>input_sequence_87469
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-------------------------------------------ATGAAAACAACAACTTTAGTCGCCATCTCCATATCTG
GTTTACTTGTAAGCTTTACTGGGTATGCCTTATATACCGCGTTTGGGCAACCCTCTCAACAATTTAGAGATCCATTCGAA
GAACACGGAGACTAA-----------------------------------------------------------------
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>chr3D_1_TraesCS3D01G447100
CGTACCACGAGGTGGTTGCCCTTTGGTCCATAGACGGCACCCTGGCATGTGAAGATACATGCAATGCCTCTTCTCGTTGG
TCGCTCGGAAGCTCTCTTTTGCTCTTCGACACAAGTATGGCTCAGTTATCGGTCTAGGAAGAGGCCCAAGCGCCCTTGGT
GGCCGTACATTCCTTGGTCAGTTGTGTCGGCTCGCACCATATGTACTTAGTGGGATCATTGACACGCTTTTGGGTCAGGG
TGTGCAAAATCGAACAAAAAGCCAAAAATCGAAC-AAAAAAAAACCAAACCAAAATTTTTCGTTTTCCCATGTTTGGGTT
TCAGTTTCAGTTTTGAAATCTGAAAACCATTTGTATTTCATTTTTTGGTTAGAAACCGAAAACCATTTGGTTAAACCAAA
TTAACCGAAATTGAGGTTTTTTCGGTTCAAAGCGTAATGGTTGTTGTAGTATTTTCTGGCCCATTTAGTGCTTCAGTTTA
TGTGATTAGCCTGACTGCTTATCCAACAACACTTGTTTATCCTTTTTAATTGTTTTTTCTCATTATGATTAGCCTGACTG
CGTTTTCGCTGGGATTAGTTCTTGTTTGTATATCCTTATCCTAGAAATGTAGATCTTAAACTAGAAATACTTTTTTGGAT
GGAAAAACTCTGACTTCCTAGTTTTAGTTAGTAGAAACCTAATTGGTTAAAATTTCGTCCAGTAAAACGGAAGAATTATA
AATTTCTAAAATGATAGATAGGAATATAGCGAATAAAGCCATTGCAACCCGCATAAAAG--GTAGTCCCCCAACCCGGGG
CGACTTTCCTATATTCCGAATTCAAGGGTTTCAGTAAACTACCTGCACCACTTCGTTTTGGCCTAGGTTTAGAACTATCT
TCAACTGTTTGTGTAGCCATAAATTCTATTTAATCATTGGTGTTGACTTTGTATACTATTCCGTTGTAGTTGTAAATACA
CGATCTTTTCGTAGATCCATTGTAATCTTGAAATTCTATAAAAATGAAAACAACAACTTTAGTCGCCATCTCCATATCTG
GTTTACTTGTAAGCTTTACTGGGTATGCCTTATATACCGCGTTTGGGCAACCCTCTCAACAATTTAGAGATCCATTCGAA
GAACACGGAGACTAATTTAAGTAAGAAGTCCCCTTATCTGGGAGACTTCTTACTTAAATGAAATTATTTTATTCTTTTAG
TTGGAGTTGGTTGAACCTTAGGTGGTTCTCGGAAGAAGATAGCG---AAAAAATTATCCCTAAAGTTGAAACTAAAAGGA
ACGTATTGTGACAGCCTGA-GTTTTGCCCTCTCTTATTTGCCTGATT-TTCATTTGGCTTTATTTTGAAATTTGGAGTTT
TTGAATCTTTTCATATGGACTTAAACACTTGGGTACCCTTGGCTTTCACCCAAGTGCATCATTCCCCTCTCTAATCATCA
TTCCCCTTCTGATCCACCTCAACATAATCTTGGGAATATTTTTCTTAAATGGAAAATATTCATTTTTCCTCTCTAAAACC
CTAGCTAGTTCAATGAGCTCCAAAGCAACCCTAATTTTTCTTGCCCACAAAAATCTGAGAAAATTCACAAATATTCTTTG
AACCCTAGGGCACCTTCCTGAGCAAAAATATTTCATCACTTTTTGGAATATTTTTGCTACATAAAATATTTTCTGTTTTG
GACAGAAATGGTGGTTTCTACAGCAACTACCATTTTACTTGCTCCATTGTGCCTGAATTTTCTTGTGCATCATCACCTTA
GTAGATGATGGCTAGCCTCCAAAGCATAGCCCCCAACTCCCAGCCATTTGACCTCAGTAACCTCTCAAAGTTACTGATCA
GAAACTTACCTGGCTTGTAAAATCTTCTCTACTGCATCTGGAGCCAAACCAAAGCGTGGTAATCTTCAAAACTACCACGA
ACAACAAGCCAGACATGATCTTTGGACGTTGGTCGGCCTGAGGGGAGAGTTCACATGGTGACCACACGTGTCCATGATGC
TAGCATGCGCGTCGACGCGCTCTGAGTCCCGTCGAGCGCTCTGTTCGCGCGTGCTCGCTTCCCCCGCCTGCCCAAGCGTG
CCAAACTTCACCACCATTCTCGTCTCAACGGCATTAACTCCTCC-TGGTGCTCGCCGATGC
>chr3A_31
TAGATGA------------------------------CACTCTGGCACGTGAAGATACATGCAATGCCTCTTCTCGTTGG
TCGCTCGGAAGCTCTCTTTTGCTCTTCCACACAAGTAT-GCTCAGTTATCGGTCTAGGAAGAGGCCCAACCGCCCTTGGT
GGCCGTACATTCCTTGGTCAGTTGTGCCGGCTCGCACCATATGTACTTAGTGTGATAATTGATACGCTTCTGGGTCAGAG
TGTGC-AAATCGAACAAAAAGCAAAAGTTGAACAAAAAAACAAACCAAACCGAAATTTC-CGTTTTCCCATGTTTCGGTT
