>input_sequence_87468
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---------------------------------------------------------ATGCTCATGGACAGAGCTGATAC
TTCAGGCTTTCTCGGTAGTGGCTCGCATTGCAAGAACATTGACGTGTACTTCCATTTTGTGTACACTATATACTTTCTCG
GTGGTGAAGTTGTTAAACTGGGGTTCTGA---------------------------------------------------
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>chr2D_1_TraesCS2D01G524900
CTGTTTGGCATGGATTTGGATCAAATTTGCATTCTGAGATAGGTTTGTTTCTGGGATTTTGCTGCTGGTGCTGTACACAT
GATGCTTGTCATTTTTGCCTCT-AGAGTCCACTGATT---TTTTTTTCCTGTGG--CCACTTCATTTGTATTTTTGGGTC
GAATAAATCCTAGTATGAGAAGACCGCATGTGGACATATCTACCAACTTATCACCA----TATGTATCTATATCCTAGTT
TCTCAATTCACCTATAGCATACTA----ATATAATAAATCCTTTGTTTCCCTAAGAAGTCGAAACTGTAGATGTTGTTAA
AAAAATTGTCATATGAAGTCTTCTTCCACTTGTCCCACTAA-CTGTACCAGGAAGTTTTAACATGTATGACTGCAACTCA
AATTTACAGTATAGGTAGTGAAATCAGCTGTATTGGTTTTAAAGTAGCACTGTTATATTAGCTACTAAGCACTAATTCAT
GTTCCTCTCAAGCAAACACCATGTGAACACCATAGTGCTAATTCTAATCATGATTCACCATTTCCTCATGTACAGTAATG
GACTGAAAAAACATGCACCGGCTAATCAGATATATGTTTGATGTATTTCT-TTAGCATTTCTGTGCAAGCTCATATGAAA
TGGTACTTGTTATTCTCATACTTCTGGATTTCCTTACAGGCTCTTGAATCACTTTATTGATTTCAACTGTGGTTCTTGTT
CTCTTTCAGAAACATTAAGTTGGTTGTGGATGAGTAGGCTTGATATTT-AATCTTTTGGGTTCTCCATCATATTTAAGGA
ACATTAGCTTCAGTCGGTTGTTTTCTTTTGATGAGTTCTTATCTTGTGTAGCTAAATTTTGCCTGCTACCTGACTTTCTT
GCAGATCCCAGAGGACATTTAATTGCGTGATATGAAGTCTGTTTGCGGATTCTTTTTTATGCATAAGCTGCAGTGCACAT
GATTTTTGCCCGTAGTGCTGCAACATCACCGTTTCTCGTTTGGGACCAGTAAGCCTAATGCTCATGGACAGAGCTGATAC
TTCAGGCTTTCTCGGTAGTGGCTCGCATTGCAAGAACATTGACGTGTACTTCCATTTTGTGTACACTATATACTTTCTCG
GTGGTGAAGTTGTTAAACTGGGGTTCTGATTGGTCAGCAGAAGCTATCGGCCACTGGGCAGCGCTCAAGTCATTTTCTGT
CCTAATCCTACCTT------ATATATATTATCTGGGATGGACCTTACTATGACAAATCTTTGTGTTCGTGGGAAGGAACA
CATAGCTGCTTCATTCTCTCAAGTTGAACCCGCTGCCGCAAATTGCAGGAGTGAAGCCCTAGATGTAGCATCAGTTAAAG
TTGGTTGCCTCGGGAGCTCGGAAGCAGCTGAGACTTCTAGAAAATCATTCGAGCAGAGAAGTCGAAGTTTCCCTGTTCCT
GATGATGACTGCAGGCTGGTCCTAGGACTTGGACCAATGCCAAATCTGTATTCTGCTGACAGTCAATCATCTGGTGGGAA
CAGAGTTAAATTATCTGAAACTTTGTTCACTCCACATTGTACCGCAAGTGATTCTGGATTAGTGTTGGCGGCTTCAAGAG
GCAGCTCAAGAAATTTGCAGTCCACGATAGTGCCTGGCCGCAAGGAGCATTCACATAAAAGGAAAAATGGTATTGTGTTC
CCACTTATTGATGAGGGATCAACTTCAGCCAAAAGGAGATCAGGTGATTATGAGCTGTCACCTCAGTTTGCTCCAAGATC
AGATGTTCTTTTTATTGATAGAACAACGGCAGAGCCTGATGTCCAGCAACACCTTGGAACCGGATATGAGGCCGATCGTG
ATTTATCTCTTGATCAGCACGGGGTCGAGCTTAGCCCCGAGCCTTCAGCAACAACTGGTTGTTCTTTTGCTGCAACGTCA
