>input_sequence_87483
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-----------------------------------------------ATGCGGGATATAAAAACATATCTCTCTGTAGCA
CCCGTGCTAAGTACTCTATGGTTTGGTGCTTTAGCAGGTTTATTGATAGAAATTAATCGTTTATTCCCAAATGCTTTGTC
ATTCCCTTTTTTTTAA----------------------------------------------------------------
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>chr5D_1_TraesCS5D01G009600
ACTCTTTTCCAGACTAATTAGGAATTCTTTTCTTGGTCATTGAGATTCGTGGATAATTTAGAGTACTATTTAGGGATAGA
TCGTACCTCTTTCTTTATCCCCTCGAACAAATCGAAATGATTGAAGTTTTTCTATTTGGAATCGTCTTAGGCCTAATTCC
TATTACTTTAGCGGGATTATTCGTGACTGCGTATTTGCAATACAGGCGTGGGGATCAGTTGGATCTTTGATTGAGTCAT-
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-------------------------------------------------------------------------------T
---TTTTTTATTGACCTCCTCCAGACCAGGGAGGAGGTCAAATTGAAATTGGAGTTACAATTCAATTTTGTTAAGTTATT
TT-ACTCTGCTTCGACATAAAATAGATGGAATCACGCTCTGCAGGATTCGAACCTACGACATCGGGTTTTGGAGACCCGC
GTTCTACCGAACTGAACTAAGAGCACTTTCATTCATTCAAAAAGAAAATATTTTTCTATTCCTAATGTATCTCACGTACG
TATAGTCTCCACAAATTCAAGTTATACCCACTTTACTTTAATTGATCTCGTCGCTACTGCCTATAAAGAAGAAAGAAGTA
ATAGGTAGGGATGACAGGATTTGAACCTGTGACATTTTGTACCCAAAACAAACGCGCTACCAAGCTGCGCTACATCCCTT
TTCCAAATTAAATTGTTGTACAATGCCATTGTACTCAATTCCTGTCTTCTTTTCCACATCATAATTTTCTTCTTCTTTCT
ATTTTCTTCTTCTTTCTTTCTCTATCTATATATAGAACCCTCGTGTCATTTCTTCTTTTTGGTCTCATATAATTAAGGAA
TTATATACATATAAAATCCAATATAATTTCGCCTATAAAGGAAGGATTACTTTTCCTTGCTAATATATAGGAAGAAGGGG
TCATCTTTTTC-TTTTTTAGGGATAGGAAAATTTCGTCAATATGGTTCATTTTATATAT--AGCATAACAATCTTGGGCA
AGAGTTTATGATCATATATGTATTCCAACAAGGAAGGAGGATTTTCAATGCGGGATATAAAAACATATCTCTCTGTAGCA
CCCGTGCTAAGTACTCTATGGTTTGGTGCTTTAGCAGGTTTATTGATAGAAATTAATCGTTTATTCCCAAATGCTTTGTC
ATTCCCTTTTTTTTAATTCTAGTTATTGCTATGGGAGGGATAGATTTCTTCGTGATATGACAAAATTTGATCCTTTTCAA
TCTTTTTTTAGTATCGGAAGGAAAA-AGAAAGAAAAGATGGATTGGATTGAACCTCAGAGTCATTAAAAATTTGGTAAAC
CCCATTTTTGAAAATAGAAATTCAATTTAAAGGGGTACCCAAGCTAAATAAGACCTCAGAAATCAGAGCATAGAAAAGGC
GGGGCTGGCTAATTAAATGAAAGGATTTCGAACCAAAATCTTTGCTAATTCGACAAGGATTGTATTCTTTAATTATTTCT
CTATTTTTTATTACTTAATTTAAGAAT----AAAAAAATTATTCTAATGAATTTTATTCTTCTTCTTCGGATTCAAAATA
GAAGAATAAAAGAATAAGTAGAAGAATTAAGTTAAGTCAATCCGAAAACAAAAGGAGGTTCATGGCCAAGGGAAAAGATG
TTAGAATCAGAGTTATTTTGGAATGCATTAGTTGTGTTCGAAAAGGTGCCAATGAGGAATCGACGGGGATTTCTAGATAT
AGTACTCAAAAGAATCGCCACAATACACCCGGACAATTAGAATT--CAAAAATTTTTGTCGTTATTGTCGCAAGCATACG
ACTCATCATGAAATAAAGAAATAGGAACATCGTGTGTTCGATCTTTCCAAACAACAGAAAGAGTAAGAACTTCATATTTA
ATATATAAAGAAAACATAGTATAGAATACAAAATACAAATCAACTCATCTGATTTCCGGTAGATATTATTTCATATGTAT
AGAGGGTATTCATATACTATAATATGAATCAAAT---------------------------AAGATATGGATCAAAGAAA
AACTACTTCTTCTGGATCCTAAATTAATAAAATAAAGAAGTGAATTTTCAAATTTTCAAATTTTAAATAAGGAATAAATC
ATGTATACATCTAAACAACCTTTTCTTAAATCAAAGCAACCCTTTAGTAAATCCAAGCAAACTTTTAATAAATCCAAGCA
ACCCTTTCGT
>chr5D_1
ACTCTTTTCCAGACTAATTAGGAATTCTTTTCTTGGTCATTGAGATTCGTGGATAATTTAGAGTACTATTTAGGGATAGA
TCGTACCTCTTTTTTTATCCCCTCGAACAAATCGAAATGATTGAAGTTTTTCTATTTGGAATCGTCTTAGGCCTAATTCC
TATTACTTTAGCGGGATTATTCGTGACTGCGTATTTGCAATACAGGCGTGGGGATCAGTTGGATCTTTGATTGAGTCAT-