TCAGTTTCAGTTTTGAAATCCAAAAACCATTTGTATTTCATTTTTCGGTTAGAAACCGAAAACCATTTGGTTAAACCGAA
TTAACTAAAATTGAGGTTTTTTGGGTTCAAAGCATAATGGTTGCTATAGTATTTTCTGGCCCATTTAGTGCTTCGGTTTA
TGTGATTAGCCTAACTGCTTATCCAACAATACTTCTTTATCCTTTTTAATTGTTTTTCCTCATTATGAT-----------
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>chr4D_596
TATCT---------------------------------------------------------------------------
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------------------------------------------AGAAATGTAGATCTTAAACTAGAAATGCTTTTTTGGAT
GGAAAAACTCTGACTTCCTAGTTTTAGTTAGTAGAAACCTAATTGGTTAAAATTCCATCCAGTAAAACGGAAGAATTATA
AATATCTAAAATGATAGATAGGAATATAGCGAATAAAGGCATTGCGATCCCCATAAAAGGAGAAGTCCCCCAACCCAGGG
CCACTTTCCCATATTCCGAATTCAAGGGTTTCAGTAAACTACCTGCACCAGTTCGTTTTGGGCTAGGTTTAGAACTATCT
TCAACGGTTTGTGTAGCCATAAATTCTATTTAATCATTGGTGTTGACTTTGTATACTATTCCGTTGTAGTTGTAAATACC
CGATATTTTCGTAGATCCATTGTAATCTTGAAATTCTATAAAAATGGAAACAGGAACTTTAGTCGCCATCTCCATATATG
GTTTACTTGTAAGCTTTACTGGGTATGCCTTATATACCGCATTTGGGCAACCCTCTCAACAATTAAGAGATCCATTCGAA
GAACACGGAGACTAATTTAAGTAAGAAGTCTCCCAGATAGGGGGACTTCTTACTTAAATGAAATTATTTTATTCTTTTAG
TTGGAGTTGGTGGAACCTTAGGTGGTTCTCGGAAGAAGATAGCG---AAAAAAATATCCCTAAAGTCGAAACTAAAAGGA
ACGTAT--------------------------------------------------------------------------
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>chr3B_596
TATCT---------------------------------------------------------------------------
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------------------------------------------AGAAATGTAGATCTTAAACTAGAAAGGCTTTTTTGGAT
GGAAAAATTCTGACTTCCTAGTTTTAGTTAGTAGAAACCTAATTGGTTAAAATTCCGTCCAGTAAAACGGAAGAATTATA
AATTTCTAAAATGATAGATAGGAATATAGCAAATAAAGTCATTGCGACCCCCATAAAAGGAGTAGTCCCCCAACCCGGGG
CGACTTTCCCATATTCCGAATTCAAGGGTTTCAGTAAACTACCTGCACCAGTTCGTTTTGGCCTAGGTTTAGAACTATCT
TCAACGGTTTGTGTAGCCATAAATTCTATTTAATCATTGGTGTTGACTTTGTATACTATTCCGTTGTAGTTGTAAATACA
CGATCTTTTCGTAGATCCATTGTAATCTTGAAATTCTATAAAAATGGAAACAGCAACTTTAGTCGCCATCTCCATATCTG
GTTTACTTGTAAGCTTTACTGGGTATGCCTTATATACCGCGTTTGGGCAACCCTCTCAACAATTAAGAGATCCATTCGAA
GAACACGGAGACTAATTTAAGTAAGAAGTCCCCCTATCTGGGAGACTTCTTACTTAAATGAAATTATTTTATTCTTTTAG
TTGGAGTTGGTGGAACCTTAGGTGGTTCTCGGAAGAAGATAGCG--AAAAAAATTATCCCTAAAGTCGAAACTAAAAGGA
ACGTAT--------------------------------------------------------------------------
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>chrUn_596
TATCT---------------------------------------------------------------------------
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------------------------------------------AGAAATGTAGATCTTAAACTAGAAAGGCTTTTTTGGAT
GGAAAAACTCTGACTTCCTAGTTTTAGTTAGTAGAAACCTAATTGGTTAAAATTCCGTCCAGTAAAACGGAAGAATTATA
AATTTCTAAAATGATAGATAGGAATATAGCGAATAAAGCCATTGCGATCCCCATAAAAGGAGTAGTCCCCCAACCCGGGG
CGACTTTCCCATATTCCGAATTCAAGGGTGTCAGTAAACTACCTGCACCAGTTCGTTTTGGCCTAGGTTTAGAACTATCT
TCAACGGTTTGTGTAGCCATAAATTCTATTTAATCATTGGTGTTGACTTTGTATACTATTCCGTTGTAGTTGTAAATACA