GACACACTAGATAGCACTGATAACGGGGAGCAGAAAAATCATCAGCGCCATCTCAAGAAGTGTAGGTTCAATGGGTGTTC
CAAGGGCGGAAGGGGTGCATCAGGACTCTGCATTTCCCATGGCGGCGGTCACCGGTGCCAGAAGCCAGGTTGCAACAAAG
GGGCCGAGAGCCGAACGGCGTACTGCAAATCTCACGGAGGAGGAAAGCGGTGCCAAGAGCTAGGCTGCACCAAAA
>chr2B_3
--GTTTGGCATGGATTTGGATCAAGTTTGCATTCTGAGATAGGTTTGTTTCTGGGATTTTGCTGCTGGTGCTGTACACAT
GATGCTTGCCATTTTTGCCTCT-AGAGTCGGCTGAAAACATTTTTTTCCTTTGG--CCCCTTCATTAGTATTTTTGGGTT
GAGTAAATCCTAGTATGAGAAGAACGCATGTGGACATAATTACCAATTTATCACCA----TATGTATCTATATCCTAGTT
TCTCAATTTAACCC-AGCATATAAATATATATAATAAATCCTTTGTTTCCCTAAGAAGTCGAAGCTCTAGATGTTGAGAA
AAGAACAATT----------TTCTTCCACTTGTCCCGCTAAACTGTGCCAGGAAGTTTTAACATGTATGACTCCAACTCA
AATTTACAGTATAGGTACTGAAATCAGCTGTATTGGTTTTAAGCAAACACCAT--------------AGCGCCAATTCAT
GTTCATGTCAAGCAAACACCATAGCGCA-----------AATTCTAATCATGATTCACCATTTCCTCATGTACATTAATG
AACAGAAAATACATGCACCGGCTGATCAGATATATGTTTGATGTATTCCTGTTAGCATTTTTGTCCAAGGTCGTATGAAC
TGGTACTTGTTAATCTCATATGTCTGGATTTCCTTGCAAGATTTTGGATCACTTTATTATTTTCACCTGTAGTTCTTGTT
CTATTTCAGAAACATTAAGTTGGTTGTGGATGAGTAGGCTTGGTACTT-AGTCTTTTGAGTTCTCCTTCATATTTAAGAA
ACATTAGCTTCTGTCAGTTGTTTTCTTTTGATCACTTCTTATTTTGTGTAGCTAAATTTTGCCTGCTACCTGACTTTCTT
GCAGATCTCAGAGGACATTTAATTGTGTGACATGAAGTCTGTTTGTGGATTCTGTTTTATGCATAGGATGCAGTGCACAT
GATTTTTGCCCGTAGTGCTGCAACATCATCGTTTCTCGTTCGGGACCAGTAAGCCTATTGCTCATGGACAGAGCTGATAC
TTCAGGCTTTCTTGGTAGTGGCTCACATTGCAAGAACATTGACGTGTGCTTCCATTTTGTGTATACTATATACTTTCTCG
GTGGTGAAGTTGTTAAACTGGGGTTTTGATTGTTCGGCAGAAGCTATTGGCCACTTGACAGCGCTCTAGTCTTTCTCTGT
CCTAATCCTACCTTATACATATATATGTGTACTGGGATGGACCTTAATATGACAAATCTTTGGCTTCATGGGAAGGAACA
TATAGCCGCTTCATTCTCTCAAGCTGAACA--------------------------------------------------
-------------GAGCTCAGAAGCAGTTGAGACTTCTAGAAAATCATTTGGGCAGAGGAGTCGAAGTTCCCCTGTTCCT
GATGATGACTGCAGGCTGGTCCTAGGACTAGGACCAATGCCAAATCTGTATTCTGCTGATAGTCAATCATCCGGTGGGAA
CAAAGTTAAATTATCTGGAATTTTGTTCACCCAACATTGTACTGCAAGTGATCCTGGGTTACAGGTGGACACTTCAAGAG
GCAGCTCAAGAAATTTACAGTCCACAACAGTGCCTGGCCGCAAGGAGCATTCACATAAAAGAAAAAATGGTATTGTATTC
CCACATATTGGCGAGGGATCAACTTCAGCCAAAAGGAAGCCAGGTGATTATGAGCTGTCACCTCTGTTTGCTCCAAGATC
AGATGGTCTTTTTATTGATAGAACAACGGCAGAGCCTGATGTCCAGCAACACCTTGGAACCGGATATGAGGCCGATCATG
ATTTATCTCTTGAGCAGCACGAGGTTGAGCTTAGCCCCGAGCCTTCAGCAACAACTGGTTGTTCTTTTGCCGCAACTTCA
GATACAGTAGATAGTACTGATAATGGGGAGCAGAAAAGTCATCAGCGCCATCTCAAGAAGTGCAGGTTCAATGGGTGTTC
CAAGGGCGGAAGGGGTGCCTCAGGGCTCTGTATTTCCCATGGCGGCGGTCACCGGTGCCAAAAGCCAGGTTGCAATAAAG
