>input_sequence_87488
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-------------------------------------------------------------------------------A
TGGGAAAAGTGGTCTTCGGGGCATATCACCTTCAATGCAAGCTATTTGTTTCAGAAGAAACTTTTGATTGGCGTGTTTTA
GCTCGTGGGAACACCCAACTCTTCTCTCTGGTGAACTGCACATAG-----------------------------------
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>chr6A_1_TraesCS6A01G269300
GGCCGTGCCGCGATAGCTTATTTTCAGGATTGTGCCGGGATGCTTTTCTGTTTGGATTTTTCAT-CTTCCTTTGGTTGGC
TGATTTAGATTTTT------GCGCGGAAAGGTTCCTTTTCTCC-CGTTAAAAGGCGCCTTTTTTCTTCCTATAGATGAGA
AAAATCTATGT-TTTCTGTGCTTGCAATGTAAATTGTGATTGAGGTGGCAATGCAGAAGTTTGAGAGAGAAGCTCAGAAA
AACAAGGTAGCAATGCAGGCGTTTTCCCACTAATTCCAACCTGAGGCGATATTTTGAGTTCGGAGATGTTTCTATATGTA
TGGATTTTGCTACGATAAATCCGTTTCAGCCAGTAATGGGATAGCAACATTATTTTCGAATTTTGATGTTTCAAGCAACG
GTATAGCTCGATCACCACGCCAATTGAGATGCCGGGTCGTTATTGCGATTGATGAATAGCATCATTGATAGTACCGATAC
TGTTTGCAATGTCCAGCTCCACCAATGTTATACACTTCTACCCTGGTATTAATGTATGCCTAGTATTATGTGATTTAGGT
AAACGAGTGCTATATCTGATTCTGATATTTCCCTGAGAAATATGTTTCGTTTTGTGCATTAATGTTGGTTCTAGCAACAC
GTGAGCCGCAAATTATTATCCACTTAAAATGATTCAATTCAAAATTTTGCTGTGTACAGACCTCCATGTATCTTAGTATA
TTAAAAGGGATATTAAAATGGATTCTTTAAACTAGATTCGGAAATGTTGCTAAATTTGTGTTGGTTTCTGATAGAGATCG
TCAGTTGACTGCGTTATATATAATCCAAATGGTTCTACGTCGCATCAATGTTCATGCTTCGTGGAAATGATTCTTGTTC-
-------------------------CTTTGGCATACACTATACCATGTCATCGAGCGCAAAAAGTTTTATAATCGACCAC
ATCATTCTGATTCAAATAAATT----GTGTCAGATTGCACCAGCAGTGATCTTGGGAGCTTAAAGTGTTCATCAAAGACA
TGGGAAAAGTGGTCTTCGGGGCATATCACCTTCAATGCAAGCTATTTGTTTCAGAAGAAACTTTTGATTGGCGTGTTTTA
GCTCGTGGGAACACCCAACTCTTCTCTCTGGTGAACTGCACATAGTGGTTCTATGCTCAACGACAGCAGGCTGAGGCGAT
CCTGAAGCGATACTCCAGTCTATGCTCCACATCTACATGTAAAATACCTGCTTTGTTTTTCCTTTCTTTTGTTCTATTGG
CTAAGTTTTTATCATCTCATTTTGTTTATTCTCTGTTTATCAGCGCATCATCTCCAGAGTAACTTCTTATTGTAGTCAAA
TCCAGTAGTAGATGCTGATCATGTAAACTGGCCAATGATGTGCTCGTAGAATAATTAAATTCTACTATTGGGAGTTCAAA
CTGTTCTTTCCTGCATGTATTAGCATGTGAAAA-CTAAATCAACCATATCTCTTGAAACATTCTGAATTTCTTTTCTCTT
----AATATATGCAGGGTCAACCATCTTTACTGCATTCAGTCTCCATCTGTCACTCCCTAGTTAGTTGCCATTTGCTT-G
CTGTATATCATCTGAGGTCAAGGCTCATCCTTGCTATATTCTGGGACTCTACTATGGTTGCTGTGGGATCTTCGTGAGGG
GACCAAATCCAAGACAGCACAAACCAGTGGAGGCCCACTGTTCAATTGACGGATCATACATCTGTTTGTGCGAACTGATA
GACAAGATATTGGTCGCTTAGACTTTGAAACACTTCTCTGTGCTTGTTGTTGATTTTTCTTGATACCTGGTTGTCCCAAA