CGATCTTTTCGTAGATCCATTGTAATCTTGAAATTCTATAAAAATGGAAACAGCAACTTTAGTCGCCATCTCCATATCTG
GTTTACTTGTAAGCTTTACTGGGTATGCCTTATATACCGCGTTTGGGCAACCCTCTCAACAATTAAGAGATCCATTCGAA
GAACACGGAGACTAATTTAAGTAAGAAGTCTCCCAGATAGGGGGACTTCTTACTTAAATGAAATTATTTTATTCTTTTAG
TTGGAGTTGGTGGAACCTTAGGTGGTTCTCGGAAGAAGATAGCG--AAAAAAATTATCCCTAAAGT--------------
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>chr5D_596
TATCT---------------------------------------------------------------------------
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------------------------------------------AGAAATGTAGATCTTAAACTAGAAAGGCTTTTTTGGAT
GGAAAAACTCTAACTTCCTAGTTTTAGTTAGTAGAAACCTAATTGGTTAAAATTCCGTCCAGTAAAACGGAAGAATTATA
AATTTCTAAAATGATAGATAGGAATATAGCGAATAAAGCCATTGCGATCCCCATAAAAGGAGTAGTCCCCCAACCCGGGG
CGACTTTCCCATATTCCGAATTCAAGCGTTTCAGTAAACTACCTGCACCAGTTCGTTTTGGCCTAGGTTTAGAACTATCT
TCAACGGTTTGTGTAGCCATAAATTCTATTTAATCATTGGTGTTGACTCTGTATACTATTCCGTTGTAGTTGTAAATACA
CGATCTTTTCGTAGATCCATTGTAATCTTGAAATTCTATAAAAATGGAAACAACAACTTTAGTCGCCATCTCCATATCTG
GTTTACTTGTAAGCTTTACTGGGTATGCCTTATATACCGCGTTTGGGCAACCCTCTCAACAATTAAGAGATCCATTCGAA
GAACACGGAGACTAATTTAAGTAAGAAGTCTCCCAGATAGGGGGACTTCTTACTTAAATGAAATTATTTTATTCTTTTAG
TTGGAGTTGGTGGAACCTTAGGTGGTTCTCGGAAGAAGATAGAG--AAAAAAATTATCCCTAAAGTCGAAACTAAAAGGA
ACGTAT--------------------------------------------------------------------------
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>chr5D_596
TATCT---------------------------------------------------------------------------
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------------------------------------------AGAAATGTAGATCTTAAACTAGAAAGGCTTTTTTGGAT
GGAATAACTCTGACTTCCTAGTTTTAGTTAGTAGAAACATAATTGGTTAAAATTCCATCCAGTAAAACGGAAGAATTATA
AATTTCTAAAATGATAGATAGGAATATAGCGAATAAAGCCATTGCGATCCCCATAAAAGGAGTAGTCCCCCAACCCGGGG
CGACTTTCCCATATTCCGAATTCAAGGGTTTCAGTAAACTACCTGCACCAGTTCGTTTTGGCCTAGGTTTAGAACTATCT
TCAACGGTTTGTGTAGCCATAAATTCTATTTAATCATTGGTGTTGACTTTGTATACTATTCCGTTGTAGTTGTAAATACA
CGATCTTTTCGTAGATCCATTGTAATCTTGAAATTCTAAAAAAATGGAAACAACAACTTTAGTCGCCATCTCCATATCTG
GTTTACTTTTAAGCTTTACTGGGTATGCCTTATATACCGCGTTTGGGCAACCCTCTCAACAATTAAGAGTTCCATTCGAA
GAACACGGAGACTAATTTAAGTAAGAAGTCCCCTAGATAGGGGGACTACTTACTTAAATGAAATTATTTTATTCTTTTAG
TTGGAGTTGGTGGAACCTTAGGTGGTTCTCGGAAGAAGATAGCG-AAAAAAAATTATCCCTAAAGTCGAAACTAAAAGGA
ACGTAT--------------------------------------------------------------------------
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>chr5D_596
TATCT---------------------------------------------------------------------------
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------------------------------------------AGAAATGTAGATCTTAAACTAGAAAGGCTTTTTTGGAT
GGAAAAACTCTGACTTCCTAGTTTTAGTTAGTAGAAACCTAATTGGTTAAAATTCCGTCCAGTAAAACGGAAGAATGATA
AATTTCTAAAATGATAGATAGGAATATAGCGAATAAAGCCATTGCGATCCCCATAAAAGGAGTAGTCCCCCAACCCGGGG
CGACTTCCCATTATTCTGAATTCAAGGGTTTCAGTAAACTACCTGCACCAGTTCGTTTTGGCCTAGGTTTAGAACTATCT
