>input_sequence_87434
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---------------ATGAACAAGGT---GAAGAGCCATGGCGGCAAGCACACGGGGTCAG---CAGGA---GGAGGAGG
GATCAGCAGGATGCTGAGGCAACACAAGGCCAGGCTCTACATCATCCGGCGATGCGTTGTCATGCTCCTCTGCTGCCATG
ACTGA---------------------------------------------------------------------------
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>chr3D_1_TraesCS3D01G058500
GTGCGAGAGTTGCTGCCTTCGCATGCACCGGAGACCGCAGACGTGGTTGTCCGGGGAAGATTGCGCTCCCGAGTCCTAAG
TTAGTCATCCACCTTGTAGTCATTTCCCTAGCCAGTGGTCCCTCCTTTGGCGATTAAGTCCCGCCGCTACCATCGCCGAG
CGCGAGAGCGGGCGGGGGAGGGGGGGGGAGAAAGCAAGAC---------AAAGGTGAGGTGGGAGATGTGTGAAATGAAA
CAGTAGCTTCCGATCGAGCTAGGTAACAGTTGTAACCGCGCAGCATGCGGCACACGCCCTATGCTAC-GCAGCATGACAC
ATGGGGCGAACTGGCTAGAATCACCGTTAAAATGTGCTTACTGCCTCACTAGAGTTTCTGAGAAAAATTACGTGGATGCC
GGTTATTTCTGTAGTGAAACCCAATTGTGGTGGCATTCGG-TAACCCTAAACCCTCACTAGCGGTTTAGAAAAAAAATGA
ACCCTCACTAGAATTGCCCACACGCATATTTGACCACCTTAGTTGTGCCATCACGCTGCCGAGCGCGTCGCCAGTGCGCA
ACAGTGAGAGCTTGCACCCGCACCTCCACCATTAGTCGCGTGGATTATTTTCATAAAATGTACAAGAGGAGCTGTCTACT
TGTCCTTGGTCTTGAACTGCAGTGAAGCCAACTTCCCAGTTTTCCAGGCGATTGTCCCCTAAAGTGTCATCGGAATCTGC
CGCACC--TTGAGAGAGGCTGCTGCATGTGCCTCCACACTTCCTGCTACAGG-------TGCCCCCAACATCTCGTAAGC
TTTTTATACTTGCAAGTAGGAAAAGATGTGAGGATGATGCCAGAGTAGTTTGTC---TTTTGTGCCATTTGCCATTTGGC
CATGCCGTACCCTTCCTATATAAGCATGGCAATGCCAAAGCAGAGGCAG----AGCAATCCAGTA--------TAGCAGC
AGTGGAAGAGCGGAGCAGGGAG---CCTTTCTTCC--------AGCTCAC--------CAGCTAGCTCAACCACCACCTT
CTTGTTCAGCCA-GGATGAACAAGGT---GAAGAGCCATGGCGGCAAGCACACGGGGTCAG---CAGGA---GGAGGAGG
GATCAGCAGGATGCTGAGGCAACACAAGGCCAGGCTCTACATCATCCGGCGATGCGTTGTCATGCTCCTCTGCTGCCATG
ACTGAC-------CCTACATTGGTGTCCTGTTCTTCGTTTGATCCTCTCTCGT----TTGTAGCTAGGCTAGCTAGGCTT
AGACAGATTCTCTG------------------TTGTGTGTATGTGTGCATAGGGTAGTTTATGTTTAGATAGATTTCGCT
GACGGTTAGTTCGG-ATGTTGAAGTTTTGTGTGGTGCCATGGTTATACTAAGTCCTGCAACGGCAAGGATGTGCATGTAG
TATCTGAGATGTT--TGGTCTTGCCATCTTTGTTCTGAATTTGCTCCATCAGTAATGGAAGGTTCTCAGAAAAGAGAAAA
AGAAAAAACAATTATTATGAAAGTGCTGAGCAAAAGATTA---TCTCTTGGCATCGTCCAATTGTA--------------
--------CCATAATTGTGACCTGTGAGTCTCTGATTGCTAACGCCATACATGC--------------------------
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GTCCTTTTGGGGTGTTCTTATTTCGCTCGATTAGG------------------------------TCAGTTGTTGGGACG
ATTTCACACACAAGGCCATCTCAAAGGAGTGCATTTTCGGAATGAATTTGCAAAGTTACTCAGGAAATTGGCA-------
------------CCTAATTAATATTTCAGGGAAAGGC-------------CACCATTTCAGGGCAAAATTTGAACATG-T
TTTTTTCCGCAGAAAA-TTTCTATTTCTGATGGTAACCTCACACTTAGACATTGAAAGACTCATTTTATCTTCTGCCCAG
TATGCAGACACACTGAGCGACTATCTACACACAGCTCCTTGCCATCTTTGTTC---------------------------
--------------------TGAGTTTGTCTAGGAAATAGCCAGCTTTAAATTTCTGGTAAACGGAGCAGCACTGGACCA
AAGAAACGAGAAGCTTCAAGGTACGTACGTACAGTACTTGCAGTATTGTTTGGTGAGATGTTGCTG-------GGTATAC
