>input_sequence_87486
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------ATGGACAGAGCTGATACTTCAGGCTTTCTTGGTAGTGGCTCACATTGCAAGAACATTGACGTGTGCTTCCATTT
TGTGTATACTATATACTTTCTCGGTGGTGAAGTTGTTAAACTGGGGTTTTGA----------------------------
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>chr2B_1_TraesCS2B01G552700
TGTTGTCAGGCATGGTAG-ATTCAGTTTGGCATGGATTTGGATCAAGTTTGCATTCTGAGATAGGTTTGTTTCTGGGATT
TTGCTGCTGGTGCTGTACACATGATGCTTGCCATTTTTGCCTCT-AGAGTCGGCTGAAAACATTTTTTTCCTTTGG--CC
CCTTCATTAGTATTTTTGGGTTGAGTAAATCCTAGTATGAGAAGAACGCATGTGGACATAATTACCAATTTATCACCA--
--TATGTATCTATATCCTAGTTTCTCAATTTAACCC-AGCATATAAATATATATAATAAATCCTTTGTTTCCCTAAGAAG
TCGAAGCTCTAGATGTTGAGAAAAGAACAAT-----------TTTCTTCCACTTGTCCCGCTAAACTGTGCCAGGAAGTT
TTAACATGTATGACTCCAACTCAAATTTACAGTATAGGTACTGAAATCAGCTGTATTGGTTTTAAGCAAACACCAT----
----------AGCGCCAATTCATGTTCATGTCAAGCAAACACCATAGCGCA-----------AATTCTAATCATGATTCA
CCATTTCCTCATGTACATTAATGAACAGAAAATACATGCACCGGCTGATCAGATATATGTTTGATGTATTCCTGTTAGCA
TTTTTGTCCAAGGTCGTATGAACTGGTACTTGTTAATCTCATATGTCTGGATTTCCTTGCAAGATTTTGGATCACTTTAT
TATTTTCACCTGTAGTTCTTGTTCTATTTCAGAAACATTAAGTTGGTTGTGGATGAGTAGGCTTGGTACTT-AGTCTTTT
GAGTTCTCCTTCATATTTAAGAAACATTAGCTTCTGTCAGTTGTTTTCTTTTGATCACTTCTTATTTTGTGTAGCTAAAT
TTTGCCTGCTACCTGACTTTCTTGCAGATCTCAGAGGACATTTAATTGTGTGACATGAAGTCTGTTTGTGGATTCTGTTT
TATGCATAGGATGCAGTGCACATGATTTTTGCCCGTAGTGCTGCAACATCATCGTTTCTCGTTCGGGACCAGTAAGCCTA
TTGCTCATGGACAGAGCTGATACTTCAGGCTTTCTTGGTAGTGGCTCACATTGCAAGAACATTGACGTGTGCTTCCATTT
TGTGTATACTATATACTTTCTCGGTGGTGAAGTTGTTAAACTGGGGTTTTGATTGT-------------TCGGCAGAAGC
TATTGGCCACTTGACAGCGCTCTAGTCTTTCTCTGTCCTAATCCTACCTTATACATATATATGTGTACTGGGATGGACCT
TAATATGACAAATCTTTGGCTTCATGGGAAGGAACATATAGCCGCTTCATTCTCTCAAGCTGAACA--------------
-------------------------------------------------GAGCTCAGAAGCAGTTGAGACTTCTAGAAAA
TCATTTGGGCAGAGGAGTCGAAGTTCCCCTGTTCCTGATGATGACTGCAGGCTGGTCCTAGGACTAGGACCAATGCCAAA
TCTGTATTCTGCTGATAGTCAATCATCCGGTGGGAACAAAGTTAAATTATCTGGAATTTTGTTCACCCAACATTGTACTG
CAAGTGATCCTGGGTTACAGGTGGACACTTCAAGAGGCAGCTCAAGAAATTTACAGTCCACAACAGTGCCTGGCCGCAAG
GAGCATTCACATAAAAGAAAAAATGGTATTGTATTCCCACATATTGGCGAGGGATCAACTTCAGCCAAAAGGAAGCCAGG
TGATTATGAGCTGTCACCTCTGTTTGCTCCAAGATCAGATGGTCTTTTTATTGATAGAACAACGGCAGAGCCTGATGTCC
AGCAACACCTTGGAACCGGATATGAGGCCGATCATGATTTATCTCTTGAGCAGCACGAGGTTGAGCTTAGCCCCGAGCCT
TCAGCAACAACTGGTTGTTCTTTTGCCGCAACTTCAGATACAGTAGATAGTACTGATAATGGGGAGCAGAAAAGTCATCA
GCGCCATCTCAAGAAGTGCAGGTTCAATGGGTGTTCCAAGGGCGGAAGGGGTGCCTCAGGGCTCTGTATTTCCCATGGCG