GGGCCGAGAGCCGAACTGCGTACTGCAAATCTCACGGAGGAGGAAAGCGGTGCCAGGAGCTAGGCTGCACCAAAA
>chr2A_5
----TTGGCATGGATTTGGATCAAATTTGCATTCTGATATAGGT-TGTTTCTTGGATTTGGCTGCCGGTGTTGTACACAT
GATGCTTGTCATTTTTGTCTCTTAGAGTCGGCTCATT---TTTCTTTTCATGTGGTCCCCTTCATTAGTATTTTTGTGTC
GAGTAAATCCTAGTATGAGAAGAACGCATGTGGACATAACTACCAACTTATCACCATGCATATGTATCTATATCCTAGTT
TCTCTATTTAACCC-AGCATACAA----ATATAATAAATCCTTTGTTTCCCTAAGAAGTCGAAGCTCGAGATGTTGAGAA
AAGATCAAT-----------TTCTTCCACTTGTCCCACTAAACTGTGCCAGGAAGTTTTAACATGTATGACTGCAACTCA
AATTTACAGTATAGGTAGTGAAACTAGCTGTATTGGTTTTAAAGTAGCACTAC-----TAGCTACTAAGCGCTAATTCAT
GTTCATCTCAAGCAAACACCATAGCTCA-----------AATTCTAATCATGATTCACCATTTCCTCATGTACATTAATG
AACTGAAAATACATGCACCGCCTGATCAGATATATGTTTGATGTATTCCTGTTAGCATTTTTGTCCAAGGTCATATGAAC
TGGTACTTGTTAATCTCATACTTCTGGATTTCCTTACAAGTTTTTGAATCACTTTATTATTTTCACCTGTGGTTCTTGCT
CTATTTCAGAAACATTAAGTTGGTTGTGGATGAGTAGGCTTGATACTTAAGTCTTTTGAGTTCTCCTTCATATTTAAGAA
ACATTAGCTTCTGTCAGTTGTTTTCTTTTTATCAGTTCTTATTTTGTGTAGCTAAATTTTGTCTGCTACTTGACTTTCTT
GCAGATCTCAGAGGACGTTTAATTGCATGATATGAAGTCTGTTTGTGGATTCCCTTTTATGCATAAGATGCAGTGCACAT
GATTTTTGCCCGTAGTGCTGCAACATCACGATTTCTCACTTGGGACCAGCAAGCCTAAGGCTCATGGACAGAGCTGATAC
TTCAGGCTTCATCGGTAGTGGCTCGAATTGCAAGAATATTGACGTGTACTTCCATTTTGTGTATACTATATACTTTCTTG
GTGGTGAAGTTGTTAAACTGGGGTTTTGATTATTCGGC-------------CACTGGACAGCGCTCTAGTCTTTCTCTGT
CCTAGTCCTACATTATACACATATATATTTACTGGGATGGACCTTAATATGACAAATCTTTGGCTTCATGGGAAGGAACA
TATAGCCGCTTCATTCTCTCAAGCTGAACA--------------------------------------------------
-------------GAGCTCAGAAGCAGTCGAGACTTCTAGAAAATCATTTGGGCAGAGGAGTCGAAGTTCCCCTGTTCCT
GATGATGACTGCAGGCTGGTCCTAGGACTTGGACCAATGCCAAATCTGTATTCCGCTGATAGCCAATCATCCGGTGGCAA
CAAAGTTAAATTATCTGGAATTTTGTTCACCCAACATTGTACTGCAAGTGATCCTGGGTTACTGGTGGGGACTTCAAGAG
GCAGCTCAAGAAATTTGCAGTCCACAACACTGCCTGGCCGCAAGGAGCATTCACACAAAAGAAAAAATGGTGTTGTCTTC
CCACATATTGGCGAGGGATCAACTTCAGCCAAAAGGAAGTCAGGTGATTATCAGCTATCACCTCTGTTTGCTCCAAGATC
AGATGTTCTTTTTATTGATAGAACAATGGCAGAGCCTGATGTCCAGCAACACCTTGGAACCGGATATGAGGCCGATCATG
ATTTATCTCTTGATCAGCACGGGGTTGAGCACAGCCCCGAGCCTTCTGCAACAACTGGCTGTTCTTTTGCTGCAACTTCA
GATACAATAGATAGCACTGATAATGGGGAGCAGAAAAGTCATCAGCGCCATCTCAAGAAGTGTCGGTTCAATGGGTGTTC
CAAGGGCGGAAGGGGTGCATCAGGACTCTGCATTTCCCATGGCGGCGGTCACCGGTGCCAAAAGCCAGGTTGCAATAAAG
GGGCCGAGAGCCGAACGGCGTACTGCAAATCGCACGGAGGAGGAAAGCGGTGCCAAGAGCTAGGCTGCACCAAAA
>SNPs
SS------------------------------------------------------------------------------