TCGCCTCAACTTGAAT---------------------------------CTCAAGGAGGCACTTTGGGTTTAGTGCAAGA
TGGCTCTCTTGTTCTTTA---------ATCAGCCCAGAGGCCCCGTTTAACCCGCCATTGGAGGCTGCGTAAGAAA--TG
CTTTTATCCTG----CGACCCCACTTGCCAT----GTAATTTCTTCTGGACTCAAGTC----------------------
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>chr3A_1
GTGCCAGAGTCGCCACCTCCGCATGCACCGGCCACCGTGGACGTGGTTGTGGAGGGAAGATTGCGCTCCCGAGGCCCGAG
TTAGTCATCCACCTTGTAGTCATTTCCCTAGCCACTGGTCCCTCCTTTGTCGATTGAGTCCCGCCGCTACCATCGTCGAG
CGCGAGAGCGGGTAGGGGGGGACGGGGGG--AAGCAAGAT---------AGAGGTGAGGTGGGAGACGAGTGAAATGAAA
CAGTTGCTTCCGATCGAGCTAGGTAACAGTTGTAACCGCACGGCATGCGGCACACGCCCTATGCTACTGCAGCATGGCAC
ATGGGGCGAACTGGCTCAAATCACGGTTAAAATGTGCTTACTGCCTCACTACAGTTTCTAAGAAAAATTACGTGGATGCC
GGTTATTTCTGTAGTGAAACCCAATTGTGGTGGCATTCGG-TAACCCTAAACCCTCACCAACGGTTTCG-AAAAAAATGA
ACGCTCGCTAGAATTGCCCACACGCGCATTTGACCACCTTAGTTGTGCCATCATGTTGCTGAGCGCGTCGCCGGTGCGCA
GCAGTGAGAGCTTGCGCT-------------TTAGTCGTGTGGATTATTTTCATAAACTGTACAAGTGGAGAGCTGTCTA
----------CTTGAACTGCAGTGAAGCCAACTTCCCAGTTTTCTAGGCGATTGTCCCCTAAAGTGTCATCGGAATCCGC
CGCACC--TTGAGAGAGGCTGCTGCATGTGCCTCCACACTTCCTGCTACAGGTGGTTTATGCCCCCAACATCTCATAAGC
TTTTTATACTTGCAAGTAGGAAAAGATGTGAGGATGATGTCAGAGTAGTTTGTC---TTTTG-------TGCGATTTGGC
CATGCCGTACCCTTCCTATATAAGCATGGCAACGCCAAAGCAGAGGCAG----ACCCATCCAGTATAGCACTATAGCAGC
AGTGGAAAAGCAGAGCAGGGAG---CCTTTCTTCC--------AGCTCAC--------CACCTAGCTCAATCACCACCTT
CTTGTTCAGCCAGGGATGAACAAGGT---GAAGAGCCATGGCGGCAAGCACACGGGGTCAG---CAGGA---GGAGGAGG
GATCAGCAGGATGCTGAGGCAACACAAGGCCAGGCTCTACATCATCCGGCGATGCGTCGTCATGCTCCTCTGCTACCATG
ACTGAC-------CCTACAAAGGTGTCCTGTTCTTCGTTTGGT----CCTCGT----TTGTAGCTAGGCTAGCTAGGCTT
AGACAGATTCTCTG------------------TTGTGTGTATGTGTTCGTAGGGTAGTGTATGTTTAGATAGATTTAGCT
GACGGATAGTTTGG-ATGTAGAAGTTTTGTGTGGTGCCATGGTTCTCCTAAGTCCTGCAACGGCAAGGATGTGCATGTAG
TATCTGAGATGTT--TGGTCTTGCCATCTTTGTTGTGAATTTGCTCCATCAGTAATGGAAGG-TCTCAGAAAAAAGAAAA
AGAAAAAACAATTATTATGAAAGTGCTGAGCAAAAGATTA---TCTCTTGGCATCATCCAATTGTA--------------
--------CCATAATTGTGACTTGTGAGTCTCTGATTG---------------C--------------------------
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GTCCTTTTGGGGTGTTCTTATTTGGCTCGATTAGG------------------------------TTAGTTGTTGGGACG
ATTTCACACACAAGGCCATCTCAAAGGAGTGCATTTTCGGAATGAATTTGCAAAGTTACTCAGGAAATTGGCA-------
------------CCT---TAATATTTCAGGGAAATTTTACTTTGTGAGGCCAACATTTCAGGGCAAACTTTGAACATG-T
TTTTTTCCGCAGAAAA-TTTCTATTTCTGATGGTAACCTCACACTTAGACATTGAAATACTCATTTTATCTTCTGTCCAA
TTTGCAGACACACATTGAAAGACACATATTTTTGCTCCCGCA-------------------ACTTTCTTGCAGTTGTAGT
ACATCATACGTACTTAAAAACCAGTTTGTCTAGGAGATACCCAGCTTTAAATTTCTGGTAAACGGGGCA-----------
----------------------------GTACAGTACTTGCAGTATTGTTTGGTGAGATGTTGCTGCTAACAGGGTATAC
TCGCCTCAACCTGAAT---------------------------------CTCGAGGAGGCACTTTGGGTTTAGTGCAAGA
TGGCTCTCTTGTTCTTTA---------ATCAGCCCAGAGGCCCCGTTTAACCCGCCATTTGAGGCTGCGTAAGAAAAATG
