>input_sequence_87428
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------------------------------------------------------------------------ATGTTTTA
CCTCGTGATATCGATCCCGGCGATCCTCCTGTTGCTCGTGCTGGCGCTGGGGTGCTACATGCTCGGCCGGAACCGCGGCT
GGGCCGAGGCGGCGGCGCCGCAGCAGTTCGCGCCACCGGCACCGCCCAAGTAG---------------------------
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>chr2D_1_TraesCS2D01G377100
TACAAGGTAGTTAATCGTCGAAGGCAAAAGCACATATGTTGATGGCTTTATGGAACTCCCCCTGTATAATCTATGTTTTG
ATTAGTCTCAGCTGAGAAACTAGAAAGGAACGACTTATGTGTTGTTGTGTTTGTAGCCGTCTTTTACTGTATGTTTGCAT
TGTCCATGGTGGTTGTGGTATATTGATGTTGCTGATTCTCAGTTGACTGCCTGGAACTTCCGTAAATCTAGTCACCTCGG
TTTGCACATCCCTAAACCTAAAATTCGCAGTT-CAACTTTTAGCCTTCTCATTTTTCTTAGTTGGCTTCATACAATCCAG
TAATTATGTAAGAGGATGTCATGAACTTGGCT-TACACTGTCCATATGTATAGCCCTCTGTATTTTGGAATTTATCTTTT
CTTTTTTACCTTATATGTATTGTGTGACTTCAAGTAATTTTTTGCTGAAGCGTTTTTATTACTAGTTTTGTGTGATTTCA
TACTGGTATCATTGCCTTTGTCATCCGTGGACAAACTGACTGATGTATCCATCGCAATGCGTGAAAACGCACAAATATAC
TGTTAATAATTCGACTCATAGTTTTTCTGAATGAGAAGATGACTGGAGTCGAGCGGTTTTGGTTAGACGTCCAATCGATC
AACTTCAGCTGGTGGTTGCAACGTTGTTTTCTTTCTCCGGAGGAATCCTTCGTATCGAAGCAGCAGCAATCCTAGCCTTT
TGTACACACACTGATGAG-------------------AGTCCAGGCTTGTACGTCAGTTTGTTCTGGAGCGTCAACCTTG
GCCGCTCACGCTGAAGTAAGGCTCGGCCGTCACACGATTCCACCTGTCGGGGCACCGCTTGAAATGCTGACCTGAGCTGC
A-------CCCCCGTCGTCCCCAGGTTGAGCGCTCATCGTTTCTAGTCTAGCACGCCGTGTGCGTGACTGCTC----GTT
CGTTGCGTACTGCAGAGTTCCACTAGACAAGGAGAAGCAGCAAGAGGGCCGCTCAGTCGCTTCGGCTCAGCCATGTTTTA
CCTCGTGATATCGATCCCGGCGATCCTCCTGTTGCTCGTGCTGGCGCTGGGGTGCTACATGCTCGGCCGGAACCGCGGCT
GGGCCGAGGCGGCGGCGCCGCAGCAGTTCGCGCCACCGGCACCGCCCAAGTAGCAGCAGCAGCAGCGTGGAAATCTTCCT
CAGTAAAGTTATATGCCGGT---TTTCTT--CCCCTGCTTTGCTTCCAGCAGTACT---TTTTCTTTCATACTTTTGTCT
--TAGATGTTCTAGTATATATTTTTATCTTGCAACGAGCGTGGACAGTTCAGCCTGGATGTCCCCCTTGTAATCAGGTAA
TCAGTAAAACGGGTAAAGCGTTCTTCTTCTTAATGC-AATGTATTGCTTGC------TGCAACTTTGCAAATGAGTTTGC
TCTTCAGTCACAATAGCCGGTTGGAGAGTGGTTGCGCAGGTAGACAGTCTCAGATCGCTTACAGTTACAGGCTAAATTAT
CTGGTATGATGGCTTGGATGTTAGCCTATT--------------------------------------------------
