATTTTGTGCATTAATGTTGGCTCTAGCAACACGTGGGCCGTAAATTATTAC
CCACTTAAAATGATTCAATTCAAATTTTTTCTGTGTACAGACCTCCATATATCTTAGTATATTAA------------AAT
GGATGCTTTAAACTAGATTTGGGAATGTTGCTAAATTTGTGTTGTTTTCTGATAGAGGTCGTCAGTCGACTGCGTTATAT
ATAATCCAAATGGTTCTATGTCGCACCGATGTTCATGCTTCATGGAAATGATTCTTGTTC--------------------
------CTTTGGCATACACTATACCATGTCATGGAGCGCAAAAAGTTTTATAATCGACCACATCATTCTGATTCAAATAC
ATTCATTGTATCAGATTGCACAAGCAGTGATCTTAGGAGCTTAAAGTGTTCGTCAAAGACATGGGAAAAGTGGTCTTCGG
GGCATATCACCTTCAATGCAAGCTATTTGTTTCAGAAGAAACTTTTGATTGGCGTGTTTTAGCTCGTGGGAACACCCAAC
TCTTCTCTCTGGTGAACTGCACATAGTGGTTCTATGCTCAACGACAGCAGGCTGAGGCGATCCTGAAGCGATACTCCAGT
CTATGCTCCACATCTACATGTAAAATACCTGCTTTGTTTTTCCTTTCTTTTG--------------------------CA
TTTTG--TATTCTCTATTTATCAGCGCATCATCTTCAGAGTAACTTCTTATCGTAGTCAAATCCAGTAGTTGATGCTGAT
CATGTAAACTGGCTAATGATGTGC--------------------------------------------------------
------------------------CCATATCTCTTGAAACATTCTGAATTTCTTTTCTCTTTGCTAATATATGCAGGGTC
AACCATCTTTACTGCATTCAGTCTCCATCTGTCACTCCCTAGTTAGTTGCCATTTGCTTTACTGTGTACCATCTGAGGTC
AAGGCTCATCCTTGCTATATTCTGGGACTCTACTATGGTTGCTGTGGGATCTTCGTGAGGGGACCAAAGCCAAGACAGCA
CAAACTAGTGGAGGCCCACTGTTCAATTCACGGATCATAAATCTGTTCGTGCGGACTGATAGACAATATATTGGTCGCTT
AGACTTTGAAACACTTCTCTGTGCTTGTTGTTGATTTTTCTTGATACCTGGTTA--------------------------
--------TCCCAAAGGAAAAGGCTTCTTCATACCTGGTTGTCCCAAAGGAAAAAGCTTCTATCAGGCAACAAAATTACT
GGAAAAATGGATAGGTAACCCTTTTTGTATTTTT-CTCTCCTCTGGATATCAGTTGTATTGAATTCCTGTTTCGGGCTTG
CATTTTTCTTAGAGCGCCTTATCTTTGCAGATTCAAGTTGATTAAGGAAGTTGGTGATGGGACATTCGGGAGCGTATGGC
GCGCTATAAATAAACAAAATGGTGAAGTTGTACGTATCCTATGATATATCACTCTTGCTATCTTTACGTGAACTGTGAAA
CAACAAAGTTGACGTCAATGTTTCATAT
>chr6A_2
-TTTTCAGGATTGTGCCGGGATGCTTTTCTGTTTGGATTTTTCAT-CTTCCTTTGGTTGGCTGATTTAGATTTTT-----
-GCGCGGAAAGGTTCCTTTTCTCC-CGTTAAAAGGCGCCTTTTTTCTTCCTATAGATGAGAAAAATCTATGT-TTTCTGT
GCTTGCAATGTAAATTGTGATTGAGGTGGCAATGCAGAAGTTTGAGAGAGAAGCTCAGAAAAACAAGGTAGCAATGCAGG
CGTTTTCCCACTAATTCCAACCTGAGGCGATATTTTGAGTTCGGAGATGTTTCTATATGTATGGATTTTGCTACGATAAA
TCCGTTTCAGCCAGTAATGGGATAGCAACATTATTTTCGAATTTTGATGTTTCAAGCAACGGTATAGCTCGATCACCACG
CCAATTGAGATGCCGGGTCGTTATTGCGATTGATGAATAGCATCATTGATAGTACCGATACTGTTTGCAATGTCCAGCTC
CACCAATGTTATACACTTCTACCCTGGTATTAATGTATGCCTAGTATTATGTGATTTAGGTAAACGAGTGCTATATCTGA
TTCTGATATTTCCCTGAGAAATATGTTTCGTTTTGTGCATTAATGTTGGTTCTAGCAACACGTGAGCCGCAAATTATTAT
CCACTTAAAATGATTCAATTCAAAATTTTGCTGTGTACAGACCTCCATGTATCTTAGTATATTAAAAGGGATATTAAAAT
GGATTCTTTAAACTAGATTCGGAAATGTTGCTAAATTTGTGTTGGTTTCTGATAGAGATCGTCAGTTGACTGCGTTATAT
ATAATCCAAATGGTTCTACGTCGCATCAATGTTCATGCTTCGTGGAAATGATTCTTGTTC--------------------
------CTTTGGCATACACTATACCATGTCATCGAGCGCAAAAAGTTTTATAATCGACCACATCATTCTGATTCAAATAA
ATT----GTGTCAGATTGCACCAGCAGTGATCTTGGGAGCTTAAAGTGTTCATCAAAGACATGGGAAAAGTGGTCTTCGG
GGCATATCACCTTCAATGCAAGCTATTTGTTTCAGAAGAAACTTTTGATTGGCGTGTTTTAGCTCGTGGGAACACCCAAC
TCTTCTCTCTGGTGAACTGCACATAGTGGTTCTATGCTCAACGACAGCAGGCTGAGGCGATCCTGAAGCGATACTCCAGT
CTATGCTCCACATCTACATGTAAAATACCTGCTTTGTTTTTCCTTTCTTTTGTTCTATTGGCTAAGTTTTTATCATCTCA
TTTTGTTTATTCTCTGTTTATCAGCGCATCATCTCCAGAGTAACTTCTTATTGTAGTCAAATCCAGTAGTAGATGCTGAT
CATGTAAACTGGCCAATGATGTGCTCGTAGAATAATTAAATTCTACTATTGGGAGTTCAAACTGTTCTTTCCTGCATGTA
TTAGCATGTGAAAA-CTAAATCAACCATATCTCTTGAAACATTCTGAATTTCTTTTCTCTT----AATATATGCAGGGTC
AACCATCTTTACTGCATTCAGTCTCCATCTGTCACTCCCTAGTTAGTTGCCATTTGCTT-GCTGTATATCATCTGAGGTC