C-TTCATCCTG----CAACCCCACTTGCCAT----GTACTTTCTTCTGGACTCAAGTCCAGGTTCAGATCAACCATGTAA
ATTATGGCTTGGAACAGCTTAACTAGTGCTAATCATGGTGCTAGTTGCTATTTACTTGGACCAGTGGCTCCGAAGTCTGG
GCGGTTTGCTGCATACCACAGATGTGAAAACCGCGGCACCACTACCGCCGCAGCGGTGGGGCGTCGAGCGTCGACGCTGT
CTTTGGAACCGAATAGGAATTCAGTTTACAAAATTGACCAAGCAGAAAAATGTGAAAGCATGTCAATCTAGCGTTGTGTG
TTTTCTGGTCTCCAGAATAGACCAGTAGCACAAGTTTGTACGTGGTTAGTTAGCTTTAACAATGTCCGAGAAACTTGCAA
CAGTTTTTATTTTTAAAGAATGAAAACTCGAGATGCATGAGACCGGCTTTGAATTAACAAAGTCACTAACCAGCCAGAAA
ATTACTACATAAAAGCAAAAAAAAACATGGGGAAAGCAGGTTTCAATTAACTATGCTGCTCTGATGAACAAGTTACAATG
TGATGGTTTTCTGATATATGTATATATGTTGTGCTGTGACGAACTATTGACATATTTTTTGGATTGTTGATGTGAACAAT
TTGTGATATATATGTTGGATTGTTGTTGTGATCAATTTGTGATAAGCCCCTAGACCCTACCCCTACCCTAAAAGGCTCGT
CATCAATGATTCGGCACCATAGACCCTAAGGCCCTTTCCAGTGCTCCACGGTGTACAGGTGCTAAGGGTGCCACATAGGC
AGAAATATGATGTGGCAAAGCAATTAGAGAGGAGAGAGAGCATTATAGTGACCTCAATAAGAACCAATGCTAAGCACGTG
GACCTAGGCAAAAGACTACCAACCAATACATGAAGGAGGTTTATTATTAAACAATTAAATAGAGGAGGCTTAGCTACAAA
ATCTAAGCACCGATGCATTGAGGACATTAGTTGCTAAGCATTTTATTGCACTTAGCACCCCACTTTAGCGCCAATGCATT
GGGAGAGGCCTAACACTAACCTAAAAGCCTTGCCTTCGATGACTCGACAACCCTAGACCCTAACCTAAAAACATCACCCT
CAACAAATTGAGAACCCTGGACCCTAACCCTATCCAAAAAGTCCCGTCTTTGACGGCTCGACAACCCTAGACAAATAGAA
TCTCACATAACTACACCACTACTACCTCCGTCCGGAATTACTTGACATGAAATGGATGTATGTAAACCTAGGTCTAGATA
TACATCCATTACACGTCAAGTAATTCCGGAGGGAGAGAGTAATAAATTAGCTATAAATGGCTTACACCCACTAAAAAATC
CCTCCTTTGCAACAACGAGACATACACTACATCAGAAGTAGTGTCGAGGATGACACGGTCACCATCAAATTCATCGACAC
CGACGATCAGTTCACGGATATCTCCACCAAGGCATTTGAGCGGGTCGTCTTCAGCTGCTCCACGAGAGGATCAAGATCAT
CGAGGTGAAGTAAAGCGGCTGTAGCTGGCTTAGGGGGGAGATTTTCTGCAGCTCGTTTTGCTTGTCATTGCAGCGTTTCA
TTACTCGTGCGGATTATTTTCATACACTGTACGACAGTACAAGAGCATGTGTCTAGTTGTCCTTGGTCTCGACTCTTGAA
CTCCACCGTAACCAACTTCCCTGCTTTCTAGGCGATTGTCCCCTGGAGTGTCATCGGAATTTGCTGCACCCATTGAGAGA
GGCTGCTGCATGTGCCTCCACACTTCCTGCTACAAGGGGTTTATGCCCCCAACTCTCTTTACCCAACGTCTCCACACTTC
CTGCTGAGAAGGAAGGCTTCCTGCTACAAGGGAGCCTTCCTTCTCAGCTAGGATGAACAAGGTGAAGAGCCATGGCAGCA
AGGACAAGGGGTCAGGCGGAGGAGGGTTTTGCAGGATGCTGAGGCAGCACAAGGCCAGGCTCTACATCATCCGGCGATGC
GTTGTCATGCTCATCTGCTGCCATGACTGACCCTACATAGGTGTTGTTCTTCATTTGGTCCTCTCTTGTTTGTAGCTAGG
CTAGGCTAGGCTAGGCATGACTGTTTCTTTGGTGTGTATGTTCATAGGGCACGTAGTAAATTTGTATGTTGAAGTTTTCT
GTGGTGTGGTTCTCCAAAGTCCTGCAACGTCAAGGATGTGCATGCATTGAGATGTTAGGTCTTGGTATCTTTGTTATGAA
GTTGCTCCATCAGAAATGGAAGGTCTCAAGAAAAAGAA
>chr3B_1
GTGCCAGAGTCACCGCCTTTGCATGCATCGGCGACCGA--ACGTGGTTGTCGAGGGAAGATTGCGCTCCCGAGTCCTGAG
TTAGTCATCCACCTTGTAGTAATTTCCCTAGCCAGTGGTCCCTCCTTCGTCGATAGAGTCCTGCCGCTACCATCGCTGAG
CGTGAGAGTGGGCTGGGGATGGGGGGGGG--GGGGAGAGAAAGCAAGACAGAGATGAGGTGGGAGACGAGTGAATTGAAA
CAGTTGCTTCT-ATCGAGCTAGGTAACAGTTGTAACCATGCGGCATGCGGCACACGCCCTATGCTACGACAGCATGACAC
GTGGGGCGAACTGGCTAGAATCACGGTTAAAATGTGCTTACTGCCTCACTAGAGCTTCTGAGAAAAATTATGTGGATACC