--------CCAGTCTGCGAGGCGTTCATTTGTTTCTGTTCTGTTGCCGCTTGGTAGTGGAACCCGGCCCATTTTTGTGGA
TGGACTGGGAAAAAAAGGTGTTCATTTGTGTTACAAACGTTAGATTTACACTTCATGCTTGGTAG----------AATCT
TCAAGCTACATTACAATATGACTCGTGCTAATTGAAATCTCATCCTGTTGATCAGTAGTAAAAAAAATAGATAGTGTAGT
CAATTTTCTTGGTAAATGACGTGTAGGTTTTTGCTAGGGATTATACTGCATGAGGTTAAGAAAATATTTTTT-CCCTTAG
AATAAGCATCCAAAGACATTTCAGATTCGATCCGTGTTACGAACTAAGCATGGCTTAGATAGGTAGGCTCCTTGTGTGAA
ACCAACCCACCACTATTTTGTTA-------GGCGTGTCCGTCAACTATGAGGCGTCTATGACGACTTCAATCTTAAGATC
TGTCGGCTTAATCTCTCGGAGATGCTCATAGGAGTAGAGCATGTGCGAGTGCATTCATAGGGGTGAATGTGCGTATCAGC
GTATGTATGTGAGCGTCTGTTTTTGTGTTGTGCTTCTAAAAAAATTCACCTGTGTTGGAGGAAACAATAGTAAGGATGTG
AGCAGCCAACGCTGCAAAAAACAAAA
>chr2A_1
TACAAGGTAGTTGATCATCGAAGGCAAAAGCACATATGTTGATGGCTTTATGGAACGCCCCCCTG-TAATCTATGTTTTG
ATTAGTCTCGTCTGAGAAACTAGAAAGGAACGACTTATGCGTTGTTGTGTTTGTAGCCGTCTTTTTCTGTATGTTTGCAT
TGTCCATGGTTGCTGTGGTATATTGATGCTGCTGATTCTCAGTTGACTGCCTGGAACTTCCGTAAATCAAGTCACCTCGG
TTTGCACATCAGTAAAGCTAAAATTGCG-GTT-CAACTTTTAGTCTTCTCATTTTTCTTAGTTGGGTTCAACCTCTCCGG
TAATTATGTAAGAGGATGTCATGAACTTGGCTATACACTGCCCATATGTATAGCCCTCTGTATTTTGGAATTTAGCTAT-
-TTTTTTACCTTAT--GTATTGTG-GAATTCAAGTAATTTTTTGCTGAAGCA-TTTTATTGCTAGTTTTGCGTGATTTCA
TACTGGTATCTTTGCCTTTGTTATCCGTGGACAAACTGACTGATGTATCCATCGTGATGCATGAAAACGCACAAATTTAC
TGTTAATAATTTGACTGATAGTTTTTCTGAATGAGAAGATGACTGAAGTCGAGCGGTTTTGGTTAGACGTACGATCGATC
AACTTCTGCTGGTGGTTGCAACGTTGTTTTCTTTCTCCGGAGGAATCCTTGCTATCGAAGCACCAGTAATCCCAGCCTTT
TCTCCACACACACA----GAGTAATCCAGAGCGAGCTAGTCCAGGCTTGTACGTCAGTTTGTTCTGGAGCGTCAACCTTA
GCCGCTCACGCTGAAGCAAGGCTCGGCCGTCACACGATCCCAGCTGTCGGGGCACCGCTTGAAATGCTGACCTGAGCCTC
GTGAGCTGCCCCCGTCGTCCCCAGGTTCAGCGCCTATCGCTTCT-----AGCACGCCGTGTGCGTGCCCGTGTTAGTGTT
CGTTGCGTGGGAGTTTCTGCCATCTCTCGCTGGGTTCA-------------------------GGTTCAGCCATGTTCTA
CCTCGTGATATCGATCCCGGCGATCCTCCTGTTGCTCGTCCTGGCGCTGGGGTGCTACATGCTCGGCCGGAACCGCGGCT
GGGCCGATCGGCC-GCGCCGCAGCAGTTCGCGCCACCGGCGCCGCCCAAGTAGCAGCAGCTGCAGCGTGGAAATCTTCCT
CAGTAACGCTATATGCCGGT---TTCTTCCCCCCCTGCTTTGCTTCCAGCAGTACTGCAATTTCTTTCCTACGTTTGTCT
