>input_sequence_87489
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------ATGTCGCCGGTGATCAGCGAGATCCTCCTCTCGGGGTTTATGATCAACTCC
ACACTCCGGCGCCGAACCCACCTCGTCCAGTCCTTCTCCGTCGTCTTCCTCTACTGGTTCTATGTCTTCTCATAA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
>chr6B_1_TraesCS6B01G124800
TCGTTGCTAGACTACCGCCCGCCCGTGATTCAAATCGTAGCC---CACCGGCAAGACCCGCGTGCCAGTCACCTTGAATA
CTA---CCATCTACTACATTCTGCGCTTGCAATTGATGCTGCGAAAGACGTGCGCCTTGGAGCCCAGACAGAGGCGGCGG
ATCAATGGCGGCCGGCCGCAGTAGAGGCAGATTCTCTCCGCTTTTGAACCACCGCGCGCCGGGCCGGGGTAGCATGCATG
ATTTTTCACTTTTCACCGCGCGCCGGCTTTCGGCGCATCTTCCCGTGGGCCGTGGCAGAGAGAGAGAGACGCCGGCGCGG
GCCGGCTGGCAAGTTGGAGAGTCTGGACACGACGGCCTC--CTCTAGACGCCTCCACCAGTCACCACACGGGGCCTACCG
CCTACC--AGCTACAGCAGTGGCGCCGGGCCAAGTGAAGTGAACGCGCCTGCACCTGCGTAGTACGGCGGGCATGGGCGC
GCGAGTGAGGCCAAGTGAGGTCAGCGTGATTTCCAGCCGAGCTGCCTCAGCCTCGGATCCACTCCGACCGCCCGCACGTG
CGACCGCCCCGCCC-------------------------------TCATTCCTGCCCGCTCTGCGCCGCTGCTCTGCTGC
ACCGCTGCCGCTGCAATCGATCGGGGGTCGATTCCCATTCCCACCCTCCCCCCAGCGGAATCGCATTCCCGTTCGTCCTC
CCCCGAGCCACCGGCCGGCTCTATAAATCCCTCCCCGCTCCCTGCCCCAACACCCCCCTCCTCCTCCTCC--CTCTCTTC
TTCCTCCTG-----------CCCTCCTCTGCACCGCAGCGAGAGAGAGAGACAGACAGAGTCCGTCTAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGGAAGGGAAGCAGGCAGTGAGCTG-----------AGAGGTCGGCC
GTCCACCCGTCCATTTCCCGGCCGGTGGAGCTCC---CTCTTCT-TCCCGGAGGCAACCCAAGAAAGCGGAGCGCACATG
CTTCCCCGGGTCCGCCTCAGAGTCCCCCGATGTCGCCGGTGATCAGCGAGATCCTCCTCTCGGGGTTTATGATCAACTCC
ACACTCCGGCGCCGAACCCACCTCGTCCAGTCCTTCTCCGTCGTCTTCCTCTACTGGTTCTATGTCTTCTCATAAACTAC
TCGCCCCCGCCGTCGCCCTCCCCCTCCTCTCCCTCCTCCTCCTCCTCCTTTAGCCCTCCTGCTCATCCCTTCAAGCTCCC
CTCGTCCCACACACTCGCTTACTCTCTCTCTCTCGTCGTCGTCGCAGTCTC----TCTAGAGTCAGTCCGTAGCTGGTTA
CGATCC--ATCTTTGGTTCTTGCAACAACAACAAAGGAAAGCAGAGAGTGCTTGTCTGCTCGCTTGCTTG-GTGGTGATG
GCGTCCTCC------AGCGGGAGCGGGAGCACGGGCTCGCTGTCGACGGCGGGGGCGGCCATGGCGATGGCGGCCGCGTC
GGGCACGGAGGAGGAGATGCGGGCGCTCATGGAGCAGCGCCGGGCCAAGCGGATGCTCTCCAACCGGGAGTCGGCGCGCC
GCTCGCGGATGCGCAAGCAGCGCCACCTCGACGACCTCGCCGCGCAGGCGGCGCACCTCCGCCGCGAGAACGCGCACGTC
GCCGCCGCGCTCGGGCTCACCGCGCGGGGCCTCCAGGCCGTCGACGCCGAGAACGCCGTCCTCCGCACCCAGGCCGCCGA
GCTCGCCGCGCGCCTCCACTCGCTCAACGACATCATCGCCTGCATGAGCGCCAACAACAACACCGCCGCCGCCGTCACGC
TCACCGTCGCCGCAGCCGCCACCGCCACCACCGCCGACCCGCTCCTCGGCGGCTTCGACGGCGCGTCATTCGAGGACTTC
CTCTTCAGATCCTCCCCCGAGATGTTCATGTTCCCAGCCCTGCAAAGCTAGCACCCACGCCACGGCCATGGCAGCAGCAC
