>input_sequence_87481
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----------------------------------------ATGGCAATGCCATGGGAGATGGTGGTGTGCATAGCGGGCA
ACGTGTGGGTGCTGCTCGACGGCTGGATCTCCGTCTGCTTCCTGGCCGCGGACGAGGCCGCCCGCCTCCTCCGGTCGGCT
ACCGATTGA-----------------------------------------------------------------------
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>chr5B_1_TraesCS5B01G162000
AGCTCAGATGGTTAGATTCTTTGTGGTGGAACTATCCATTAGGGTTCAAGTCTTAGACTTGGCACTGGTGCTTGCATTTT
TTTTAATTTATTTCAGGCTTTCCGACAATATTCATTCAGTGGGAGTTTTTAACTATGAAGGCAACTGTGCTGCCTTCGTC
AATCTCAGGATGATATGCCGGCTCAATCTTTCGAAGATACTCATAAGAGTCGGTTGTGCGTGCGTGCACACGTTCATAGA
GATAGATGTGTGCGCATGTATGAGTGTCTGCGTTTGTATTGAGTTAGAAAAAAATAGTTGGGAAATTAGTTGTGTACGTA
CACTGAAATATTCCGCAAAATAATTGGTGTCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCCACGTTACCACC
ACGGCACCACCCCACGTTGTCATAATCGAGGTCCATCCTCCACCTCACAGATCGTTCCGACCTGCCGCAGCCGCTGCGGC
CATTGATGCGCAAAATTATCTCATCCTCCCAGCTAAACAGGTCAATTATTTGCTCGTGGGTCGCCGGCCTGAGCTGGTAT
CATATGAGTTAGTTGTGTGAATCATTGTACGCCTCCGTAAGCCATCTGTCCACGACAACTCTCCTTGCCTACCTTCTCGT
CACCTTCCTCAGTTAGCAGCCGCGAGCAAGCAATGCCAATACATACATGCACTTGGTGTATTCGCGAGCTGGTTTATCTG
CGCCTGCGCGAGAGGGAGAGTAGAAGCTCCGACCTTGCTAATGGCAATGCCATGGGAGATGGTGGTGTGCATAGCGGGCA
ACGTGTGGGTGCTGCTCGACGGCTGGATCTCCGTCTGCTTCCTGGCCGCGGACGAGGCCGCCCGCCTCCTCCGGTCGGCT
ACCGATTGATCATTGATGATCAGGATAACCAGAGG---------------------------------------------
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---------------------------------------------TACATTATTTGTTGCGTGCATAGATTGATCCTTTC
TTCTTCAAGCAATGTTTGTTGCCTCTTTTCATGCATTCCTAAA-----GCCATGCCCAAAGATTGCCCTCACTTTTAAGT
GGATTCTCACCTG-TTTGAACAGGTTTCTTCCATATCATAAAAGTGAGTT-GGCACCCGAAAATACGGAGGCTAATGAGT
GTTTAGCTTT----ACACTTCCTCCGTAAGCTACACCAAAAAACGTCTTATATTTGTGACGGAGGGAGTATTTATCAAGT
AGGACGCAGAGTTTCTGAGCCCGAGCTCAAATGAGCTCGGGTGAACAGTAAAATGAAAAAAA----CTGATTTTTTTTAT
GACAAACATTGACAAAAGTTTCAACTGCTTGCAAAAAATCGTCATGGAATCACATTCCTAGAAGGCGCGGCAAAAAAACA
AAATCGGTACTATGAAAATGCTAGTTTCAAAAGCATTTGGGAGCACTGAATTTTT---TTGCCACGCCTTACTGGAATGT
---TCCATGACGATTTGTTTCAAGCATATGAAACTTTTGCCAATGTTTGTCACAAAAAAAAT-CAGTTTTTTAATATATA
TTTTTAC------TGTTCATCGAGCTCATTTGAGCTTGGGAGCAGAAGGACACTTTCGTATCAAGTACTCATATCTAGGA
CTGCCATTACATCATGATAAACTAAAAAGAGATCTTTGGCCAATGGTAGATAAGATGCTAGCTTGAACAACTAGGCGGGG
AGGAAAACTCCATTCCTATGAAGGGAAGTTAATGTTGATAAGATCCTACTTGGCCAACATTCTCATTTACATGTTGTCAT
TTTTTTAAATTCCCAAAATGGACCATTCAACTAGTTTATGCACACATGGCTAACTACGTGTGGAGTGATGCTGAAGAAAC
CACAAAATCCACTTGTCAAATTGGCCATATATGTGCATAAGAAAGAATACGAAGGTTTATGTGTACCAAACTTGCAAAAC
CTGAATT
>chr5D_645
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----CACCACCCCACGTTGTCATAATCGAGGTCGATCCTCCACCTCACAGATCGTTCCGACCTGCCGCAGCCGCTGCGGC
CATTGATGCGCAAAATTATCTCTTCCTCCCAACTAAACAGGTCAATTATTTGCTTGTGGGTCGCCGGCCTGAGCTGGTAT
CATATGAGTTAGTTGTGTGAATCATTGTACGCCTCCATAAGCCATCTGTCCACGACAACTCTCCATGCCTACCTTCTCGT
CACCTTCCTCAGATAGCAGCTGCAAGCAAACAATGCGAATATATACATGTACTTCGCGTATTCGTGTGGTGGTTTATCTG