GCGGTCACCGGTGCCAAAAGCCAGGTTGCAATAAAGGGGCCGAGAGCCGAACTGCGTACTGCAAATCTCACGGAGGAGGA
AAGCGGTGCCAGGAGCTAGGCTGCACCAAAAGCGCCGAAGGGAAGACAGAGTTCTGCATCGCTCATGGCGGTGGGCACCG
GTGCAGGG
>chr2A_1
TGTTGTCAGGCATGTTAGGATTCAGCTTGGCATGGATTTGGATCAAATTTGCATTCTGATATAGGT-TGTTTCTTGGATT
TGGCTGCCGGTGTTGTACACATGATGCTTGTCATTTTTGTCTCTTAGAGTCGGCTCATT---TTTCTTTTCATGTGGTCC
CCTTCATTAGTATTTTTGTGTCGAGTAAATCCTAGTATGAGAAGAACGCATGTGGACATAACTACCAACTTATCACCATG
CATATGTATCTATATCCTAGTTTCTCTATTTAACCC-AGCATACAA----ATATAATAAATCCTTTGTTTCCCTAAGAAG
TCGAAGCTCGAGATGTTGAGAAAAGATCAAT-----------TT-CTTCCACTTGTCCCACTAAACTGTGCCAGGAAGTT
TTAACATGTATGACTGCAACTCAAATTTACAGTATAGGTAGTGAAACTAGCTGTATTGGTTTTAAAGTAGCACTAC----
-TAGCTACTAAGCGCTAATTCATGTTCATCTCAAGCAAACACCATAGCTCA-----------AATTCTAATCATGATTCA
CCATTTCCTCATGTACATTAATGAACTGAAAATACATGCACCGCCTGATCAGATATATGTTTGATGTATTCCTGTTAGCA
TTTTTGTCCAAGGTCATATGAACTGGTACTTGTTAATCTCATACTTCTGGATTTCCTTACAAGTTTTTGAATCACTTTAT
TATTTTCACCTGTGGTTCTTGCTCTATTTCAGAAACATTAAGTTGGTTGTGGATGAGTAGGCTTGATACTTAAGTCTTTT
GAGTTCTCCTTCATATTTAAGAAACATTAGCTTCTGTCAGTTGTTTTCTTTTTATCAGTTCTTATTTTGTGTAGCTAAAT
TTTGTCTGCTACTTGACTTTCTTGCAGATCTCAGAGGACGTTTAATTGCATGATATGAAGTCTGTTTGTGGATTCCCTTT
TATGCATAAGATGCAGTGCACATGATTTTTGCCCGTAGTGCTGCAACATCACGATTTCTCACTTGGGACCAGCAAGCCTA
AGGCTCATGGACAGAGCTGATACTTCAGGCTTCATCGGTAGTGGCTCGAATTGCAAGAATATTGACGTGTACTTCCATTT
TGTGTATACTATATACTTTCTTGGTGGTGAAGTTGTTAAACTGGGGTTTTGATTAT-------------TCGGC------
-------CACTGGACAGCGCTCTAGTCTTTCTCTGTCCTAGTCCTACATTATACACATATATATTTACTGGGATGGACCT
TAATATGACAAATCTTTGGCTTCATGGGAAGGAACATATAGCCGCTTCATTCTCTCAAGCTGAACA--------------
-------------------------------------------------GAGCTCAGAAGCAGTCGAGACTTCTAGAAAA
TCATTTGGGCAGAGGAGTCGAAGTTCCCCTGTTCCTGATGATGACTGCAGGCTGGTCCTAGGACTTGGACCAATGCCAAA
TCTGTATTCCGCTGATAGCCAATCATCCGGTGGCAACAAAGTTAAATTATCTGGAATTTTGTTCACCCAACATTGTACTG
CAAGTGATCCTGGGTTACTGGTGGGGACTTCAAGAGGCAGCTCAAGAAATTTGCAGTCCACAACACTGCCTGGCCGCAAG
GAGCATTCACACAAAAGAAAAAATGGTGTTGTCTTCCCACATATTGGCGAGGGATCAACTTCAGCCAAAAGGAAGTCAGG
TGATTATCAGCTATCACCTCTGTTTGCTCCAAGATCAGATGTTCTTTTTATTGATAGAACAATGGCAGAGCCTGATGTCC
AGCAACACCTTGGAACCGGATATGAGGCCGATCATGATTTATCTCTTGATCAGCACGGGGTTGAGCACAGCCCCGAGCCT
TCTGCAACAACTGGCTGTTCTTTTGCTGCAACTTCAGATACAATAGATAGCACTGATAATGGGGAGCAGAAAAGTCATCA
GCGCCATCTCAAGAAGTGTCGGTTCAATGGGTGTTCCAAGGGCGGAAGGGGTGCATCAGGACTCTGCATTTCCCATGGCG
GCGGTCACCGGTGCCAAAAGCCAGGTTGCAATAAAGGGGCCGAGAGCCGAACGGCGTACTGCAAATCGCACGGAGGAGGA
AAGCGGTGCCAAGAGCTAGGCTGCACCAAAAGCGCCGAAGGGAAGACAGAGTTCTGCATCGCTCATGGCGGTGGGCACCG