GGTTATTTCTGTAGTGAAACCCAATTGTGGTGGCATTCGGGTAACCCTAAACCCTCACTAGCGGTTTCG-AAAAAAATGA
ACCCTCACTAGAATTGCCCACACGCGCATTTGACCACCTTAGTTGCG---------------------------------
----------------CCCGCACCTCCACCATTACTCGTGTGGATTATTTTCATAAAATGTACAAGAGGAGCTGTCTACT
TGTCCTTGGTCTTGAACTGCAGTGAAGCCAACTTCCCAGTTTTCTAGGCGATTGTCCCCTAAAGTGTCATCGGTATCCGC
CGCACC--TTGAGAGAGGCTGCTGCATGTGCCTCCACACTTCCTGCTACAGGTGGTTTATGCCCCCAACATCTCATAAGC
TTTTTATACTTGCAAGTAGGAAAAGATGTGAGGATGACGCCAGAGTAGTTTGTC---TTTTG-------TGCCATTTGGC
CATGCCGTACCCTTCCTATATAAGCATGGCAATGCTAAAGCAGAGGCAG----ACCAATCCAGTA--------TAGCAGC
AGTGGAAGAGCGGAGCAGTGAG---CCTTTCTTCC--------AGCTCAC--------CACCTAGCTCAACCATCACCTT
TTTGTTCAGCCA-GGATGAACAAGGT---GAAGAGCCATGGCGGCAAGCACACGGGGTCAG---CAGGA---GGAGGAGG
GATCAGCAGGATGCTGAGGCAACACAAGGCCAGGCTCTACATCATCCGGCGATGCGTCGTCATGCTCCTCTGCTACCATG
ACTGAC-------CCTACATTGCTGTCCTGTTCTTCGTTTGATCCTCTCTCGT----TTGTAGCTAGGCTAGCTAGGCTT
AGACAGATTCTCTG------------------TTGTGTGTATGTGTTCATAGGGTAGTGTAGGCTTAGATAGATTTCGCT
GCCGGTTAGTTAGGAATCTTGAAGTTTTGTGTGGTGATATGGTTCTCCTAAGTCCTGCAACGGCAAGGATGTGCATGTAG
TATCTGACATGTT--TGGTCTTGCCATCTTTGTTCTGAATTTGCTCCATCAGTAATGGAAGG-TCTCAGAAAAAAGGAAA
AGAAAAAGCAATTATTATGAAAGTGCCAAGCAAAAGATTT---TCTCTTGGCATCATCCAATTGTA--------------
--------C-ATAATTGTGACTTGAGAGTCTCTGATTG---------------CTAACGCA--------TA---------
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---------------------------------------------------------------------------CATGC
ATCCTTTTGGGATGTTCTTATTTCGCTCGATTATG------------------------------TCAGTTGTTGGGACG
ATTTCACACACAAGGCCATCTCAAAGGAGTGCATTTTCAGAATGAATTTGCAAAGTTACTCAGGAAATTGGCA-------
------------CCT---TAATATTTCAGGAAAAGTTTACTTTGTGAGCCAAACATTTCAGGGCAAAGTTCAAACATA-T
TTTTTTCGGCAGAAAA-TTTCTATTTCTGATGGTAACCTCACACTTGGACATTGAAAGACTCATTCTATCTTCTGCCCAA
TTTGCAGACAAACTGAGCGACTATCTACACACAGCTCCTTGCTCCCTC-----------TGACTTTCTTGCAGTATATCA
TACAGTA--GTACTTATAAACCAGTTTGTCTAGGAAATACCCAGCTTTAAATTTCTGGTAAACGGAGCAGCACTGGACCA
AAGAAACGAGAAGCTTCAAGGTACGTACGTACAGTACTTGCAGTATTGTTGGCTGAGATGTTGCTGCTAACAGGGTATAC
TCGCCTCAACCTGAAT---------------------------------CTCGAGGAGGTACTTTGGGTTTAGTGCAAGA
TGGCTCTCTTGTTCTTTA---------ATCAGCCCAAAGGCCCCGTTTAACCCGCCATTGGAGGCTGCGTAAGAAA--TG
C-TTTATCCTG----CAACCCCACTTACCATTGGAGTACTTTCTTCTGGACTCAA-------------------------
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>chr3D_589
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---------------------------------------GTGGATTATTTCGATGACTTTG-CAAGAGGATCTGCCTACT
TGTCCCTGGTCTTGAACTGCAGTGAAGCCAACTTCCCGGCTTTCTAGGCAATTGTCCCCGGGAGTGTCATCGGAATCCGC
TGCACC--TCGAGAGAGTCTGGTGCATACAACAAGGGGCATATGG------------------CCCCAACTCTT--TACC
CAACGTCTCGTCCTAGTT-GCAAAGATGTGAGGATCATGTGAGAGAGTAGCCTGTCGTTTTG-------TGCCATTTGGC
CA----------TTCCTATATAAGCATGGCAATGCCACAGCAGAGACAG----ATCCATCCATCCAG------TAGCAGC