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-------------------------------------------------------------------------------T
-TTTTTTTGATTGACCTCCTCCAGACCAGAGAGGAGGTCAAATTGAAATTGGAGTTACAATTCAATTTTGTTAAGTTAT-
TT-ACTCTGCTTCGACATAAGATAGATGGAATCACGCTCTGTAGGATTTGAACCTACGACATCGGGTTTTGGAGACCCGC
GTTCTACCGAACTGAACTAAGAGCGCTTTCATTCATTCAAAAAGAAAATCTTTTTCTATTCCTAATGTATCTCACGTACG
TATAGTCTCCACAAATTCAAGTTATACCCACTTTACTTTAATTGATCTCGTCGCTACTGCCTATAAAGAAGAAAGAAGTA
ATAGGTAGGGATGACAGGATTTGAACCTGTGACATTTTGTACCCAAAACAAACGCGCTACCAAGCTGCGCTACATCCCTT
TTCCAAATTAAATTGTTGTACAATGCCATTGTACACAATTCCTGTCTTCTTTTCCACATCATAATTTTCTTGTTCTTTCT
ATTTTCTTCTTCTTTCTTTCTCTATCTATATATAGAACCCTCGTGTCATTTCTTCTTTTTGGTCTCATATAATTAAGGAA
TTATATACATATAAAATCCAATATAATTTCGCCTATAAAAGAAGGATTACTTTTCCTTGGTAATATATAGGAAGAAGGGG
TCATCTTTTTC-TTTTTTAGGGATAGGAAAATTTCGTCGATATGGTTCATTT--TATAT--AGCATAACAATCTTGGGCA
AGAGTTTATGATCATATATGTATTCCAACAAGGAAGGAGGATTTTCAATGCGGGATATAAAAACATATCTCTCTGTAGCA
CCCGTGCTAAGTACTCTATGGTTTGGTGCTTTAGCAGGTTTATTGATAGAAATTAATCGTTTATTCCCAGATGCTTTGTC
ATTCCCTTTTTTTTAATTCTAGTTATTGCTATGGAAGGGATAGATTTCTTCGTGATATGACAAAATTTGATCCTTTTCAA
TCTTTTTTTAGTATCGGAAGGAAAA-AGAAAGAAAAGATGGATTGGGTTGAACCTCAGAGTCATTAAAAATTTGGTAAAC
CCCATTTTTGAAAATAGAAATTCAATTTAAAGGGGTACCCAAGCTAAATAAGGCCTCAGAAATCAGAGCATAGAAAAGCC
GGGGCTGGCTAATTAAATGAAAGGATTTCGAACCAAAATCTTTGCTAATTCGACAAGGATTGTATTCTTTAATTATTTCT
CTATTTTTTATTACTTAATTTAAGAAT--AAAAAAAAATTATTCTAATGAATTTTATTCTTCTTCTTCGGATTCAAAATA
GAAGAATAAAAGAATAAGTAGAATAATTAAGTTAAGTCAATCCAAAAAGAAAAGGAGGTTCATGGCCAAGGGAAAAGATG
TTAGAATCAGAGTTATTTTGGAATGCATCAGTTGTGTTCGAAA-------------------------------------
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>chr1D_1
ACTCTTTTCCAGACTAATTAGGAATTCTTTTCTTGGTCATTGAGATTCGTGGATAATTTAGAGTACTATTTAGGGATAGA
TCATACCTCTTTTTTTATCCCCT-GAACAAATCGAAATGATTGAAGTTTTTCTATTTGGAATCGTCTTAGGCCTAATTCC
TATTACTTTAGCGGGATTATTCGTGACTGCGTATTTGCAATACAGGCGTGGGGATCAGTTGGATCTTTGATTGAGTC-T-
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-------------------------------------------------------------------------------T
-TTTTTTTGATTGACCTCCTCCAGACCAGAGAGGAGGTCAAATTGAAATTGGAGTTACAATTCAATTTTGTTAAGTTAT-
TTTACTCTGCTTCGACATAAAATAGATGGAATCACGCTCTGTAGGATTTGAACCTACGACATCGGGTTTTGGAGACCCGC
GTTCTACCGAACTGAACTAAGAGCGCTTTCATTCATTCAAAAAGAAAATCTTTTTCTATTCCTAATGTATCTCACGTACG
TATAGTCTCCACAAATTCAAGTTATACCCACTTTACTTTAATTGATCTCGTCGCTACTGCCTATAAAGAAGAAAGAAGTA
ATAGGTAGGGATGACAGGATTTGAACCTGTGACATTTTGTACCCAAAACAAACGCGCTACCAAGCTGCGCTACATCCCTT
TTCCAAATTAAATTGTTGTACAATGCCATTGTACACAATTCCTGTCTTCTTTTCCACATCATAATTTTCTTCTTCTTTCT
ATTTTCTTCTTCTTTCTTTCTCTATCTATATATAGAACCCTCGTGTCATTTCTTCTTTTTGGTCTCATATAATTAAGGAA
TTATATACATATAAAATCCAATATAATTTCGCCTATAAAAGAAGGATTACTTTTCCTTGCTAATATATAGGAAGAAGGGG
TCATCTTTTTC-TTTTTTAGGGATAGGAAAATTTCGTCGATATGGTTCATTTTATATAT--AGCATAACAATCTTGGGCA
AGAGTTTATGATCATATATGTATTCCAACAAGGCAGGAGGATTTTCAATGCGGGACATAAAAACATATCTCTCTCTAGCA
CCCGTGCTAAGTACTCTATGGTTTGGTGCTTTAGCAGGTTTATTGATAGAAATTAATCGTTTATTCCCAGATGCTTTGTC
ATTCCCTTTTTTTTAATTCTAGTTATTGCTATGGGAGGGATAGATTTCTTCGTGATATGACAAAATTTGATCCTTTTCAA
TCTTTTTTTAGTATCGGAAGGAAAA-AGAAAGAAAAGATGGATTGGGTTGAACCTCAGAGTCATTAAAAATTTTGTAAAC