GGAAAAAGGCTTCTTGATACCTGGTTGTCCCAAAGGAAAAGGCTTCTTGATACCTGGTTGT-CCAAAGGAAAAAGCTTCT
ATCAGGCAACAAAATTACCGGAAAAATGGATAGGTAACCCTTTTTGTATTTTTTCTCTCCTCTGGATAACAGTTGTATTG
AATTCCTGTTTCGGGTTTGCATTTTTCTTAGAGCGCCTTATCTTTGCAGATTCAAGTTGATTAAGGAAGTTGGTGATGGG
ACATTCGGGAGCGTATGGCGCGCTATAAATAAACAAAATGGTGAAGTTGTACGTATCCTATGATATATCACTCTTGCTAT
CTTTACCTGAAC
>chr6D_1
GGCGGTGCCGCGATAGCTTGTTTTCAGGATTATGCTGAGATGCTTTCCTGTTTGGATTTTCCAT-CTTCCTTTTGTTGGC
TGATTTACATTTTT------ACGCGGAAAGGTTACTTTT-TCC-CGTTAAAAGGCGCCCTTTTTCTTCCTATAGATGAGA
AAAATCTATGTGTTTTCGTGCTTGCAATGTAAATTGTGATTGAGGTGGCAATACAGAAGTTTGAGAGAGAAGCCCAGAAA
AATAAGGCAGCAACGCAGGCGTCTTCCCATTGGTTCCAACCGGAGGCGGTATTTTGAGTTCGGAGATGTTTCTATATGTA
TGGATTTTGCTACGATAAAACCGTTTGAGCCTGTAATTGGATAGCAACATTATTTACAAACTTCGATGTTTCAAGCAGCG
GTATAGCTTGATCACCATGCCAATTGAGATGCCGGGTCGTTACTGCGATTGGTGAATAGCATCAATGATGTCAATATG--
-GTTTGCAATGTCCAGCTCCACCAATGTTATACACTTCTACCCTGGTATTAATGTATGCCTAGTATTATGTGATTTAGGT
AAACGAGTGCTATATCTGATTCTGATATTTCCCTGAGAACTATGTTTCATTTTGTGCATTAATGTTGGCTCTAGCAACAC
GTGGGCCGTAAATTATTACCCACTTAAAATGATTCAATTCAAATTTTTTCTGTGTACAGACCTCCATATATCTTAGTATA
TTAA------------AATGGATGCTTTAAACTAGATTTGGGAATGTTGCTAAATTTGTGTTGTTTTCTGATAGAGGTCG
TCAGTCGACTGCGTTATATATAATCCAAATGGTTCTATGTCGCACCGATGTTCATGCTTCATGGAAATGATTCTTGTTC-
-------------------------CTTTGGCATACACTATACCATGTCATGGAGCGCAAAAAGTTTTATAATCGACCAC
ATCATTCTGATTCAAATACATTCATTGTATCAGATTGCACAAGCAGTGATCTTAGGAGCTTAAAGTGTTCGTCAAAGACA
TGGGAAAAGTGGTCTTCGGGGCATATCACCTTCAATGCAAGCTATTTGTTTCAGAAGAAACTTTTGATTGGCGTGTTTTA
GCTCGTGGGAACACCCAACTCTTCTCTCTGGTGAACTGCACATAGTGGTTCTATGCTCAACGACAGCAGGCTGAGGCGAT
CCTGAAGCGATACTCCAGTCTATGCTCCACATCTACATGTAAAATACCTGCTTTGTTTTTCCTTTCTTTTG---------
-----------------CATTTTG--TATTCTCTATTTATCAGCGCATCATCTTCAGAGTAACTTCTTATCGTAGTCAAA
TCCAGTAGTTGATGCTGATCATGTAAACTGGCTAATGATGTGC-------------------------------------
-------------------------------------------CCATATCTCTTGAAACATTCTGAATTTCTTTTCTCTT
TGCTAATATATGCAGGGTCAACCATCTTTACTGCATTCAGTCTCCATCTGTCACTCCCTAGTTAGTTGCCATTTGCTTTA
CTGTGTACCATCTGAGGTCAAGGCTCATCCTTGCTATATTCTGGGACTCTACTATGGTTGCTGTGGGATCTTCGTGAGGG
GACCAAAGCCAAGACAGCACAAACTAGTGGAGGCCCACTGTTCAATTCACGGATCATAAATCTGTTCGTGCGGACTGATA
GACAATATATTGGTCGCTTAGACTTTGAAACACTTCTCTGTGCTTGTTGTTGATTTTTCTTGATACCTGGTTA-------
---------------------------TCCCAAAGGAAAAGGCTTCTTCATACCTGGTTGTCCCAAAGGAAAAAGCTTCT
ATCAGGCAACAAAATTACTGGAAAAATGGATAGGTAACCCTTTTTGTATTTTT-CTCTCCTCTGGATATCAGTTGTATTG