TCAACGGTTTGTGTAGCCATAAATTCTATTTAATCATTGGTGTTGACTTTGTATACTATTCCGTTGTAGTTGTAAATACA
CGATCTTTTCGTAGATCCATTGTAATCTTGAAATTCTATAAAAATGGAAACACCAACTTTAGTCGCCATCTCCATATCTG
GTTTACTTGTAAGCTTTACTGGGTATGCCTTATATACCGCGTTTGGGCAACCCTCTCAACAATTAAGAGATCCATTCGAA
GAACACGGAGACTAATTTAAGTAAGAAGTCTCCCAGATAGGGGGACTTCTTACTTAAATGAAATTATTTTATTCTTTTAG
TTGGAGTTGGTGGAACCTTAGGTGGTTCTCGGAAGAAGATAGCG-AAAAC-AATTATCCCTAAAGTCGAAACAAAAAGGA
ATGTAT--------------------------------------------------------------------------
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>chr1D_596
TATCT---------------------------------------------------------------------------
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------------------------------------------AGAAATGTAGATCTTAAACTAGAAAGGCTTTTTTGGAT
GGAAAAACTCTGACTTCCTAGTTTTAGTTAGTAGAAACCTAATTGGTTAAAATTCCGTCCAGTAAAACGGAAGAATTATA
AATTTCTAAAATGATAGATAGGAATATAGCGAATAAAGCCATTGCGATCCCCATAAAAGGAGTAGTCCCCCAACCCGGGG
CGACTTTTCCATATTCTGAATTCAAGGGTTTCAGTAAACTACCTGCACCAGTTCGTTTTGGCCTAGGTTTAGAACTATCT
TCAATGGTTTGTGTAGCCATAAATTCTATTTAATCATTGGTGTTGACTTTGTATATTATTCCGTTGTAGTTGTAAATACA
CGATCTTTTCGTAGATCCATTGTAATCTTGAAATTCTATAAAAATGGAAACAACAACTTTAGTCGCCATCTCCATATCTG
GTTTACTTGTAAGCTTTACTGGGTATGCCTTATATACCGCGTTTGGGCAACCCTCCCAACAATTAAGAGATCCATTCGAA
GAACACGGAGACTAATTTAAGTAAGAAGTCTCCCAGATAGGGGGACTTCTTACTTAAATGAAATTATTTTATTCTTTTAG
TTGGAGTTAGTGGAACCTTAGGTGGTTCTCGGAAGAAGATAGCG-AAAAA-AATTATCCCTAAAGTCGAAACTAAAAGGA
ACGTAT--------------------------------------------------------------------------
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>chr1A_596
TATCT---------------------------------------------------------------------------
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------------------------------------------AGAAATGTAGATCTTAAACTAGAAAGGCTTTTTTGGAT
GGAAAAACTCTGACTTCCTAGTTTTAGTTAGTAGAAACCTAATTGGTTAAAATTCCGTCCAGTAAAATGGAAGAATTATA
AATTTCTAAAATGATAGATAGGAATATAGCGAATAAAGCCATTGTGATCCCCATAAAACGAGTAGTCCCCCAACCCGGGG
CGACTTTCCCATATTCCGAATTCAAGGGTTTCAGTAAACTACCTGCACTAGTTCGTTTTGGCCTAGGTTTAGAAATATCT
TCAACGGTTTGTGTAGCCATAGATTCTATTTAATCATTGGTGTTGACTTTGTATACTATTCCGTTGTAGTCGTAAAT--A
CGATCTTTTTGTAGATCCATTGTAATTTTGAAATTCTATAAAAATGGAAACAACAACTTTAGTCGCCATCTCCATATCTG
GTTTACTTGTAAGCTTTACTGGGTATGCCTTATATACCGCGTTTGGGCAACCCTCTCAACAATTAAGAGATCCATTCGAA
GAACACGGAGACTAATTTAAGTAAGAAGTATCCCAGATAGGGGGACTTCTTACTTAAGTGAAATTATTTTATTCTTTTAG
TTGGAGTTGGTGGAACCTTAGGTGGTTCTCGGAAGAAGATAGCG-AA-CA-AATTATCCGTAAAGTCGAAACTAAAAGGA
ACGTAT--------------------------------------------------------------------------
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>chrUn_616
--------------------------------------------------------------------------------
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--------------------------------------------------------TAAACTAGAAAGGCTTTTTTGGAT
GGAAAAACTCTGACTTCCTAGTTTTAGTTAGTAGAAACCTAATTGGTTAAAATTCCGTCCAGTAAAACGGAAGAATTATA