AAGCACGAGCGCGCAACAAAAGAGATGATCCATCTTTTTTCCTGATGCTTCTGGTGTTTCAGGTTAATTACTACAGTACA
AAAAACTGGGAGAGCCGTGGAGTTTTTACCGCACCTAACTAAGCTAGCTGCTGGGGTTAATTAGTTTATAATTATCATGT
GTAATCTGAACTGGTGTGTGTACCAAGTGATGATGGTTCTTAAGCTTA
>chr6D_2
-CGTTGCTAGACTAGCA-CCGCCCGTGATTCAAATCGTAGCC---CGCCGGCAAGACCCGCGCACCAGTCATCTTGAATA
CTAGTACCAT---CTACATTCTGCGCTTGCAATTGATGCTGCGAAAGACGTGCGCCTCGGAGCCCAGACAGAGGCGGCGG
ATCAATGGCGGGCGGCCGCAGTAGAGCCAGATTCTCTCCGCTTTTGAACTACCGCCGGGCCGGCT-GGGTAGCATGA---
--TTTTCACTTTTCACCGCCCGCCTGCTTTCGGCGCATCTTC-------TCGTGGCAGAGAGGCGCCGGCGCCGGCGCGG
GCCGGTAAGTTCGAGAG---GTTTCGCCACGGAGGCCTCCTCTCTAGACGCATCCGCCGGTCACCCCACGGGGCCTACCG
GCTACCCGAGCTACAGCAGTGGCGCCGAGCCAAGTGAAGTGAACGCGCCTGCACATACGTACGGC----GGCATGGGCGC
----GTGAGGCCAAGTGAGGTCAGCGTGATTTCCAGCTGAGCTGCTTCAGCCTCGGATCCACTCCGACCGCCCGCACGTG
CGACCGCCCTGCCCGCCTGCGCTCCCCGCGCTCTCACTCAGCCATTCCTGCATGCCCGCTCTGCTGTGCT------CTGC
ACCGCTGCACTCAGATCG-----------GATTCCCATTCCCACCCTCCACCCA-CGGAATTGCATTCCCGTTCGTCCTC
CCCTGAGCCACCGGCCGGCTCTATAAATCCCTCCCCGCTCCCTGCCCCAACACCCCCCTCCTCCTCCTCCTCCACTCTTC
TTCCTCCTCCTCCACTCCATCCCTCCCCTGCACCGCAGCGAG-------------CAGAGTCCGTCTAGAGAGAGAGAGA
GAGAGAGAGAA------------------AGTGAGGAGGAGAAGCAAGCAGTACGAGAGCTAGGAAGAAAGAGGTCGGTC
TCACTCATCCATTGCCGCCTAGCTTGGTTGGTTGCTTCTCTTCC-CCCCGGAGGCAACCCAAGAAAGCGGAGCGCACATG
CTTCCCCGGGTCCGCCTCAGAGTCCCCCGATGTCGCCGGTGATCAGCGAGATCCTACTCTCCGGGTTTATGATCAACTCC
ACACTCCGGCGCCGAACCCACCTCGTCCAGTCCTTCTCCGTCGTCTTCCTCTACTGGTTCTATGTCTTCTCATAAATTAC
TCGCCCCCGCCGCCGCCCTCCCCCTCCTCTCCCTCCT---CCTCCTCCTTTAGCCCCCCTGCTCATCCCTTCAAGCTCCC
CTCGTCCCACACACTCGCTTACTCTCTCG---TCGTCGTCGTCGTCGCCTC----TCTAGAGTCAGTCCGTAGCTGGTAA
TCAAGTCGATCTTTGGTTCTTGCAACAACAACAAAGGAAAGCAGAGAGTGCTTGCCTGCTCGCTTGGTGGTGAGGTGATG
GCGTCCTCCAGCGGGAGCGGGAGCGGGAGCACGGGCTCGCTGTCGACGGCGG---CGGCCATGGCGATGGCGGCCGCGTC
GGGCACGGAGGAGGAGATGCGGGCGCTCATGGAGCAGCGCCGGGCCAAGCGGATGCTCTCCAACCGGGAGTCGGCGCGCC
GCTCGCGGATGCGCAAGCAGCGCCACCTCGACGACCTCGCCGCGCAGGCGGCGCACCTGCGCCGCGAGAACGCGCACGTC
GCCGCCGCGCTCGGGCTCACCGCGCGGGGCCTCCAGGCCGTCGACGCCGAGAACGCCGTCCTCCGCACCCAGGCCGCCGA
GCTCGCCGCGCGCCTCCACTCGCTCAACGACATCATCGCCTGCATGAGCGCCAGCAACAACACCGCCGCCGCCGTCGCGC
TCACCGTCGCCGCAGCAGCCACCGCCACCACCGCCGACCCGCTC------GGCTTCGACGGCGCGTCATTCGAGGACTTC
CTCTTCAGATCCTCCCCCGAGATGTTCATGTTCCCAGCCCTGCAAAGCTAGCACCCACGCCACGGCCATGGCAGCAGCAC
AAGAGCGA--GCGCAACAAAAGAGATCATCCATCTTTTTTCCTGATGCTTCTGGTGTTTCAGGTTAATTACTAGTACTAC