CCCATTTTTGAAAATAGAAATTCAATTTAAAGGGGTACCCAAGCTAAATAAGGCCTCAGAAATCAAAGCATAGAAAAGGT
GGGGCTGGCTAATTAAATGAAAGGATTTCGAACCAAAATCTTTGCTAATTCGACAAGGATTGTATTCTTTAATTATTTCT
CTATTTTTTATTACTTAATTTAAGAAT----AAAAAAATTATTCTAATGAATTTTATTCTTCTTATTCGGATTCAAAATA
GAAGAATAAAAGAATAAGTAGAAGAATTAAGTTAAGTCAATCCAAAAAGAAAAGGAGGTTCATGGCCAAGGGAAAAGATG
TTAGAATCAGAGTTATTTTGGAATGCATCAGTTGTGTTCGAAAAGGTGCCAATGAGGAATCGACGGGGATTTCTAGATAT
AGTACTCAAAAGAATCGCCACAATACACCCGGACAATTAGAATT--CAAAAATTTTTGTCGTTATTGTCGCAAGCATACG
ACTCATCACGAAATAAAGAAATAGGAACATCGTGTGTTCGATCTTTCCAAACAACAGAAAGAGTAAGAACTTCATATTTA
ATATATAAAGAAAACATAGTATAGAATACAAAATACAAATCAACTCATCTGATTTCTGGTAGATATTATTTCATATGTAT
AGAGGGTATTCATATACTATAATATGAATCAAAT---------------------------AAGATATGGATCAAAGAAA
AACTACTTCTTCTGGATCCTAAATTAATAAAATAAAGAAGTGAATTTTCAAATTTTCAAATTTTAAATAAGGAATAAATC
ATGTATACATCTAAACAACCTTTTCTTAAATCTAAGCAACCCTTTAGTAAATCCAAGCAAACTTTTAATAAATCCAAGCA
ACCCTTTCGT
>chr1D_1
ACTCTTTTCCAGACTAATTAGGAATTCTTTTCTTGGTCATTGAGATTCGTGGATAATTTAGAGTACTATTTAGGGATAGA
TCGTACCTCTTTTTTTATCCCCTCGAACAAATCGAAATGATTGAAGTTTTTCTATTTGGAATCGTCTTAGGCCTAATTCC
TATTACTTTAGCGGGATTATTCGTGACTGCGTATTTGCAATACAGGCGTGGGGATCAGTTGGATCTTTGATTGAGTCAT-
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-------------------------------------------------------------------------------T
TTTTTTTTGATTGACCTCCTCCAGACCAGAGAGGAGGTCAAATTGAAATTGGAGTTACAATTCAATTTTGTTAAGTTAT-
TTTACTCTGCTTCGACATAAAATAGATGGAATCACGCTCTGTAGGATTTGAACCTACGACATCGGGTTTTGGAGACCCGC
GTTCTACCGAACTGAACTAAGAGCGCTTTCATTCATTCAAAAAGAAAATCTTTTTCTATTCCTAATGTATCTCACGTACG
TATAGTCTCCACAAATTCAAGTTATACCCACTTTACTTTAATTGATCTCGTCGCTACTGCCTATAAAGAAGAAAGAAGTA
ATAGGTAGGGATGACAGGATTTGAACCTGTGACATTTTGTACCCAAAACAAACGCGCTACCAAGCTGCGCTACATCCCTT
TTCCAAATTAAATTGTTGTACAATGCCATTGTACACAATTCCTGTCTTCTTTTCCACATCATAATTTTCTTGTTCTTTCT
ATTTTCTTCTTCTTTCTTTCTCTATCTATATATAGAACCCTCGTGTCATTTCTTCTTTTTGGTCTCATATAATTAAGGAA
TTATATACATATAAAATCCAATATAATTTCGCCTATAAAAGAAGGATTACTTTTCCTTGGTAATATATAGGAAGAAGGGG
TCATCTTTTTC-TTTTTTAGGGATAGGAAAATTTCGTCGATATGGTTCATTT--TATATACAGCATAACAATCTTGGGCA
AGAGTTTATGATCATATATGTATTCCAACAAGGAAGGAGGATTTTCAATGCGGGATATAAAAACATATCTCTCTGTAGCA
CCCGTGCTAAGTACTCTATGGTTTGGTGCTTTAGCAGGTTTATTGATAGAAATTAATCGTTTATTCCCAGATGCTTTGTC
ATTCCCTTTTTTTTAATTCTAGTTATTGCTATGGAAGGGATAGATTTCTTCGTGATATGACAAAATTTGATCCTTTTCAA
TCTTTTTTTAGTATCGGAAGGAAAA-AGAAAGAAAAGATGGATTGGGTTGAACCTCAGAGTCATTAAAAATTTGGTAAAC
CCCATTTTTGAAAATAGAAATTCAATTTAAAGGGGTACCCAAGCTAAATAAGGCCTCAGAAATCAGAGCATAGAAAAGGC
GGGGCTGGCTAATTAAATGAAAGGATTTCGAACCAAAATCTTTGCTAATTCGACAAGGATTGTATTCTTTAATTATTTCT
CTATTTTTTATTACTTAATTTAAGAAT--AAAAAAAAATTATTCTAATGAATTTTATTCTTCTTCTTCGGATTCAAAATA
GAAGAATAAAAGAATAAGTAGAAGAATTAAGTTAAGTCAATCCAAAAAGAAAAGGAGGTTCATGGCCAAGGGAAAAGATG
TTAGAATCAGAGTTATTTTGGAATGCATCAGTTGTGTTCGAAAAGGTGCCAATGAGGAATCGACGGGGATTTCTAGATAT
AGTACTCAAAAGAATCGCCACAATACACCCGGACAATTAGAATT--CAAAAAATTTTGTCGTTATTGTCGCAAGCATACG
ACTCATCACGAAATAAAGAAATAGGAACATCGTGTGTTCGATCTTTCCAAACAACAGAAAGAGTAAGAACTTCATATTTA
ATATATAAAGAAAACATAGTATAGAATACAA-------------------------------------------------
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>chr1D_1