AGTGGAAGAGCAGAGCAGGGAG---CCTTCCTTCC--------AGCTCACCACCTA--CACCTAGCTCAACCACCACCCT
ACTGCTCAGCC----ATGAACAAGGT---GAAGAGCCATGGCGGCAAGCACAAGGGGTCAGGAA---------GAGGAGG
GATCAGCAGGATGCTAAGGCAACACAAGGCCAGGCTCTACATCATCCGGCGATGCGTCGTCATGCTCCTCTGCTACCATG
ACTGAC-------CTTACATTGGTGTCCTGTTCTTCGTTTGGT----TCTCGT----TTGTAGCTAGGCTAGTTAGGCTT
AGACAGATTCTCTGG--TGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCATAGGGTAGTGTATGCTTAGATAGGTTCCGCT
CACGGTTAGTTTGG-ATGTTGAAGTTTTGTGTGGTGACATGGTTCTCCTAAGTCCTGCAACGGCAAGGATGTGCATATA-
--TCTGAGATGTT--TGGTC--------------------------------TAAAGGAATG-TCTCGGAGAAACGAAAA
AGATTTTT--TTTATTATGGAAGTGCTGAGCAAAAGATTA---TCTCTTGGCATCATCCAATTGT---------CTGTTC
TGTTGAAGC-ATAACTGTGAATTGCGAGCCTCTAACTG---------------CTAACG--------TTTAGGCCCTGTT
TGGATTAGTGTTTTCTTTAGAATACACCTGTAAAAGAAATACACGTCTCCACCGGCCGGTTTCATTTCCAGTCGGAAAAC
CCTCATGCCCAGTAAAATACACTTGTAAATCTTACACCTCTGTATTGAATTACACCTATACCAAGCGCGCCCTTATATGT
GTCCTTTCGGGGTGTTCTTATTTCGTTCGATTGGG------------------------------TCAGTTAATGGGACG
ATTTTTCATACAAGGCCATCTTAACGGAGTGCATTTTGGGACTGAATTTGCAAAGATATTCAGAAAAATTGCAGCATTGT
CCTT--GTTTTACCT---CAAAATTTCAGCGAAACTTTACTTTGTGAGTTCAACATTTCAGGGGAAACTTCAAACATA-T
TTTTTTCTGCAAAAAAGGTTCTATTTCTGATGATAACCTCACACTTAGAAATTGAAAGACTCATTTTAACTTCTGCCCAG
TTTGCAGACACACTGAGCGACTATCTACACACAACTCCTTGCTCATGGTCAAGGACTAGTGGCTTTCTGGCAGTATTATT
AT----------CATATAAATCAGTTTATCTAGGAAAT------------ATTTGTGGTAAACCGAGCAGCACTGG-GCA
CAGAAACGAGAAGCTTCAAGGTACGTACAGTCCTCGCAGAGTTGCAGCATCCATGCACTCAACAGCCTTGATGGATGCAT
--GCCTCAACCTGAAACAAAAAATGCTTATTTACACGACGCTTTGTTTACTCGAGGAGGCACTTTGGCTTTAG-GCAAGA
TGGCTCTCATGTGCATGTTCTTATAGTATTAGCCCTGAGGCCCCGTTTAACCCGCCATTGGAGGCCGTGTAAGAAA--CG
C-TTTATCCTGCAACCAACCACACCTGCCGT----ATACTTTCTTCAGGACTCAAGTC----------------------
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>chr3A_589
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---------------------------------------GTGGATTATTCCAATAACTTTG-CAAGAGGATCTGTCTACT
TGTCCCTGGTCTTGCACTGCAGTGAAGCCAACTTCCTGACTTCCTAGGCGGTTGTCCCCTGGAGTGTCATCGGAATCCGC
TGCACC--TCGAG--AGTCTGCTGCATACTACAAGGGGCATATGG------------------CCTCAACTCTCTCTACC
CAGCGTCTTTTCCTAGTAGGCAAAGATGTGAGGATCATGTGAGAGAGTAGCCTGTCATTTTG-------TACCATTTGGC
CACGACGTACCCTTCCTATATATGCATGGCAATGCCACAGCAGAGGCCGATCCATCCATCCATCCAG------TAGCAGC
AGTGGAAGAGCAGAGCGGGTAG---CCTTCCTACC--------AGCTCACCACCTAGGCACCTAGCTCAACCACCACCGT
ACTGCTCAGCC----ATGAACAAGGT---GAAGAGCAATGGCGGCAAGCACAAGGGG------TCAGGA---GGAGGAGG
GATCAGCAGGATGCTGAGGCAACACAAGGCCAGGCTCTACATCATCCGGCGATGCATCGTCATGCTCCTATGCTACCATG
ACTGAC-------CCTACATTGGTGTCCTGTCCTCCGTTTGGT----TCTCGT----TTGTAGCTAGGCTAGTTAGGCTT
AGACAGATTCTCTG------------------GTGTGTGTGTGTGTGTG------------TGTTTAGATAGACTTCGCT
GGCGTAT------G-ATGTTGAAGTTTTGTGTGGTGTCATGGTTCT-CTAAGTCCTGCAACGGCAAGGATGTGCATGTA-