AAAAACT-GGAGAGCCGTGGAGTTTTTACCGCACCTAACTAAGCTAGCTGCTGGGGTTAATTAGTTTATAATTATCATGT
GTAATCTGAACTGGTGTGTTTACCAAGTGATGATGGTTCTTAAGCTTA
>chr6A_2
-CGTTGCTAGACTAGCA-CCGCCCGTGATTCAAATCGTAGCCCGCCGCCGGCAAGACCCGCGTGCCAGTCATCTTGAATA
CTA---CCAT---CTACATTCTGCGCTTGCAATTGATGCCGCGAAAGACGTGCGTCTTGGAGCCCAGACAGAGGCGGCGG
ATCAATGGCGGGCGGCCGCAGTAGACTCAGATTCTCTCCGCTTTCAAACCACCGCGCGCCGGGCCAGGGTAGCATAA---
--TTTTCACTTTTCACCGCCGGCCGGCTTTCGGCGCATCTTC-------CCGTGGCAGAGAGA----GGCGCCGGCGC--
--CGGTAAGTTCGAGAG---GTTTCGACACGGAGGCCTCCTCTCTAGACGCGTCCGCCAGTCAGCACACGGGGCCTACCG
CCTACC--AGCTACAGCAGTGGCGCCGAGCCAAGTGAAGTGAACGCACCTG-----------GGC----GGCATGGGCGC
----GTGAGGCCAAGTGAGGTCAGCGTGATTTCCAGCTGAGCTGATTCAGCCTCGGATCCACTCCGACCGGCCGCACGTG
CGACCGCGCTCCCCGCGCTCGT---------------TCAGCCATTCCTGCATGCCCGCTCTGCTGTGCTGCCCATC---
-------------GATCG-----------GATTCCCATTCCCACCCTCCCCCCAGCGGAATCACATTCCCGTTCGTCCAC
ACCCGAGCCACCGGCCGGCTCTATAAATCCCTCCCCGCTCCCTGCCCCAACACCCCCCTCCTCCTCCTCC--CACTCTTC
TTCCTCCTCCTCCACTCCAG--CTCCCCTGCACCGCAGCGAGAGAGA--------CAGAGTCAGTCTAGAGAGGGAAGAG
AAGCAGG--------------------------------------------------G-----------AGAGGTCGGTG
----TCATCCATTGCCGCCTAGCTTGGTTGGTTGCTTCTCTTCCTTCCCGGAGGCAACCCAAGAAAGCGGAGCGCACATG
CTTCCCCGGGTCCGCCTCAGAGTCCCCCGATGTCGCCGGTGATCAGCGAGATCCTACTCTCCGGGTTTATGATCAACTCC
ACACTCCGGCGCCGAACCCACCTCGTCCAGTCCTTCTCCGTCGTCTTCCTCTACTGGTTCTATGTCTTCTCATAAACTAC
TCGCCCCCATA---GCCCTCCCCCTCCTCTCCCTCCT---CCTCCT---TTAGCCCTCCTGCTCATCCCTTCAAGCTCCC
CTCGTCCCACACACTCGCTTACTCTCTCG---TCGTCGTCGTCGCCTCTCTAGAGTCTAGAGTCAGTCCGTAGCTGGTAA
TCAAGTCGATCTTTGGTTCTTGCAACAACAACAAAGGAAAGCAGGGAG----TGCCTGCCTGCTTGCTTG-GCGGCGATG
GCGTCCTCC------AGCGGGAGCGGGAGCACGGGCTCGCTGTCGACGGCGG---CGGCCATGGCGATGGCGGCCGCGTC
GGGCACGGAGGAGGAGATGCGGGCGCTCATGGAGCAGCGCCGGGCCAAGCGGATGCTCTCCAACCGGGAGTCGGCGCGCC
GCTCGCGGATGCGCAAGCAGCGCCACCTCGACGACCTCGCCGCGCAGGCGGCGCACCTGCGCCGCGAGAACGCGCACGTC
GCCGCCGCGCTCGGCCTCACCGCGCGGGGCCTCCAGGCCGTCGACGCCGAGAACGCCGTCCTCCGCACCCAGGCCGCCGA
GCTCGCCGCGCGCCTCCACTCGCTCAACGACATCATCGCCTGCATGAGCGCCAGCAACAACACCGCCGCCGCCGTCGCGC
TCACCGTCGCCGCAGCAGCCACCGCCACCACCACCGACCCATTCCTCGGCGGCTTCGACGGCGCGTCGCTCGACGACTAC
CTCTTCAGATCCTCCCCCGAGATGTTCATGTTCCCAGCCCTGCAAAGCTAGCACCCACGCCACGGCCGTGGCAGCAGCAC
AAGAGCGA--GCGCAGCAAAAGAGATCATCT---TTTTTACCTGATGCTTCTGGTGTTTCAGGTTAATTAAC--TACTAC
AAACTC--GGAGAGCAGTGGAGTTTTTACCGCACCCAACTAAGCTAGCTGCTGGGGTTAATTAGTTTATAATTATCATGT