ACTCTTTTCCAGACTAATTAGGAATTCTTTTCTTGGCCATTGAGATTCGTGGATAATTTAGAGTACTATTTAGGGATAGA
TCATACCTCTTTTTTTATCCCCTCGAACAAATTGAAATGATTGAAGTTTTTCTATTTGGAATCGTCTTAGGCCTAATTCC
TATTACTTTAGCGCGATTATTCGTGAATGTGTATTTGCAATACAAGCGTGAGGATCAGTTGGATCTTTGATTGATTCA--
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-TTTTTTTGATTGACCTCCTCCAGACCAGAGAGGAGGTCAAATTGAAATTGGAGTTACCATTCAATTTTGTTAAGTTAT-
TTTGCTCTGCTTTGACATAAGATAGATGGAATCACGCTCTGTAGGATTTGAACCTACGACATCGGGTTTTGGAGACCTGC
GTTCTACCGAACTGAAGTAAGAGCGCTTTCATTCATTCAAAAAGAAAATCTTTTTCTAATCCTAATGTATCTCACGTACG
TATAGTCTCCACAAATTCAAATTATACCCACTTTACTTTAATTGATCTCGTCGCTACTGCCTATAAGGAAGAAAGAAGTA
ATAGGTAGGGATGCCAGTATTTGAACTTACGACATTTTGTACCCAAAACAAACACGCTACCAAGTTGCGCTACATCCCTT
TTCCAAACCAAATTCTTGTACAATGCCATTGTACACAATTCATGTCTTCTTTTCCACATCATGATTTTCTTCTTCTTTGT
ATTTTCTTCTTCTTTCTTTCTCTATCTATATATAGAACCCCCGTGTCATTTCTTCTTTTTGGTCTCAAATAATTAAGGAA
TTATATACATATAAAATCCAATATAATTTTGCTTATAAAAGAAGGATTACTTTTCCTTGGTAATATATAGGAAGAAGGGG
TCATCTTTTTATTTTTTTAGGGATAGGAAAAATTCGTCGATATGGTTCATTT--TATAT--AGCATAACAATCTTGGGCA
AGAGTTTATGATCATATATGTATTCCAACAAGGAAGGAGGATTTTCAATGGGGAATATAAAAACATATCTTTCTGTAGCA
CCCGTGCTATGTACTTTATGGTTTGGTGCTTTAGCAGGTTTATTGATAGAAATTAATCGTTTATTCCCAGATGCTTTGTC
ATTCCCTTTTTTTC-ATTCTAGTTATTGCTATGGGAGGGATAGATTTCTTCGTGATATGACAAAATTTGATCCTTTTCTA
TCTTTTTTTAGTATCGGAAGGAAAA-AGAAAGAAAAGATGGATTGGGTTGAACGTCAGAGACATTAAAAATTTGGTAAAC
CCCATTTTTGAAAATAGAAATTCAATTTAAAGGGGTACCCAAGCTAAATAAGGCCTCGGAAATCAGAGCATAGAACAGGC
GGGGTTGGCTAATGAAATGAAAGGATTTCGAACGAAAATCTTTGCTAATTCGACAAGGATTGTATTCTTTAATTATTTAT
CTATTTTT-ATTACTTGATTTAAGAAT--AAAAAAA--T--TTCTAATGAATTTTATTCTTCTTCTTCGGATTCAAAATA
GTAGAATAAAAGAATAAGTAAAAGAATTAAGTTAAGTCAATCCAAAAAGGAAAGGAGGTTCATGGCCATGGGAAAAGATG
TTAGAATCAGAGTTATTTTGGAATGCATCAGTTGTGTTCGAAAAGGTGCCAATGAGGAATCGACGGGGATTTCTAGATAT
AGTACTCAAAAGAATCGCCACAATACACCCGGACAATTAGAATT--AAAAAA--ATTGTCGTTATTGTCGCAAGCATACG
ACTCATCACAAAATAAATAAATAGGAACATCGTGTGTTCGATCTTTCCA-------------------------------
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>chrUn_1
ACTCTTTTCCAGACTAATTAGGAATTCTTTTCTTGGTCATTGAGATTCGTGGATAATTTAGAGTACTATTTAGGGATAGA
TCGTACCTCTTTTTTTATCCCCTCAAACAAATCGAAATGATTGAAGTTTTTCTATTTGGAATCGTCTTAGGCCTAATTCC
TATTACTTTAGCGGGATTATTCGTGACTGCGTATTTGCAATACAGGCGTGGGGATCAGTTGGATCTTTGATTGAGTCAT-
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-------------------------------------------------------------------------------T
TTTTTTTTGATTGACCTCCTCCAGACCAGAGAGGAGGTAAAATTGAAATTGGAGTTACAATTCAATTTTGTTAAGTTAT-
TTTACTCTGCTTCGACATAAAATAGATGGAATCACGCTCTGTAGGATTTGAACCTACGACATCGGGTTTTGGAGACCCGC
GTTCTACCGAACTGAACTAAGAGCGCTTTCATTCATTCAAAAAGAAAATCTTTTTCTATTCCTAATGTATCTCACGTACG
TATAGTCTCCACAAATTCAAGTTATACCCACTTTACTTTAATTGATCTCATCGCTACTGCCTATAAAGAAGAAAGAAGTA
ATAGGTAGGGATGACAGGATTTGAACCTGTGACATTTTGTACCCAAAACAAACGCGCTACCAAGCTGCGCTACATCCCTT
TTCCAAATTAAATTGTTGTACAATGCCATTGTACACAATTCCTGTCTTCTTTTCCACATCATAATTTTCTTCTTCTTTCT
ATTTTCTTCTTCTTTCTTTCTCTATCTATATATAGAACCCTCGTATCATTTCTTCTTTTTGGTCTCATATAATTAAGGAA
TTATATACATATAAAATCCAATATAATTTCGCCTATAAAAGAAGGATTACTTTTCCTTGCTAATATATAGGAAGAAGGGG