CGCCTACGCGCGAGGGAGAGTAGAAGCTCCGACCTTGCCAATGGCAATGCCGTGGGAGATGGTGGTGTGCATAGCGGGCA
ACGTGTGGGTGCTGCTCGCCGGCTGGATCTCCGTCTGCTTCCTGGCCGCGGACGAGGCCGCCCGCCTCCTCCGGTCGGCT
ACCGATTGATCATTGATGATCAGGATAACCAGAGG---------------------------------------------
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---------------------------------------------TACATTATTTGTTGCGTGCATAGATTGATCATTTC
TTCTTCAAGCAATGTTTGTTGCCTCTTTTTATGCATTCCTAAAGCCATGCC-----CAAAGACTGCCCTCACTTTTAAGT
GGATTCTCACCTG-TTTGAACAAGTTTCTTCCATATCATAAAAGTGAGTT-GGTGCCCGAAAATACGGAGGTTAATGAGT
GTTTAGCTTTCTAGACACTTCCTCCCTAAGCTACACCCAAAAACGTCTTATATTTATCACGGAGGGAGTATTTATCAAGT
AGGATGCAGAGTTTCTGAATCCGAGCTCAAATGAGCTCGGGTGAACAGTAAAAAAATAAAAAAAATCTGATTTTTTA---
---------TGACAAAAGTTTCAAGTGCTTGCAAAAATTCGTCACAGAATGACATTCCTAGAAGGCGC--------AAAA
AAATCGGTATTATGATAATGCTACTTTC-AAAGCATTTGGGAGCACTGAATTTTTCTTTTGCCACGCCTTACAGGAATGT
---TCCAAGACGATTTTTTTCAAGCACTTGAAACTTTTGCCAATGCTTGTCACAAAAAAATCAGATT-------------
TTTTTAA------TGTTCACCGAGCTCATTTGAGCTTGGGAGCAGAAGGACACTTTCGTATCAAGTACTCATATCTAGGA
CTGCCGTTACACCATGATAAACTAAAAAGAGATCTTTGGCCAATGGTAGATAAGATGCTAGCTTGAACAACTAGGTGGGG
AGGAAAACTCCATTCCTATGAAGGGAAGTTAATGTTGATAAGATCCTACTTGGCCGACATTCTCATTTACATGTTGTCCT
TTTTA-AAATTACCAAAATGGACCATTCAACTAGTTTATGCACACATGGCTAACTACGTGTGGAGTGATGCTGAAGAAAC
CACAAAATCCACTTGTCAAATTGGCCATATATGTGCATAAGAAAGAATACGAAGGTTTATGTGTACCAAACTTGCAAAAC
CTGAATT
>chr5A_645
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----CACCACCCCACGTTGTCATAATCGAGATCGATCCTCCACCTCACAGATCGTTCCGACCTGCCGCAGCCGCTGCGGC
CATTGATGCGCAAAATTATCTCTTCCTCCCAACTAAACAGGTCAATTATTTGCTCGTGGGTCGCCGACCTGAGCTGGTAC
CATATGAGTTAGTTGTGTGAATCATTGTACGCCTCCACAAGCCATCTGTCCACGACAACTCTCCTTGCCTACCTTCTCGT
CACCTTCTTCAATTAGCAGCCGCGAGCAAGCAATG--AATACATACATGCACTTGGTGTGTTCGTGAGCTGGTTTATCTG
CGCCTGCGCGCGAGGGAGAGTAGAAGCTCCGACCTTGCCAATGGCAATGCCTTGGGAGATGGTGGTGTGCATAGCGGGCA
ACGTGTGGGTGCTGCTCGACGGCTGGATCTCCGTCTGCTTCCTGGCCGCGGACGAGGCCGCCCGCCTCCTCCGGTCGGCT
ACCGATTGATCATTGATGATCAGGATAACCAGAGGTACATTATTGGGACATTTACATCTATGCCCTTAACTCGAACCCAC
TACTCAGTTTTGCCCCTAATTTTTAGGTATGCTCAGTTTTGCCCCTCCGTCGTTAGTGTCACTTATAGAAATGCCCTTTT
GCGACATTACCGTCTGGTCAAAGAACTTTGACCACCCAGAAAAAATAGCAAAAAAAATCAAAAAATCTGAATTTTTGTGG
GATCGAAGATAGTCATGTCCGCAAGGCGTGTGCAAATTTCTGTGCCGTTCGGACACCCTGAGAGCTCGTGGCAAAGGAAA
TCATAAATTTTGTACGCATGTGAACAGTAAATTCAAAAAAATAGAAAAAAATTCAAAAAAATATGAAATTTTGGAGAACT
GAAGATACTTAGGTGCACAAGATGTGTGCACATTTTTGTTGTGTTTGGACATCGTAGGAGCTCTCGGAGAAAAAAATAAA
GTTTAGCTCCTACGAGCTCGTACGGGCTCATACGATGTCCAAACACAACAAAAATGTGCACATATCTTGTGCACCTAAGT
ATCTTCAGTTCCCCAAAATTTCATATTTTTTTGAATTTTTTTTCTATTTTTTCGAATTTACTGTTCACATGCGTACAAAA
TTTATGATTTCCTTTGCCACGAGCTCTCAGGGTGTCCGAACGGCACACAAATTTGCACGCGCCTTGCGGACATGACTATC
TTCGATCCCACAAAATTTCAGATTTTTTTGATTTTTTTTGCTATTTTTTTCTGGGTGGTCAAAGTCCTTTGACCGGACGG
TAACGGCGTAAAAGGGCATTTCTATAAGTGACACTAACGGTGGAGGGGCAAAACTGAGCATACCTAAAAATTAGGGGCAA
AACTGAGTAGTGGGTTCGAGTTAGGGGCAGAACTGGAATTGGCCCTACATTATTTGTTGCGTGCATAGATTGAGCCTTTC