AAGGCTCATCCTTGCTATATTCTGGGACTCTACTATGGTTGCTGTGGGATCTTCGTGAGGGGACCAAATCCAAGACAGCA
CAAACCAGTGGAGGCCCACTGTTCAATTGACGGATCATACATCTGTTTGTGCGAACTGATAGACAAGATATTGGTCGCTT
AGACTTTGAAACACTTCTCTGTGCTTGTTGTTGATTTTTCTTGATACCTGGTTGTCCCAAAGGAAAAAGGCTTCTTGATA
CCTGGTTGTCCCAAAGGAAAAGGCTTCTTGATACCTGGTTGT-CCAAAGGAAAAAGCTTCTATCAGGCAACAAAATTACC
GGAAAAATGGATAGGTAACCCTTTTTGTATTTTTTCTCTCCTCTGGATAACAGTTGTATTGAATTCCTGTTTCGGGTTTG
CATTTTTCTTAGAGCGCCTTATCTTTGCAGATTCAAGTTGATTAAGGAAGTTGGTGATGGGACATTCGGGAGCGTATGGC
GCGCTATAAATAAACAAAATGGTGAAGTTGTACGTATCCTATGATATATCACTCTTGCTATCTTTACCTGAACTGTGAAA
CAATGAAGTTGACGTCAATGTTTCATAT
>SNPs
--------------S-----S-------S--------------S-S-------------S---------------SSSSS
S---------------------S-S-------------------------------------------------------
--S-----------------------------------------------------------------------------
----------------------S---------------S-----------------------------------------
-------------------S------------S-----S------S-------------S--------------------
----------------S------------------------------------S--------------------------
-------S-----S------------S-------------------------------------S----------S----
--------------------------------------S---S---------------------------------S---
---------------------------------------S---S------------------------------------
----------------------------------S---------------------------------------------
--------------------S--S--S-----------------S---------------SSSSSSSSSSSSSSSSSSSS
SSSSSS----------------------------------------S---------------------------------
----------------------------------S----S----------------------------------------
--------------------------------------------------------------------------------
---------------------------S----------------------------------------------------
------------------------------------------------------------------S-------------
-------S-------------------------------S----------------------------------------
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--S-----------S-----------------------------------------------------------------
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-------------------------------------S---------------S--------------------------
---S----------------------------------------------------------------------------
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-----------------------------------------------------------------S--------------
----S------------------------S-----S------------------------------------S-------
----------------------S----S----------------------------------------------------
-----------------------------------------------------------------S--------------
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>forward_1000
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--------------------CCAGCAGTGATCTTCGGAGT----------------------------------------
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>reverse_1906
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-----------------------------------------------------------------CGCAACAAAATTACC
GGAACA--------------------------------------------------------------------------
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