AATTTCTAAAATGATAGATAGGAATATAGCGAATAAAGCCATTGCGACCCCCATAAAAGGAGTAGTCCCCCAACCCGGGG
CGACTTTCCCATATTCCGAATTCAAGGGTTTCAGTAAACTACCTGCACCAGTTCGTTTTGGCCTAGGTTTAGAACTATCT
TCAACGGTTTGTGTAGCCATAAATTCTATTTAATCATTGGTGTTGACTTTGTATACTATTCCGTTGTAGTTGTAAATACA
CGATCTTTTCGTAGATCCATTGTAATCTTGAAATTCTATAAAAATGGAAACAGCAACTTTAGTCGCCATCTCCCTATCTG
GTTTACTTGTAAGCTTTACTGGGTATGCCTTATATACCGCGTTTGGGCAACCCTCTCAACAATTAAGAGATCCATTCGAA
GAACACGGAGACTAATTTAAGTAAGAAGTCCCCCTATCTGGGAGACTTCTTACTTAAATGAAATTATTTTATTCTTTTAG
TTGGAGTTGGTGGAACCTTAGGTGGTTCTCGGAAGAAGATAGCGAAA-AA-AATTATCCCTAAAGTCGAAACTAAAAGGA
ACGTAT--------------------------------------------------------------------------
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>chr7D_1280
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-----TTGTGACAGCCTGA-TTTTTGCCCTCTCTTATTTGCCTGATT-TTCATTTGGCTTTATTTTAAAATTTGGAGTTT
TTGAATCTTTTCATATGGACTTAAACACTTGGGTACCCTTGGCTTTCACCCAAGTGCATCATTCCCCTCTCTAATCATCA
TTCCCCTTCTGATCCACCTCAAAATAATCTTGGGAATATTTTTCTTAAATGAAAAATATTCATTTTTCCTCTCTAAAACC
CTAGCTAGTTCAATGAGCTCCAAAGCAACCCTAATTTTTCTTGCCCACAAAAATCTGAGAAAATTCAAAAATATTCTTTG
AACCCTAGGGCACCTTCCTGAGCAAAAATATTTCATCACTTTTTGGAATATTTTTGCTACAGAAAATATTTTCTGTTCTG
GACAGAAATGGTGGTTTCTACAGCAACTACCATTTTACTTGCTCCATTGTGCCTGAATTTTCTTGTGCATCATCACCTTA
GTAGATGATGGCTAGCCTCCAAAGCACAGCCCCCAACTCCCAGCCATTTGACCTCAGTAACCTCTCAAAGTTACTGATCA
GAAACTTACCTGGCTTGTAAAATCTTCTCTACTGCATCTGGAGCCAAACCAAAGCGTGGTAATCTTCAAAACTACCACGA
ACAACAAGCCAGACATGATCTTTGGACGTTGGTCGGCCTGAGGGGAGAGTTCACGCGGTGACCACGCGTGTCCATGATGC
CAGCATGCGTGTCGACGCGCTCTGAGTCCTGCCGAGCGCTCTGTTCGCGCGTGCTCGCTTCCCCCGCCTGCCAGAGCGTG
CCAAACTTCGCCACCATCCTCGTCTCAACGCCATTAACTCCCCC-TGGCACTCGCCGA---
>chr7D_1280
--------------------------------------------------------------------------------
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-----TTGTGACAGCCTGA-TTTTTGCCCTCTCTTGTTTGCCTGATT-TTCATTTGGCTTTATTTTGGAATTTGGAGTTT
TTGAATCTTTTCATATGGACTTAAACACTTGGGTACCCTTGGCTTTCACCCAAGTGCATCATTCCCCTCTCTAATCATCA
TTCCCCTTCTGATCCACCTCAAAATAATCTTGGGAATATTTTTCTTAAATGAAAAATATTCATTTTTCCTCTCTAAAACC
CTAGCTAGTTCAATGAGCTCCAAAGCAACCCTAATTTTTCTTGCCCACAAAAATCTGAGAAAATTCACAAATATTCTTTG
AACCCTAGGGCACCTTCCTGAGCAAAAATATTACATCACTTTTTGGAATATTTTTGCTACAGAAAATATTTTCTGTTCTG
GATAGAAATGGTGGTTTCTACAGCAACTACCATTTTACTTGCTCCATTGTGCCTGAACTTTCTTGTGCATCATCACCTTA
GTAGATGATGGCTAGCCTCCAAAGCAAAGCCCCCAACTCCCAGCCATTTGACCTCAGTAACCTCTCAAAGTAACTGATCA
GAAACTTACCTGGCTTGTAAAATCTTCTCTACTGCATCTGGAGCCAAACCAAAGCGTGGTAATCTTCAAAACCACCACGA
ACAACAAGCCAGACATGATCTTTGGACGTTGGTCGGCCTGAGGGGAGAGTTCACACGGTGACCACGCGTGTCCATGATGC
CAGCATGCGTGTCGACGCGCTCTGAGTCCCGCCGAGCGCTCTGTTCGCGCGTGCTCGCTTCCCCCGCCTGCCCGAGCGTG
CCAAACTTCGCCACCATCCTCATCTCAACGCCATTAACTCCCCCCTGGCGCTCGCCGACGC
>chr7D_1280
--------------------------------------------------------------------------------
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-----TTGTGACAACCTGA-TTTTTGCCCTCTCTTATTTGCCTGATT-TTCATTTCGCTTTATTTTGAAATTTGGAGTTT