GTGCGGGG
>chr2D_1
TGTTATCAGGCATGGTAG-ATTCTGTTTGGCATGGATTTGGATCAAATTTGCATTCTGAGATAGGTTTGTTTCTGGGATT
TTGCTGCTGGTGCTGTACACATGATGCTTGTCATTTTTGCCTCT-AGAGTCCACTGATT---TTTTTTTCCTGTGG--CC
ACTTCATTTGTATTTTTGGGTCGAATAAATCCTAGTATGAGAAGACCGCATGTGGACATATCTACCAACTTATCAC----
CATATGTATCTATATCCTAGTTTCTCAATTCACCTATAGCATACTA----ATATAATAAATCCTTTGTTTCCCTAAGAAG
TCGAAACTGTAGATGTTGTTAAAAAAATTGTCATATGAAGTCTT-CTTCCACTTGTCCCACTAA-CTGTACCAGGAAGTT
TTAACATGTATGACTGCAACTCAAATTTACAGTATAGGTAGTGAAATCAGCTGTATTGGTTTTAAAGTAGCACTGTTATA
TTAGCTACTAAGCACTAATTCATGTTCCTCTCAAGCAAACACCATGTGAACACCATAGTGCTAATTCTAATCATGATTCA
CCATTTCCTCATGTACAGTAATGGACTGAAAAAACATGCACCGGCTAATCAGATATATGTTTGATGTATTTCT-TTAGCA
TTTCTGTGCAAGCTCATATGAAATGGTACTTGTTATTCTCATACTTCTGGATTTCCTTACAGGCTCTTGAATCACTTTAT
TGATTTCAACTGTGGTTCTTGTTCTCTTTCAGAAACATTAAGTTGGTTGTGGATGAGTAGGCTTGATATTT-AATCTTTT
GGGTTCTCCATCATATTTAAGGAACATTAGCTTCAGTCGGTTGTTTTCTTTTGATGAGTTCTTATCTTGTGTAGCTAAAT
TTTGCCTGCTACCTGACTTTCTTGCAGATCCCAGAGGACATTTAATTGCGTGATATGAAGTCTGTTTGCGGATTCTTTTT
TATGCATAAGCTGCAGTGCACATGATTTTTGCCCGTAGTGCTGCAACATCACCGTTTCTCGTTTGGGACCAGTAAGCCTA
ATGCTCATGGACAGAGCTGATACTTCAGGCTTTCTCGGTAGTGGCTCGCATTGCAAGAACATTGACGTGTACTTCCATTT
TGTGTACACTATATACTTTCTCGGTGGTGAAGTTGTTAAACTGGGGTTCTGATTGGTCAGCAGAAGCTATCGGC------
-------CACTGGGCAGCGCTCAAGTCATTTTCTGTCCTAATCCTACCTT------ATATATATTATCTGGGATGGACCT
TACTATGACAAATCTTTGTGTTCGTGGGAAGGAACACATAGCTGCTTCATTCTCTCAAGTTGAACCCGCTGCCGCAAATT
GCAGGAGTGAAGCCCTAGATGTAGCATCAGTTAAAGTTGGTTGCCTCGGGAGCTCGGAAGCAGCTGAGACTTCTAGAAAA
TCATTCGAGCAGAGAAGTCGAAGTTTCCCTGTTCCTGATGATGACTGCAGGCTGGTCCTAGGACTTGGACCAATGCCAAA
TCTGTATTCTGCTGACAGTCAATCATCTGGTGGGAACAGAGTTAAATTATCTGAAACTTTGTTCACTCCACATTGTACCG
CAAGTGATTCTGGATTAGTGTTGGCGGCTTCAAGAGGCAGCTCAAGAAATTTGCAGTCCACGATAGTGCCTGGCCGCAAG
GAGCATTCACATAAAAGGAAAAATGGTATTGTGTTCCCACTTATTGATGAGGGATCAACTTCAGCCAAAAGGAGATCAGG
TGATTATGAGCTGTCACCTCAGTTTGCTCCAAGATCAGATGTTCTTTTTATTGATAGAACAACGGCAGAGCCTGATGTCC
AGCAACACCTTGGAACCGGATATGAGGCCGATCGTGATTTATCTCTTGATCAGCACGGGGTCGAGCTTAGCCCCGAGCCT
TCAGCAACAACTGGTTGTTCTTTTGCTGCAACGTCAGACACACTAGATAGCACTGATAACGGGGAGCAGAAAAATCATCA
GCGCCATCTCAAGAAGTGTAGGTTCAATGGGTGTTCCAAGGGCGGAAGGGGTGCATCAGGACTCTGCATTTCCCATGGCG
GCGGTCACCGGTGCCAGAAGCCAGGTTGCAACAAAGGGGCCGAGAGCCGAACGGCGTACTGCAAATCTCACGGAGGAGGA
AAGCGGTGCCAAGAGCTAGGCTGCACCAAAAGCGCCGAGGGGAAGACAGAGTTCTGCATCGCCCACGGCGGCGGGCACCG
GTGCGGGG
>SNPs
----------------------------------------------S---------------------------------