--TCTGAGATGTT--TGGTC--------------------------------TAATGGAAGG-TCTCGGAAAAATGAAAA
AGAAAAAA--AATATTATGGAAGTGCTGAGCAAAAGATTA---TCTCTTGGCATCATCCAATTGT---------TTGTTC
TGTTGAAGC-ATAACTGTGAATTGTGAACCTCTAACTG---------------CTAAGG--------TTTA---------
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---------------------------------------------------------------------------TATGT
GTCCTTTTGGGGTGTTCTTATTTCGTTCGATTGGGTCATTTTTTTTTGCAGGAAATTCGATTGGGTCAGTTAATGGGACG
ATTTTGCACACAAGGCCATCTTAACGGAGTGCATTTTGGGACTGAATTTGCAAAGATATTCAGAAAAAATGCAGCATTGT
CCTT--GTTTTACCT---CAAAATTTCAGCGAAATTTTACTTTGTGAGTTCAACGTTTCAGGAGAAAATTCAAACATAAT
TTTTTTCTAAAAAAAG-GTTCTATTTCTGATGATAACCTCACACTTAGAAATTGAAAGACTCATTTTAACTTCTGCCCAG
TTTGCAGACACACTGAGAGACTATCTACACACAACACCTTGCTCATGGTCAAGGACTAGTGGCTTTCTGGCAGTATTATT
AT----------CATATAAATCAGTTTATCTAGGAAAT------------ATTTGTGGTAAACCGAGCAGCACTGG-CCA
CAGAAACGAGAAGCACTCA---------------------------------------------------ATGGATGCAT
--GCCTCAACCTGAAACAAAAA--TCTTATTTACACGACGCTTTGTTTACTCGAGGAGGCACTTTGGGTTTAGTGCAAGG
TGGCTCTCATGTGCATCTTCTTATAGTATTAGCCCTGAGGCCCCGTTTAACCCGCCATTGGAGGCCGCGTAAGAAA--CG
C-TTTATAATG----CAACCCCACTTGCCGT----GTACTTTCTTCAGGACTCAAGTC----------------------
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>chr3B_610
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------------------------------------------------------------TACAAGAGCATCTATCTAGT
TGTCCTTGGTCTTGAACTCCACCGTAACCAACTTCCCAGCTTTCCAGGCGATTGTCCCCTGGAGGGTC-----AATCCGT
TGCACCTATTGAGAGAGGCTGCTGCATGTGCCTCCACACTTCCTGCTGCAAAGGGTTTATGCCCCCCAACTCTCTCTACC
CAACGTCTCATCA-----------------------------------------------------------CGTTTGGC
TATGATGTTCCCTTCCTATATAAGCATGGCAATTCCACAGCAGAGACAG----ATCCATCCATCCAG------TAGCAGC
AGTGGAAGAGCAGAGCAAGGAG---CCTTCCTTCCT----------------------------GCTCAACCACCACCCT
CCTGCTCATCCA-GGATGAACAAGGT---GAAGAGCCATGGCAGCAAGCACAAGGGGTCAGGATCAGGA---GGAGGAGG
GATCAGCAGGATGCTGAGGCAACACAAGGCCAGGCTCTACATCATCCAGCGATGCATTGTCATGCTCCTCTGTTGCCATG
ACTGAC-------CTTA----GGTGTTATGTTCTTCGTTTGGTCCTCTCTCGT----TTGTAGCTAGGCTAGG-----CT
AGGCATGACATTTTC-----------------TTTGGTGTGTATGTTCATAGGGCACGTA--------------------
----GTAAATTTAG-ATGTTGAATTTCTCTGTGGTC---TGGTTCTCCTAAGTCCTTCAACGGCAAGGATGTGCATGCA-
--T-TGAGATGTT--AGGCCTTGATATCTTTGTTGTGAAGTTGCTCCATCAGAAATGTAAGA-TCTCAAGAAAAAGAAGG
AAACAATT--ACTACTATGGAAGTTCTCAGAAAGGGTTATATGTCTATTGGCATCATCCAATTGTA--------------
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>chr3B_612
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--------------------------------------------------------------CAAGAGGATCTGTCTACT
TGTCCCTGGTCTTGCACTGCAGTGACGCCAACCTCCCGGCTTTCTAGGCGATTGTCCCCTGGAGTGTCATCGGCATATGT
TGCACC--TCGAGAGAGTCTGCTGCATACTACAA-GGGCATATGG------------------CCCCAACTCTCTGTACC