AATTCCTGTTTCGGGCTTGCATTTTTCTTAGAGCGCCTTATCTTTGCAGATTCAAGTTGATTAAGGAAGTTGGTGATGGG
ACATTCGGGAGCGTATGGCGCGCTATAAATAAACAAAATGGTGAAGTTGTACGTATCCTATGATATATCACTCTTGCTAT
CTTTACGTGAAC
>chr6B_2
-GCGGTGCCGCGGTAGCTTGTTTTCAGGATTATACTGGGGTGCTTTTTTGTTTGGATTTTTCGTCCTTCCTTTTGTTGTC
TGATTTAGATTTTTCTGTTTGCGCGGAAAGGTTCCTTTT-TTCTCGTTAAAAGGCGCCTTTTTTCTTCCTATAGATGAGA
AAAATCTATGTGTTTTTGTGCCTGCAATGTAAATTGTGATTGAGGTGGCAATACAGAAGTTTGAGAGAGAAGCTCAGAAA
AATAAGGTAGCAATGCAGGCGTCTTCCCATTGGTTCCAACCCGAGGCGATATTTTGAATTCGGAGATGTTTCTATATGTA
TGGATTTTGCTACGATAAAACCGTTTGAGCCAGTAATGAGATAGCAACATTGTTTTCCAACTTCCATGTTTCAAGCAGTG
GTATAGCTTGATCACCATGCCAATTGAGATGCCGGCTCGTTATTGCGATTGATGAATAGCATCATTGATATCGATATG--
-GTTTGCAATGTCCAGCTCCACCAATATTATAGACTTCTACCCTGATATTAATGTATGCCTAGTATTATGTGATTTAGGT
AAAAGAGTGCTATACCTGATTCTGATATTTCCCTGAGAACTATGTTTCATTTTGTGCGTTAGTGTTGGTTCTAGCAACAC
GTGGGCCGTAAATTACTACCCACTTAAAATGATTCAATTCAAATTTTTGCTGTGTACATACCCCCATATATCTTAGTATA
TTAA------------AATGGATGCTTTAAACTAGATTTGGAAATGTTGCTAAGTTTGTGTTGTTTTCTGATAGAGATCG
TCAGTCGACTGCGTTATATATAATCCAAATGGTTCTATGCCGTATTGATGTTCATGCTTCATGTAAATGATTCTTGTTCC
TTTTTTTTGAGGGTGATTCTTATTCCTTTGGCATACACTATACCATGTCATCGAGCGCAAAAAGTGTTATAATCGACCAC
ATCATTCTGATTCAAATACATT----GTATCAGATTGCACCAGCAGTGATCTTCGGAGTTTAAAGTGTTCATCAAAGACA
TGGGAAAAGTGGTCTTCGGGGCATATCACCTTCAATGCAAGCTATTTGTTTCAGAAGAAACTTTTGATTGGCGTGTTTTA
GCTCGTGGGAACACCCAACTCTTCTCTCTGGTGAACTGCACATAGTAGTTCTATGCTCAACGACAGCAGGCTGAGGCGAT
CCTGAAGCGATACTCCAGTCTATGCTCCACATCTACATGTAAAATACCTGCTTTGTTTTTCCTTTCTTTTGTTCTATTGG
CTAAGCTTTTATCATCTCATTTTG--CATTCTCTATTTATCAGCGCATCATCTCCAGACTAACTTCTTATTGTAGTCAAA
TCCAGTAGTAGATGCTGATCATGTAAACTGGCCAATGATGTGCTCGTAGAATAATTAAATTCTACTATTGGGAGTTCAAA
CTGTTCTTTCCTGCATGTATTGGCATGTGAAAAACTAAATCAACCATATCTCTTGAAACATTCTGAATTTCTTTTCTCTT
TGCTAATATATGCAGGGTCAACCATCTTTACTGCATTCAGTCTCCATCTGTCACTCCCTAGTTAGTTGCCATTTGCTTTG
CTGTATACCATCTGAGGTCAAGGCTCATCCTTGCTATATTCTGGGACTCTACTATGATTGCTGTGGGATCTTTGTGAGGG
GACCAAATCCAAGACAGCACAAGCTAGTGGAGGCCCACTGTTCAATTGACGGATCATACATCTGTTCGTGCGAACTGATA
GACAAGATATTGGTCGCTTAGACTTTGAAACACTTCTCTGTGCTTGTTGTTGATTTTTCTTGATACCTGGTT--------
--------------------------GTCCCAAAGGAAAAGGCTTCTTGATACCTGGTTGTCCCAAAGGAAAAAGCTTCT
ATCACGCAACAAAATTACCGGAACAATGGATAGGTAACCCTTTTTGTAATTTT-TTCTCCTCTGGATAACAGTTGTATTG
AATTCCTGTTTTGGGTTTGCATTTTTCTTAGAGCGCCTTATTTTTGTAGATTCAAGTTGATTAAGGAAGTTGGTGATGGG