TCATCTTTTTC-TTTTTTAGGGATAGGAAAATTTCGTCGATATGGTTCATTTTATATAT--AGCATAACAATCTTGGGCA
AGAGTTTATGATCATATATGTATTCCAACAAGGAAGGAGGATTTTCAATGCGGGATATAAAAACATATCTCTCTGTAGCA
CCCGTGCAAAGTACTCTATGGTTTGGTGCTTTAGCAGGTTTATTGATAGAAATTAATCGTTTATTCCCAGATGCTTTGTC
ATTCCCTTTTTTTTAATTCTAGTTATTGCTATGGGAGGGATAGATTTCTTCGTGATATGACAAAATTTGATCCTTTTCAA
TCTTTTTTTAGTATCGGAAGGAAAA-AGAAAGAAAAGATGGATTGGGTTGAACCTCAGAGTCATTAAAAATTTTGTAAAC
CCCATTTTTGAAAATAGAAATTCAATTTAAAGGGGTACCCAAGCTAAATAAGGCCTCAGAAATCAGAGCATAGAAAAGGT
GGGGCTGGCTAATTAAATGAAATGATTTCGAACCAAAATCTTTGCTAATTCGACAAGGATTGTATTCTTTAATTATTTCT
CTATTTTTTATTACTTAATTTAAGAAT--AAAAAAA--TTATTCTAATGAATTTTATTCTTCTTCTTCGGATTCAAAATA
GAAGAATAAAAGAATAAGTAGAAGAATTAAGTTAAGTCAATCCAAAAAGAAAAGGAGGTTCATGGCCAAGGGAAAAGATG
TTAGAATCAGAGTTATTTTGGAATGCATCAGTTGTGTTCGAAAAGGTGCCAATGAGGAATCGACGGGGATTTCTAGATAT
AGTACTCAAAAGAATCGCCACAATACACCCGGACAATTAGAATTCAAAATTT--TTTGTCGTTATTGTCGCAAGCATACG
ACTCATCACGAAATAAAGAAATAGGAACATCGTGTGTTCGATCTTTCCAAACAACAGAAAGAGTAAGAACTTCATATTTA
ATATATAAAGAAAACATAGTATAGAATACAAAATACAAATCAACTCATCTGATTTCCGGTAGATATTATTTCATATGTAT
AGAGGGTATTCATATACTATAATATGAATCAAAT---------------------------AAGATATGGATCAAAGAAA
AACTACTTCTTCTGGATCCTAAATTAATAAAATAAAGAAGTGAATTTTCAAATTTTCAAATTTTAAATAAGGAATAAATC
ATGTATACATCTAAACAACCTTTTCTTAAATCTAAGCAACCCTTTAGTAAATCCAAGCAAACTTTTAATAAATCCAAGCA
ACC-------
>chr3B_1
ACTCTTTTCCAGACTAATTAGGAATTCTTTTCTTGGTCATTGAGATTCGTGGATAATTTAGAGTACTATTTAGGGATAGA
TCGTACCTCTTTTTTTATCCCCTCGAACAAATCGAAATGATTGAAGTTTTTCTATTTGGAATCGTCTTAGGACTAATTCC
TATTACTTTAGCGGGATTATTCGTGACTGCGTATTTGCAATACATGCGTGGGGGTCAGTTGGATCTTTGATTGAGTCA--
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TTTTTTTTGATTGACCTCCTCCAGACCAGAGAGGAGGTCAAATTGAAATTGGAGTTACAATTCAATTTTGTTAAGTTAT-
TTTACTCTGCTTCGACATAAGATAGATGGAATCACGCTCTGTAGGATTTGAACCTACGACATCGGGTTTTGGAGACCCGC
ATTCTACCGAACTGAACTAAGAGCGCTTTCATTCATTCAAAAAGAAAATATTTTTCTATTCCTAATGTATCTCACGTACG
TATAGTCTCCACAAATTCAAGTTATACCCACTTTACTTTAATTGATCTCGTCGCTACTTCCTATAAAGAAGAAAGAAGTA
ATAGGTAGGGATGACAGGATTTGAACCTGTGACATTTTGTACCCAAAACAAACGCGCTACCAAGCTGCGCTACATCCCTT
TTCGAAATTAAATTGTTGTACAATGCCATTGTACACAATTCCTGTCTTCTTTTCCACATCATAATTTTCTTGTTCTTTCT
ATTTTCTTCTTCTTTCTTTCTCTATCTATATATAGAACCCTCATGTCATTTCTTCTTTTTGGTCTCATATAATTAAGGAA
TTATATACATATAAAATCCAATATAATTTGGCCTATAAAAGAAGGATTACTTTTCCTTGGTAATATATAGGAAGAAGGGG
TCATCTTTTTC-TTTTTTAGGGATAGGAAAATTTCGTCGATATGGTTCATTTTATATAT--AGCATAACAATCTTGGGCA
AGAGTTTATGATCATATATGTATTCCAACAAGGAAGGAGGATTTTCAATGCGGGATATAAAAACATATCTCTCTGTAGCA
CCCGTGCTAAGTACTCTATGGTTTGGTGCTTTAGAAGGTTTATTGATAGAAATTAATCGTTTATTCCCAGATGCTTTGTC
ATTCCCTTTTTTT-AATTCTAGTTATTGCTATGGAAGGGATAGATTTCTTCGTGATATGACAAAATTTGATCCTTTTCAA
TCTTTTTTTAGTATCGGAAGGAAAA-GGAAAGAAAAGATGGATTGGGTTGAACCTCAGAGTCATTAAAAATTTGGTAAAC
CCCATTTTTGAAAATAGAAATTCAATTTAAAGGGGTACCCAAGCTAAATAAGGCCTCAGAAATTAGAGCATAGAAAAGGC
GGGGCTGGCTAATTAAATGAAAGGATTTCGAACCAAAATCTTTGCTAATTCAACAAGGATTGTATTCTTTAATTATTTCT
CTATTTTTTATTACTTAATTTAAGAAT--AAAAAAAA--TATTCTAATGAATTTTATTCTTCTTCTTCGGATTCAAAATA
GAAGAATGAAAGAATAAGTAGAATAATTAAGTTAAGTCAATCCAAAAAGAAAAGGAGGTTCATGGCCAAGGGAAAAGATG
TTAGAATCAGAGTTATTTTGGAATACATCAGTTGTGTTCAAAAAGGTGCCAATGAGGAATCGACGGGGATTTCTAGATAC