CAACGTCTCTTCCTAGTGGGCAAAGATGTGAGGATCATGTGAGAGAGTAGTCTGTCGTATTG-------TGCCATTTGGT
CATGGCCTACCCTTCCTATAT----ATGGCAATGCCACCGCAGAGGCCG----ATCCATCCATCTAG------TAGCAGC
AGTGGAAGAGCAGATCAGGGAG---CCTTCCTTCAAA--------CTCGCCACCTAGGCACCTAGCTCAACCACCACCCT
ACTGCTCAGCC----ATGAACAAGGT---GAAGAGCCATGGCGGCAAGCACAAGGGGTCAGGAGGAGGAGGGGGAGGAGG
GATCAGCAGGATGCTGAGGCAACACAAGGACAGGCTCTACATCATCCGGCGATGCGTCGTCATGCTCCTCTGCTACCATG
ACTGAC-------CCTACATTGGT-----------------------TCTCGT----TTGTAGTTAGGCTAGTTAGGCTT
AGACCGATTCTCTGTGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCATAGGGTAGTGTATGTTTAGATAGATTTCGCT
GACGGTCAGTTTGG-ATGTTGAAGTTTTGTGTGGTGTCATGGTTCTCCTAAGTCCTGCAACGGCAAGGATGTGCAT----
---CTGAGATGTATATGGTC--------------------------------TAATGGAAGG-CCTCGGAAAAATGAAAA
AGAAAAAA--AATATTATGGAAGTGCTGAGCAAAAGATTA---TCTCTTGGCATCATCCAATTGTCCGTATTGTCTGTTC
TGTTGAAGC-ATAACTGTGAATTGTGAGCCTCTAACTG---------------CTAGCGGAGTGCACTTTA---------
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---------------------------------------------------------------------------TATGC
TTCATTTTGGGGTGTTCTTATTTTGCTTGATTGGG------------------------------TCAGTTAATGGGACA
ATTTTGCACACATGGCCATCTTAACGGAGTGCATTTTGGGACTGAATTTGCAAAGATATTCAGAAAAATTGCAGCATTGC
TCCTTCGTTTTACCT---CAAAATTTCAGCGAAATTTT----TGTGAGTTCAACGTTTCAGGGGAAAATTCAAACATA-T
TTTTTTCTGCAAAAAG-GTTCTATTTCTGATGATAACTTCACACTTAGAAATTGAAAGACTCATTTTAACTTCTGCCCAG
TTTGCAGACACACTGAGCGACTATCTACACACAACTCCTTGCTCATGGTCAAGGACTAGTGGCTTTCTGGCAGTATTATT
AT----------CATATAAATCAGTTTATCTAGGAAAT------------ATTTGTGGTAAACCGAGCAGCACTGG-CCA
CAGAAACGAGAAGCTTCAAGGTACGTACAGTCCTCGCAGAGTTGCAGCATCCATGCACTCAACAGCCTTGATGGATGCAT
--GCCTCAACCTGAAACAAAAA--GCTTATTTACACGACACTTTGTTTACTCGAGGAGGCACTTTGGGTTTAGTGCAAGA
TGGCTCTCATGTTCATGTTCTTATAGTATTAGCCCTGAGGCCCCGTTTAACCCGCCATTGGAGGCCGCATAAGAAAAATG
C-TTCATCCTG----CAACCCCACTTGCCAT----GTACTTTCTTCAGGACTCAAGTC----------------------
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>chr3D_771
TCTCGTCGGG----------------------------------------------------------------------
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TTTTTATACATGCAAGTAGGCAAAGATGTAAGGATCATGTGAGAGAGTAATCTGTCGTTTTG-------TGCCATTTGGC
CATGACGT--CCTTCCTATATGAGCATGGCAATGCCATAGCAGAGGCAG----ATCCACGTAGTA--------TAGCAGC
AGTGGATGTGCAGCGCAGGAGACCTCCTTCCTTCTCACCGCCTAGCTAGC--------TGCCTAGCTCAACCATCACCGT
CCTGCTCAGCAA-GGATGAACAAGGTTAAGAAGAGCCATGGCGGCAAGCACAAGGGGGCAGAATCGGGA---GGAGGAGG
GATCAGCAGGATGCTGAGGCGACATACGGCCAGGCTCTGCATCATCCGGCAATGCGTCGCCATGCTCCTCTGCTACCATG
ACTGACGTGTGACCCTACATGGGTGTTCTGTTATTCCTTTGTTCTACTAGTTTGTAGTTGTAGCTAGGCTAGG-----TT
TGACAGGTCCTTTG------------------GTGTGTACTTATATGTTGGATGGAG-----------------------
------------GG-CTGTTGAAGTTTTGTGTGGTT---TGGTTCTCCTAAGTCCTGCAACGGCAAGGATGTGCATGTA-
--TCTGAGATGTT--AAGCCTTGTCATCTTTGTTGTGA------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------