TTGAATCTTTTCATATGGACTTAAACACTTGGGTACCCTTGGCTTTCACCCAAGTGCATCATTCCCCTCTCTAATCATCA
TTCCCCTTCTGATCCACCTCAAAATAATCTTGGGAATATTTTTCTTAAATGAAAAATATTCATTTTTCCTCTCTAAAACC
ATAGCTAGTTCCATGAGCTCCAAAGCAACCCTAATTTTTCTTGCCCACAAAAATCTGAGAAAATTCACAAATATTCTTTG
AACCCTAGGGCACCTTCCTGAGCAAAAATATTTCATCACTTTTTGGAATATTTTTGCTATAGAAAATATTTTCTGTTCTG
GACAGAAATGGTGGTTTCTATAACAACTACCATTTTACTTGCTCCATTGTGCCTGAATTTTCTTGTGCATCATCACCATA
GTAGATGATGGCTAGCCTCCAAAGCACAGTCCCCAACTCCCAGCCATTTGACCTCAGTAACCTCTCAAAGTTACTGAGCA
GAAACTTACCTGGCTTGTAAAATATTCTCTACTGCATCTGGAGCCAAACCAAAGCGTGGTAATCTTCAAAACTACCACGA
ACAACAAGCCAGACATGATCTTTGGACGTTGGTCGGCCTGAGGGGAGAGTTCACGTGGTGACCACGCGTGTCCATGATGC
CAGCATGCGTGTCGACGCGCTCTGAGTCCCGCCGAGCGCTCTGTTCGCGCGTGCTCGCTTCCCCCGCCTGCCCGAGCATG
CCAAACTTCGCCACCATCCTTGTCTCAACGCCATTAACTCCCCCATGGCACTCGCCGACGC
>chr7D_1280
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----TTGTGACAGCCTGATTTTTTGCCCTCTCTTATTTGCCTGATT-TTCATCTGGCTTTATTTTGAAATTTGGAGTTT
TTGAATCTTTTCATATGGACTTAAACACTTGGGTACCCTTGGCTTTCACCCAAGTGCATCATTCCCCTCTCTAATCATCA
TTCCCCTTCTGATCCACCTCAAAATAATCTTGGGAATATTTTTCTTAAATGAAAAATATTCATTTTTCCTCTCTAAAACC
CTAGCTAGTTCATTGAGCTCCAAAGCAACCCTAATTTTTCTTGCCCACAAAAATATGAGAAAATTCACAAATATTCTTTG
AACCCTAGGGCACCTTCCTGAGCAAAAATATTTCATCACTTTTTGGAATATTTTTGCTATAGAAAATATTTTCTGTTCTG
GACAGAAATGGTGGTTTCTACAGCAACTACCATTTTACTTGCTCCATTGTGCCTGAATTTTCTTGTGCATCATCACCTTA
GTAGATGATGGCTAGCCTCCAAAGCACAGCCCCCAACTCCCAGCCATTTGACCTCAGTAACCTCTCAAAGTTACTGATCA
GAAACTTACCTGGCTTGTAAAATCTTCTCTACTGCATCTGGAGCCAAACCAAAGCGTGGTAATATTCAAAACTACCACGA
ACAACAAGCCAGACATGATCTTTGGACGTTGGTCGGCCTGAGGGAAGAGTTCACGCGGTGACCACGCGTGTCCATGATGC
CGGCATGCGTGTCAACGCGCTCTGGGTGCCGCCGAGCGCTCTGTTCGCGCGTGCTCGCTTCCCCCGTCCGCCCGAGCGTG
CCAAACTTCGCCACCATCCTCGTCTCAACGCCATTAACTCCCCCCTGGCACTCGCCGACGC
>chr4D_1280
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----TTGTGACAGCCTGA-TTTTTGCCCTCTCTTATTTGCCTGATT-TTCATTTGGCTTTATTTTGAAATTTAGAGTTT
TTGAATCTTTTCATATGGACTTAAACACTTGGGTACCCTTGGCTTTCACCCAAGTGCATCATTCCCCTCTCTAATCATCA
TCCCCCTTCTGATCCACCTCAAAATAATCTTGGGAGTATTTTTCTAAAATGAAATATATTCA-TTTTCCTCTCTAAAACC
CTAGCTAGTTCAATGAGCTCCAAAGCAACCCTATTTTTTCTTACCCACAAAAATCTGAGAAAATTCACAAATATTCTTTG
AACCCTAGGGCACCTTCCTGAGCAAAAATATTTCATCACTTTTTGGAATATTTTTGCTACAGAAAATATTTTCTGTTCTG
GACAGAAATGGTGGTTTCTACAGCAACTACCATTTTACTTGCTCCATTGTGCCTGAGTTTTCTTGTGCATCATCACCTTA
GTAGATGATGGCTAGCCTCCAAAGCACAGCCCCGAACTCCCAGCCATTTGACCTCAGTAACCTCTCAAAGTTACTGATCA
GAAACTTACCTGGCTTGTAAAATCTTCTCTACTGCATCTGGAGCCAAACCGAAGCGTGGTAATCTTCAAAACTACCACGA
ACAACAAGCCAGACATGATCTTTGGATGTTGGTCGGCCTGAGGGGAGAGTTCACGCGGTGACCACGCGTGTCCATGATGC
CAGCAAGCGTGTCGACGCGCTCTGAGTCCCGCCGAGCGTTCTGTTCGCGCGTGCTCGCTTCCCCCGCCTGCCCGAGCGTG
CCAAACTTCGCCACCATCCTCGTCTCAACGCCATTAACTCCCCC-TAGCGCTCGCCGATGC
>chr7D_1281
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------TGTGACAGCCTGA-TTTTTGCCCTCTCTTATTTGCCTGATT-TTCATTTGGCTTTATTTTGAAATTTTGAGTTT
TTGAATCTTTTCATATGGACTTAAACACTTGGGTACCCTTGGCTTTCACCCAAGTGCATCATTCCCCTCTCAAATCATCA