ACATTCGGGAGCGTATGGCGCGCTATAAATAAACAAAATGGTGAAGTTGTACGTATCCTATGAT----CACTCTTGCTAT
CTTTGCCTGAAC
>SNPs
---S---------------S-----------S---S-------------------------------------S------
---------------------------------------S----------------------------------------
---------------S------------------------------------S---------------------------
--S-------------------S------S-SS--------S--------------------------------------
-------------------S------S------------------------------S--S--S-------------S--
--------S--------S----------------------------------------------------SS-SSSSSSS
S-------------------------------------------------------------------------------
---------------------------------------S--------S-------------------------------
---S----S---------S------------------------S-----------------------S------------
----SSSSSSSSSSSS-------S--------------S------------------------S----------------
-----S-------------------------------S--------S-------------S-------------------
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------------------S---------S------------------------S--------------------------
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-----S------------------SS--------S---------------------------------------------
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---------------------S----------------------------------------------------------
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-------S------------------------------------------------------------------------
------------------------S-----------------------------------------S-------------
------------------------------------------------------------------------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------------------
-----------------------------------------------------S--------------------------
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>forward_272
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------------ATGCAGGCGTTTTCCCACTA------------------------------------------------
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>reverse_1608
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-------TCATCTGAGGTCAAGGCTCA-----------------------------------------------------
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