>SNPs
----------S--S-----------------S-----SS------------SS------------------------S--
-------------------------------------------------S-----S------------------------
-------------S--------------SSS--------S----------S---------------S-S-----------
----S------------------------------------S--------------------------------------
------------------------S-------------------------------------------------------
-------------------------------------------------------------------S-S----------
-------------------------SS--------------------------S-S---S------------S-------
S--------------S----------------------S-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
--------------------------------------------------------------SSSSSSS-----------
------------------------------------------------------S-------------------------
------------------------------------------------------------S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S--------------------------------S-S---------------------------------
--------------------------------------------------------------S----------S------
-------------------------------------------------------S------------------------
---------------------S----------------SSSSSSSSSSSSSSS---------------------------
--------------------------------------------------------------------------------
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---------------SSS-----------------SS---------------S---------------------------
--------------------------------------------------------------------------------
-S----------------------------------------SSS--S-SSSS---------------------------
---------------------S-----------------S----------------------------------------
--------------------------------------------------------------------------------
----------S-----------------------------------------S---------------------------
--------------------------------------------------------------------------------
-S--------------S---------------------S-----------------------------------------
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>forward_506
--------------------------------------------------------------------------------
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------ACTAGAATTGCCCACACGCA------------------------------------------------------
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>reverse_2036
--------------------------------------------------------------------------------
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-----------------------------------GCCACCATTTCAGGGCAAAA-------------------------
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--------------------------------------