TTCCCCTTCTAATCCACCTCAAAATAATCTTGGGAATATTTTTCTTAAATGAAAAATATTCATTTTTCCTCTCTAAAACC
CTAGCTAGTTCACTGAGCTCCAAAGCAACCCTAATTTTTCTTGCCCACAAAAATCTGAGAAAATTCACAAATATTCTTTG
AACCCTAGGGCACCTTCCTGAGCAAAAATATTTCATCACTTTTTGGAATATTTTTGCTACAGAAAATATTTTCTGCTCTG
GACAGAAATGGTGGTTTCTACAGCAACTACCATTTTACTTGCTCCATTGTGCCTGAGTTTTCTTGTGCATCATCACCTTA
GTAGATGATGGCTAGCCTCCAAAGCACAGCCCCCAACTCCCAGCCATTTGACCTCAGTAACCTCTCAAAGTTACTGATCA
GAAACTTACCTGGCTTGTAAAATTTTCTCTACTGCATCTGGAGCCAAACCAAAGCGTGGTAATCTTCAAAACTACCACGA
ACAACAAGCCAGACATGATCTTTGGACGTTGGTCGGCCTGAGGGGAGAGTTCACGCGATGACCACGCGTGTCCACGATGC
CAGCATACATGTCGACGCGCTCTGAGTCCCGCCGAGCGCTCTGTTCGCGCGTGCTCGCTTCCCCCGTCTGCCCGAGCGTG
CCAAACTTCGCCACCATCCTCGTCTCAACGCCATTAACTCCCCC-TGGTGCTCGTCGATGC
>chr4D_1281
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------TGTGACAGCCTGA-TTTTTGCCCTCTCTTATTTGCCTGATTTTTCATTTGGCTTTATTTTGAAATTTGGAGTTT
TTGAATCATTTCATATGGACTTAAACACTTGGGTACCCTTGGCTTTCACCCAAGTGCATCATTCCCCTCTCTAATCATCA
TTCCCCTTCTGATCCACCTCAAAATAATCTTGGGAATATTTTTCTTAAATGAAAAATATTCATTTTTCCTCTCTAAAACC
-TAGCTAGTTCAATGAGCTCCAAAGCAACCCTAATTTTTCTTGCCCACAAAAATCTGAGAAAATTCACAAATATTCTTTG
AACCCTAGGGCACCTTCCTGAGCAAAAATATTTCATCACTTTTTGGAATATTTTTGCTACAGAAAATATTTTCTGTTCTG
GACAGAAATGATGGTTTCTACAGCAACTACCATTTTACTTGCTCCATTGTGCCTGAATTATCTTGTGCATCATCATCTTA
GTAGATGATGGCTAGCCTCCAAAGCACAACCCCCAACTCCCAGCCATTTGACCTCAGTAACCTTTCAAAGTTACTGATCA
GAAACTTACCTGGCTTGTAAAATCTTCTCTACTGCATCTGGAGCCAAACCAAAGCGTGGTAATCTTCAAAACTACCACGA
ACAACAAGCCAGACATGATCTTTGGACGTTGGTCAGCCTGAGGGGAGAGTTCACGCGGTGACCACGCGTGTCCATGATGC
CAGCATGCGTGTCGACGCGCTCTGAGTCCCGCCGAGCGCTCTGTTCGCGCGTGCTCGCTTCCCCCGCCTGCCCGAGCGTG
CCAAACTTCGCCACCATCCTCGTCTCAACGCCATTAACTCCCCCCTGGCGCTCGCCGATGC
>chr2D_1281
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------TGTGACAGCCTGA-TTTTTGCCCTCTCTTATTTGCCTGATT-TCCATTTGGCTTTATTTTGAAATTTGGAGTTT
TTGAATCTTTTCATATGGACTTAAACACTTGGGTACCCTTGGCTTTCACCCAAGTGCATCATTCCCCTCTCTAATCATCA
TTCCCCTTCTGATCCACCTCAAAATAATCTTGGGAATATTTTTCTTAAATGGAAAATATTCATTTTTCCTCTCTAAAACC
CTAGCTAGTTCAATGAGCTCCAAAGCAACCCTAATTTTTCTTGCCCACAAAAATCTGAGAAAATTCACAAATATTCTTTG
AACCCTAGGGCACCTTCTTGAGCAAAAATATTTCATCACTTTTTGGAATATTTTTGCTACATAAAATATTTTCTGTTCTG
GACAGAAAT-GTGGTTTCTACAGCAACTACCATTTTACTTGCTCCATTGTGCCTGAATTTTCTTGTGCATCATCACCTTA
GTAGATGATGGCTAGCCTCCAAAGCACAGCCCCCAACTCCCAGCCATTTGACCTCAGTAACCTCTCAAAGTTACTGGTCA
GAAACTTACCTGGCTTGTAAAATCTTCTCTACTACATCTGGAGCCAAACCAAAGCGTGGTAATCTTCAAAACTACCACGA
ACAACAAGCCAGACATGATCTTTGGACGTTGGTCGGCCTGAGGAGAGAGTTCACGCGGTGACCACGCGTGTCCATGATGC
CAGCATGCGTGTCGATGCGCTCTGACTCCCGCCGAGCGCTCTGTTCGCGCGTGCTCGCTTCCCCCGCCTGCCCGAGCCTG
CGAAACTTCGCCACCATCCTCGTCTCAACGCCATTAACTCTCCC-TGGCACTCGCCGA---
>chr6D_1281
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------TGTGACAGCCTGA-TTTTTGCCCTCTCTTATTTGCCTGATT-TTCATTTGGCTTTATTTTGAAATTTTGAGTTT
TTGAATCTTTTCATATGGACTTAAACACTTGGGTACCCTTGGCTTTCACCCAAGTGCATCATTCCCCTCTCTAATCATCA
TTCCCCTTCTGATCCACCTCAAAATAATCTTGGGAATATTTTTCTTAAATGAAAAATATTCATTTTTCCTCTCTAAAACC