-----------------------------SS-------------------S-------S-------S-------------
--S--------------------S--------------S-----------------------------------------
--------S-S-SSS-------S----------------------------------------S--S---------SS--
--S--SSS-SSSSSSSSSSS--------------------------S---------------------------------
---------------------------------------------------S-SSSSS------------S---------
----S-----------------SSSSSSSSSSSSSSSSS-----------------------------------S-----
S--------S-------------S-----------------------S------------S---S----S---------S
------------S-------------------------S-S-S---------------SS-----S--------------
--S------------------------------------------S----S-------S-------S-----------S-
-----------S---S----------------S---------S-------------------------------------
-------S-------------------------------------S-------S-------------S------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
-------------------------S------S--S-----------S---------S--------S----S--S-----
-----------------------------SS---------------S---------------SS---S------------
S-----S----------------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS------S-------S---------------------S-S------S----------S----------
-----------------------------------------------------------S-----------S--------
--S--------------S--S---------S-S---------S---------S----S---S--S---S-S---------
-------------------------S-S---------------------------------S--------------S---
----S-----SS-------------------------SS-------------------------S---------------
-----------------------------------------------------------------------------S--
-------------------------S--------------------------------------------------S---
--S---S----------------S-------------S------------------------------------------
------------------------------------------------------------S--------------S----
---------------------------------------------------------------------------
>forward_512
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-----------GCAAACACCATGTGAACACCA------------------------------------------------
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>reverse_1324
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-------------------------------------------TGCAGGAGTGAAGCCCTAGA-----------------
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