GTAATCTGAACTGGTGTGTGTACCAAGTGATGATGGTTCTTAAGCTTA
>SNPs
S-------------S-SS----------------------------S------------------------S--------
----------SSS-------------------------------------------------------------------
-----------S--------------S--------------------------------------S----------SSSS
SS-----------------S----------------------SSSSSSS--------------SSSS-S-----------
-----SSS-SSS-SSS-SSS--S-S------SS------------------S---S------------------------
---------------------------S--------------------------S-S----SSS-SSSS-----------
SSSS---------------------------------S-------S----------------------------------
---------S-------------------------------------S-S-S------------SSS-----S-SS----
--------SSSSSS-SSSSSSSSSSSSSS---------------------------------------------------
-------------------------------------------------------------------------S------
--------S-----------------S--------------------SSSSSSSS-------------------------
----------SSSSSSSSSSSSSSSSSSS--S-----S-S------S-----SS-SS---------------------S-
SSS-S-SSSSSSSSSSS--SSS-SSS-SS-S-SS---------S------------------------------------
-------------------------------------------------------S-----S------------------
--------------------------------------------------------------------------------
------------S------------------------SSS----------------------------------------
----------------------------SSSS-------------S-S------------------------------S-
SS-SSS------------------------------------------------S-----------------S-------
----------------------------------------------------SSS-------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S---------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S----------------------S---
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------------
---SS---SS----------------S----------------------------------------------SSSSSSS
-------S------------------------------------------------------------------------
------------------------------------------------
>forward_854
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------GCAGCGAGAGAGAGAGACAG--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
>reverse_2009
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------GCGCGCAACAAAAGAGATGA----------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