CTAGCTAGTTCAATGAGCTCCAAAGCCACCCTAATTTTCCTTGCCCACAAAAATCTAAGAAAAATCACAAATATTCTTTG
AACCCTAGGGCACCTTCCTGAGCAAAAATATTTCATCACTTTTTGGAATATTTTTGCTACAGAAAATATTTTCTGTTCTG
-ATAAAAATGGTGGTTTCTACAGCAACTACCATTTTACTTGCTCCATTGTGCCTGAACTTTCTTGTGCATCATCACCTTA
GTAGATGATGGCTAGCCTCCAAAGCACAACCCCCAACTCCCAGCCGTTTGACCTCAGTAACCTCTCAAAGTTACTGATCA
GAAACTTACCTGGCTTGTAAAATCTTCTCTACTGCATCTGGAGCCAAACCAAAGCGTGGTAATCTTCAAAACTACCACGA
TCAACAAGCCAGACATGATCTTTGGATGTTGGTCGGCCTGAGGGGAGAGTTCACGCGGTGACCACGCGTGTCCATGATGC
CAGCATGCGTGTCGACGCGCTCTGAGTCCCGCTGAGCGCTCTGTTCGCGCGTGCTCGCTTCCCCCGTCTGCCCGAGCGTG
CCAAACTTCGCCACCATCCTCGTCTCAATGCCATTAACTCCCCCCTGGTGCTCGCCGATGC
>SNPs
SS--SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S------S--------------------------------
---------------------------S----------S------------------------------S----------
--------------------------S-------------------------S---S-----S------S--------S-
-----S----------------S---SS-SS-SS------S----------S------SS---------------S----
--------------------SS-----------------------S-------------------------------S--
-----SS---------------S----------S---------S-S----------------------------S-----
------------S----------------S----S----------------------S-----------SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------S-----------
------------------------------------------------------S-------------------------
---------------------------------------------S----S-----------------------------
---------S----------------------------------------S-----------------------------
-----S--------------------------------------------------------------------------
----------------------------------------------S---------------------------------
----------------------------------------------------------------S---------------
--------------------------------------------------------------------------------
-----------S------------------------------------------------------S-------------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
----------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
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--------------------------S-----------------------------------------------------
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-----------------------------------------------------------------S--------------
S--------S---------------------S-----------------------------------------S------
---------S-------S------------S----------S-------------------
>forward_41
---------------------TTTGGTCCATAGACGGCACC---------------------------------------
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>reverse_1986
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-----------------------------------------------------------------ACGTGTCCATGATGC
TAGCA---------------------------------------------------------------------------
-------------------------------------------------------------