AGTACTCAAAAGAATCGCCACAATACACCCGGACAATTAGAATTCAAAAATT--TTTGTCGTTATTGTCGCAAGCATATG
ACTCATCACGAAATAAAGAAATAGGAACATCGTGTGTTCGATCTTTCCAAACAACAGAAAGAGTAAGAACTTCATATTCA
ATATATAAAGAAAACATAGTATAGAATACAAAATACAAATCAACTCATCTGATTTCCGGTAGATATTATTTCATATGTAT
AGAGGGTATTCATATACTATAATATGAATCAAAT---------------------------AAGATATGGATCAAAGAAA
AACTACTTCTTCTGGATCCTAAATTAATAAAATAAAGAAGTGAATTTTCAAATTTTCAAATTTTAAATAAGGAATAAATC
ATGTATACATCTAAACAACCTTTTCTTAAATCTAAGCAACCCTTTAGTAAATCCAAGCAAAATTTTAATAAATCCAAGCA
ACCCTTTCGT
>chr6D_1
ACTCTTTTCCAGACTAATTAGGAATTCTTTTCTTGGTCATTGAGATTCGTGGATAATTTAGAGTACTATTTAGGGATAGA
TCGTACCTCTTTTTTTATCCCCTCGAACAAATCGAAATGATTGAAGTTTTTCTATTTGGAATCGTCTTAGGCCTAATTCC
TATTACTTTAGCGGGATTATTCGTGACTGCGTATTTGCAATACAGGCGTGGGGATCAGTTGGATCTTTGATTGAGTC-TT
TTTTTTTGATTGACCTCCTCCAGACCAAAGAGGAGGTCAAATTGAAATTGGAGTTACAATTCAATTTTGTTAAGTTATTT
TACTCTGCTTCGACATAAAATAGATGGAATCACGCTCTGTAGGATTTGAACCTACGACATCGGGTTTTGGAGACCCGCGT
TCTACCGAACTGAACTAAGAGCGCCTTCATTCATTCAAAAAGAAAATCTTTTTCTATTCCTAATGTATCTCACGTACGTA
TAGTCTCCACAAATTCAAGTTATACCCACTTTACTTTAATTGATCTCGTCGCTACTGCCTATAAAGAAGAAAGAAGTAAT
AGGTAGGGATGACAGGATTTGAACCTGTGACATTTTGTACCCAAAACAAACGCGCTACCAAGCTGCGCTACATCCCTTTT
CCAAATTAAATTGTTGTACAATGCCATTGTACACAATTCCTGTCTTCTTTTCCACATCATAATTTTCTTCTTCTTTCTAT
TTTCTTCTTCTTTCTTTCTCTATCTATATATAGAACCCTCGTGTCATTTCTTCTTTTTGGTCTCATATAATTAAGGAATT
ATATACATATAAAATCCAATATAATTTCGCCTATAAAAGAAGGATTACTTTTCCTTGGTAATATATAGGAAGAAGGGGTC
ATCTTTTTCTTTTTTAGGGATAGGAAAATTTCGTCGATATGGTTCATTTTATATATAGCATAACAATCTTGGGCAAGAGT
TTATGATCATATATGTATTCCAACAAGGAAGGAGGATTTTCAATGCGGGATATAAAAACATATCTCTCTGTAGCACCCGT
GCTAAGTACTCTATGGTTTGGTGCTTTAGCAGGTTTATTGATAGAAATTAATCGTTTATTCCCAGATGCTTTGTCATTCC
CTTTTTTTTAATTCTAGTTATTGCTATGGAAGGGATAGATTTCTTCGTAATATGACAAAATTTGATCCTTTTCAATCTTT
TTTTAGTATCGGAAGGAAAAAGAAAGAAAAGATGGATTGGGTTGAACCTCAGAGTCATTAAAAATTTGGTAAACCCCATT
TTTGAAAATAGAAATTCAATTTAAAGGGGTACCCAAGCTAAATAAGGCCTCAGAAATCAGAGCATAGAAAAGGCGGGGCT
GGCTAATTAAATGAAAGGATTTCGAACCAAAATCTTTGCTAATTCGACAAGGATTGTATTCTTTAATTATTTCTCTATTT
TTTATTACTTAATTTAAGAATAAAAAAAAATTATTCTAATGAATTTTATTCTTCTTCTTCGGATTCAAAATAGAAGAATA
AAAGAATAAGTAGAATAATTAAGTTAAGTCAATCCAAAAAGAAAAGGAGGTTCATGGCCAAGGGAAAAGATGTTAGAATC
AGAGTTATTTTGGAATGCATCAGTTGTGTTCGAAATCCTTTCATTTAATTAGCCAGCCCCGCCTTTTCTATGCTCTGATT
TCTGAGGCCTTATTTAGCTTGGGTACCCCTTTAAATTGAATTTCTATTTTCAAAAATGGGGTTTACCAAATTTTTAATGA
CTCTGAGGTTCAACCCAATCCATCTTTTCTTTCTTTTTCCTTCCGATACTAAAAAAAGATTGAAAAGGATCAAATTTTGT
CATATCACGAAGAAATCTATCCCTTCCATAGCAATAACTAGAATTAAAAAAAAGGGAATGACAAAGCATCTGGGAATAAA
CGATTAATTTCTATCAATAAACCTGCTAAAGCACCAAACCATAGAGTACTTAGCACGGGTGCTACAGAGAGATATGTTTT
TATATCCCGCATTGAAAATCGTCCTTCCTTGTTGGAATACATATATGATCATAAACTCTTGCCCAAGATTGTTATGCTAT
ATATAAAATGAACCATATCGACGAAATTTTCCTATCCCTAAAAAAGAAAAAGATGACCCCTTCTTCCTATATATTACCAA
GGAAAAGTAATCCTTCTTTTATAGGCGAAATTATATTGGATTTTATATGTATATAATTCCTTAATTATATGAGACCAAAA
AGAAGAAATGACACGAGGGTTCTATATATAGATAGAGAAAGAAAGAAGAAGAAAATAGAAAGAACAAGAAAATTATGATG
TGGAAAAGAAGACAGGAATTGTGTACAATGGCATTGTACAACAATTTAATTTGGAAAAGGGATGTAGCGCAGCTTGGTAG
CGCGTTTGTTTTGGGTTCAAAATGTCACAGGTTCAAATCCTGTCATCCCTACCTATTACTTCTTTCTTCTTTATAGGCAG