------------------------------S--------------------------SSSSS------------------
---------------------S---------------------------------------S------S-----------
-------------------------------------------S--SSSS------------------------------
--------------------------------------------S--------------S--------------------
---------------S------------------------S------------------------SSS-S---S------
---------------S-------------S------------------S-------------------------------
--------------------------S-----------------------------------------------------
---------------S---------------------------SS-------------S----S-----S----------
-------------S---------------------------------------------------S--------------
---------------------------------------------------------S----------------------
------------------------------------------------S----S----------------------S---
--------S------------------------------------------S-----------S----------------
S----------------------------------S-----------S----------------------S---------
--------------------------------------------------------------------------SSSSSS
SSSSSSS----S-------------------------------------------S------S-S---------------
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-----------------------------------------------------------------S--------------
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------------------S-----SS--------------------------S---------------------------
--------------------------------S------------------------------------------S----
-----------------------------------------S--------------------------------------
-------------------------------------------------S-------S----------------------
--------------------------S---------------S-------S-----------------------------
------------------S-----------------------------------S-----S-----S-------------
----------------------------------------------------S---------------------------
-----------S--------------------------------------------------------------------
----S---
>forward_138
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--------------------------------------TGCCTCTAGAGTCGGCTGAA----------------------
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>reverse_1207
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------CCACTTGACAGCGCTCTAGT------------------------------------------------------
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