TTCTTCAAGCAATGTTCGTTTCCTCTTTTCGTGCATTCCTAAA-----GCC-----CAAGGACTGCACTCACTTTTAGGT
GGATTCTCACCTGTTTTGAACAGGTTTCTTCCATACCATAAAAGTGAGTTTGGTGCCTGAAAATATGGAGGCTAATGAGT
GTTTAGCTTTCTAGATACTTCCTCTCTAAGCTACACCAAAAAA-GTCTTATATTTTGTTACAGAGATAATATTATCAAGT
AGGACCCAGAGTTTCCGAGCCCAGACTCAAATGAGCTCGGATGAACAGTAAATTTAAAAAAAAATCAAAAACCTAACCAG
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------------------------------------------------------TTTTTTTTCACGCCTTCTAGGAATGT
GATTCCATGGCGAATTTTTGCAAGCACTTT-AACTTTTGTCAATGTTTGTCACAAAAAATATTCAATTTTTTCTGATTTG
TTTTTGATTTTATTGTTCACCGGGCTCATTTGAGCTCAGGAGCAGAAGGACACTT-------------TCATATCTAGGA
CTGCCGTTGCACCATGACAAACTGAAAAGAGATCTTCGGGCAATGGTAGATAAGATGCTAGCTAGAACTACTAGGTGGAG
AGGAAAACTCCATTCATATGAAGGGAAGTTAATGTTGATAAGATCCTACTTGGCCAACATTATCATTTACATGTTGTCCT
TTTTA-AAATTTCCACAATGGGCCATTCAACTAGGTTATGTACACATGGCTAACTGCATGTGGAATGATGTTGAAGAAAC
CACAAAATCCACTTGTCAAATTGGCCATATATGTGCATAAGAAAGAATAGGAAGGTTTATGTGTACCAAACTTGCAAAAC
CTGAATT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS-----------------------------S----------------------------------------------
----------------------S--------S------------------------------------------------
------------------------------------S-------------------------------------------
------------------------------------S---------------------------S---------------
----------S---------------------------S------------S----------------------------
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---------------------------------------------------SSSSS------S-----------------
-----------------------------------------------------SS-------------------------
-------------------------S-----------------------------S-S----------------------
------------------------------------------------------S---------------------SS-S
SSSSSSSSS---------------S------------S------SS----S-----------------SSSSSSSS--S-
---------S-----S-------S----S-------------------------------------------S-------
----------------S---------SS-------------------------------------S------SSS--S-S
------S------------S------------------------------------------------------------
-----S-----S---------------------------------------------------------------S----
------------------------------------------------------------------------------S-
----SS-----S--------------------------------------------------------------------
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>forward_165
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-----------------------------------------------------------------TGTGCTGCCTTCGTC
AATCT---------------------------------------------------------------------------
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>reverse_2132
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---------------------------------------------------ATGCCCAAAGATTGCCCTCA---------
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