TAGCGACGAGATCAATTAAAGTAAAGTGGGTATAACTTGAATTTGTGGAGACTATACGTACGTGAGATACATTAGGAATA
GAAAAAGATTTTCTTTTTGAATGAATGAAAGCGCTCTTAGTTCAGTTCGGTAGAACGCGGGTCTCCAAAACCCGATGTCG
TAGGTTCAAATCCTACAGAGCGTGATTCCATCTATCTTATGTCGAAGCAGAGTAAAATAACTTAACAAAATTGAATTGTA
ACTCCAATTTCAATTTGACCTCCTCTCTGGTCTGGAGGAGGTCAATCAAAACAAAATGACTCAATCAAAGATCCAACTGA
TCCCCACGCCTGTATTGCAAATACGCAGTCACGAATAATCCCGCTAAAGTAATAGGAATTAGGCCTAAGACGATTCCAAA
TAGAAAAACTTCAATCATTTCGATTTGTTCGAGGGGATAAAAAAAGAGGTACGATCTATCCCTAAATAGTACTCTAAATT
ATCCACGAATCTCAATGACCAAGAAAAGAATTCCTAATTAGTCTGGAAAAGAGTCGTAGAATGCCAGGAATCCCAAAGAA
AGATTTTTCTTTTCTGAATTATAATTATTCAGTCAATTCAAATAAGGCGTGGGGATCAGTTGGATCTTTGATTGAGTCAT
TTTTTTTTGATTGACCTCCTCCAGACCAGAGAGGAGGTCAAATTGAAATTGGAGTTACAATTCAATTTTGTTAAGTTAT-
TTTACTCTGCTTCGACATAAGATAGATGGAATCACGCTCTGTAGGATTTGAACCTACGACATCGGGTTTTGGAGACCCGC
GTTCTACCGAACTGAACTAAGAGCGCTTTCATTCATTCAAAAAGAAAATCTTTTTCTATTCCTAATGTATCTCACGTACG
TATAGTCTCCACAAATTCAAGTTATACCCACTTTACTTTAATTGATCTCGTCGCTACTGCCTATAAAGAAGAAAGAAGTA
ATAGGTAGGGATGACAGGATTTGAACCTGTGACATTTTGTACCCAAAACAAACGCGCTACCAAGCTGCGCTACATCCCTT
TTCCAAATTAAATTGTTGTACAATGCCATTGTACACAATTCCTGTCTTCTTTTCCACATCATAATTTTCTTGTTCTTTCT
ATTTTCTTCTTCTTTCTTTCTATATCTATATATAGAACCCTCGTGTCATTTCTTCTTTTTGGTCTCATATAATTAAGGAA
TTATATACATATAAAATCCAATATAATTTCGCCTATAAAAGAAGGATTACTTTTCCTTGGTAATATATAGGAAGAAGGGG
TCATCTTTTTC-TTTTTTAGGGATAGGAAAATTTCGTCGATATGGTTCATTTTATATAT--AGCATAACAATCTTGGGCA
AGAGTTTATGATCATATATGTATTCCAACAAGGAAGGAGGATTTTCAATGCGGGATATAAAAACATATCTCTCTGTAGCA
CCCGTGCTAAGTACTCTATGGTTTGGTGCTTTAGCAGGTTTATTGATAGAAATTAATCGTTTATTCCCAGATGCTTTGTC
ATTCCCTTTTTTTTAATTCTAGTTATTGCTATGGGAGGGATAGATTTCTTCGTGATATGACAAAATTTGATCCTTTTCAA
TCTTTTTTTAGTATCGGAAGGAAAA-AGAAAGAAAAGATGGATTGGGTTGAACCTCAGAGTCATTAAAAATTTGGTAAAC
CCCATTTTTGAAAATAGAAATTCAATTTAAAGGGGTACCCAAGCTAAATAAGGCCTCAGAAATCAGAGCATAGAAAAGGT
GGGGCTGGCTAATTAAATGAAAGGATTTCGAACCAAAATCTTTGCTAATTCGACAAGGATTGTATTCTTTAATTATTTCT
CTATTTTTTATTACTTAATTTAAGAAT--AAAAAAA--TTATTCTAATGAATTTTATTCTTCTTCTTCGGATTCAAAATA
GAAGAATAAAAGAATAAGTAGAAGAATTAAGTTAAGTCAATCAAAAAAGAAAAGGAGGTTCATGGCCAAGGGAAAAGATG
TTAGAATCAGAGTTATTTTGGAATGCATCAGTTGTGTTCAAAAAGGTGCCAATGAGGAATCGACGGGGATTTCTAGATAT
AGTACTCAAAAGAATCGCCACAATACACCCGGACAATTAGAATTCAAAAAAA--TTTGTCGTTATTGTCGCAAGCATACG
ACTCATCACGAAATAAAGAAATAGGAACA---------------------------------------------------
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>chr2D_11
----------AGACTAATCAGGAATTCTTTTCTTGGTCATTGAGATTCGTGGATAATTTAGAGTACTATTTAGGGATAGA
TCGTACCTCTTTTATTATCCCCTCGAACAAATCGAAATGATTGAACTTTTTCTATTTGGAATCGTCTTAGGCCTAATTCC
TATTACTTTAGCGGGATTATGCGTGACTGCGTATTTGCAATACAGGCGTGGGGATCAGTTGGATCTTTGATTGAGTCA--
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TTTTTTT-TATTGACCTCCTCCAGACTAGAGAGGAGGTCAAATTGAAATTGGAGTTACAATTCAATTTTGTTAAGTTAT-
TTTACTATGCTTCGACATAAAATAGATGGAATCATGCTCTGTAGGATTTGAACCTATGACATCGGGTTTTGGAGACCCGC
GTTCTACCGAACTGAACTAAGAGCGCTTTCATTCATTCAAAAAGAAAATATTTTTCTATTCCTAATGTATCTCACGTACG
TATAGTCTCCACAAATTCAAGTTATACCCACTTTACTTTAATTGATCTCGTCGCTACTGCCTATAAAGAAGAAAGAAGTA
ATAGGTAGGGATGACATGATTTGAACCTGTGACATTTTGTACCCAAAACAAACGCGCTACCAAGCTGCGCTACATCCCTT
TTCCAAATTAAATTGTTGTACAATGCCATTATACACAATTCCTGTCTTCTTTTCCACATCATAATTTTCTTCTTCTTTCT
ATTTTCTTCTTCTTTCTTTCTCTATCTATATATAGAACCCTCATGTCATTTCTTCTTTTTGGTCTCATATAATTAAGGAA
TTATATACATATAAAATCTAATATAATTTCTCCTATAAAGGAAGGATTACTTTTCCTTGGTAATATCTAGGAAGAAGGGG
TCATCTTTTTC-TTTTTTAGGGATAGGAAAATTTCGTCGATATGGTTCATTTTATATAT--AGCATAACAATCTTGGGCA
AGAGTTTATGATCATATATGTATTCCAACAAGGAAGGAGGATTTTCAATGTGGGATATAAAAACATATCTCTCTGTAGCA
CCCATGCTAAGTACTCTATGGTTTGGTGCTTTAGCAGGTTTATTGATAGAAATTAATCGTTTATTCCCAGATGCTTTGTC
ATTCCCTTTTT-T-AATTCTAGTTATTGCTATGGGAGGGATAGATTTCTTCGTAATATGA-AAATTTTGATCCTTTTCAA
TCTTTTTTTAGTATCGGAAGGAAAAAAGAAAGAAAAGATGGATTGGGTTGAACCTCAGAGTCATAAAAATTTTGGTAAAC
CCCATTTTTGAAAATAGAAATTCAATTTAAAGGGGTACCCAAGCTAAATAAGGCCTCAGATATCAGAGCATAGAAAAGGC
GGGGCTGGCTAATTAAATGAAAGGATTTCGAACCAAAATCATTGCTAATTCGACAAGGATTGTGTTCTTTAATTATTTCT
CTATTTTTTATTACTTAATTTAAGAATAAAAAAAAA--TTATTCTAATGAATTTTATTCTTCTTCTTCGGATTCAAAATA
GAAGAATAAAAGAATAAGGAGAAGAATTAAGTTAAGTCAATCCAAAAAGAAAAGGAGGTTCATGGCCAAGGGAAAAGATG
TTAGAATCAGAGTTATTTTGGAATGCATCAGTTGTGTTCGAAAAGGTGCCAATGAGGAATCGACGGGGATTTCTAGATAT
AGTACTCAAAAGAATCGCCACAATACACCCGGACAATTAGAATTCAAAAATT--TTTGTCCTTATTGTCGCAAGCATACG
ACTCATCACGAAATAAAGAAATAGGAACATCGTGTGTTCGATCTTTCCAAACAACAGAAAGAGTAAGAACTTCTTATTTA
ATATATAAAGAAAACATACTATAGAATACAAAATACAAATCAACTCATCTGATTTCCGGTAGATATTATTTCATATGTAT
AGAGGGTATTCATATACTATAATATGAATCAAATAAGATAAGATATGGATCAAAGAAAAATAAGATATGGATCAAAGAAA
AACTACTTCTTCTGGATCCTAAATTAATAAAATAAAGAAGTGAATTTTCAAATTTTCAAATTTTAAATAAGGTATAAATC
ATGCATACATCTAAACAACCTTTTCTTAAATCTAAGCAACCCTTTAGTAAATCCAAGCAAACTTTTAATAAATCCAAGCA
ACCCTTTCGT
>SNPs
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-----------------------------S-------------------------------------------------S
-----------------------------------------S------S-------------------------------
------------------------S-------------------------------------------------------
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----------------------------------S---------------------------------------------
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--------------------------------------S-----------------------------------------
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----------------------------------------------S---------------------------------
----------------------------------------------------S---------------------------
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-------------------------------------------S----S-------------------------------
----------------------------S---------------------------------------------------
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>forward_3150
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----------TTGACCTCCTCCAGACCAGG--------------------------------------------------
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>reverse_4449
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------------------------------------------------CAAAAGGAGGTTCATGGCCA------------
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