TCTAGATGTTCTACTATGTTC-TTAATCCTGCAAGGAGTGTTGATAGTTCAGCCTGGATGTCTCCCTTG-----------
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>chr2B_1
TACAAGGTAGTTAATCATCGAAGGCAAAAGCACATATGTTGATGGCTTTGTGGAACT-CCCCCTG-TAATCTATGTTTTG
ATTAGTCTCAACTGAGAAACTAGAAAGGAACGACTTATGCGTTGTTGTGTTTGTAGCCGTCTTTTACTGTATGTTTGCAT
TGTCCATGGTGGTTGTAATATATTGATGTTGCTGATTCTCAGTTGACTGCCTGGAACTTACGTAAATCTAGTCACCTCGG
TTTGCACATCCCTAAACCTAAAATTTGCAGTCCCAACTTTTAGTCTTGTCATTTTTCTTAGTTGGGTTCATCCTGTCCAG
TAATTATGTAAGAGGATGTCATGAACTTGGCTATGCACTGT-CATATGTATAGCCCTCTGTATTTTGGAATTTAGCAAT-
-TTT-TTACCTTAC--GTATTGTG-GACTTCAAGTAATTTTTTGCTGAAGCGTTTTTATTACTAGTTTTGCGTGATTTCA
TACTGGTATCTTTA-------------------------------------------------AAAATGCACAAATTTAC
TGCTAATAGTTCGATTGATGGTTTTTCTGATTGAGAAGATGACTGAAGTCGAGCGGTTTTGGTTAGACGTCCAATCGATC
AACTTCAGCTGGTGGTTGCAACGTTGTTTTCTTTCTCCGGAGGAATCCTTCCTATCGAAGCAGCAGTAATCCTAGCCTTT
TCTGCACACACACACATCGAGTAATCCAGAGCGAGCTAGTCCAGGCTTGTACGTCAGTTTGTTCTGGAGCGTCAACCTTG
GCCGCTCACGCTGAAGTAAGGCTCGGCTGTCACACGGTTCCACCTGTCGGGGCACCGCTTGAAATGCTGACCTGAGCTGC
A-------CCCCCGTCGTCCCCAGGTTGAGCGCTCATCGTTTCT-----AGCACGCCGTGTGCGTGACTGTTC----GTT
CTTTGCGT------------------ACAAGGAGAGGCAGCAAGAGGG--------TCGCTTCGGTCCAGCCATGTTTTA
CCTCGTGATATCGATCCCGGCGATCCTCCTGTTGCTCGTCCTGGCGCTGGGGTGCTACATGCTCGGCCGGAACCGCGGCT
GGGCCGAGGCGGCCGCACCGCAGCAGTTCGCGCCACCGGCGCCGCCCAAGTAGCAGC------AGCGAGGAAATCTTCGT
CAGTAACGCTATATGTATGCCGGTTTATT--CCCCTGGTTTGCTTTCAGCACTGCTGTATTTTCTTTCTTACTTTTGTCT
--TAGATGTTCTAGTGTGTTC-TTTATCTTGCAACGAGTGGCAATAGTCCAGCCAGGATGTTTCCCCT--------GTAA
TCAGTAAAATGGGTGAAGTGCTCTTCTTCTTGATGCAAATGTATTGCTTGACCTTGATGCAACTTCGGAAATGCGTTTGC
TCTTCCGTCACAATAGCC-----------GGTTGCCCAAGTCGACAGTCTCAGATCGCTTACAGTTACAAGCTAAATTAT
CTGGTATGATGGCTTGGATGTTAGCCTATTCCAATCTGCAAGACGTTCATTTGTTTCTGTTTTGTTATGGCTTGGATGTT
AGCCTATTCCAATCTGCAAGACGTTCATTTGTTTCTGTTTTGTTATGGCTTGGTAGTGCAACCCGGTCCATTTTTGGTGA
TCAAATGG--AAAAAATGTGTTCATTTGTGTTAGGAATGTTAGATTTACACTTCATGCTTGGTATTGGTAGAGTCAATGT
TCAAGCTACATTACAACATGACTCGTGCTCACTGAAATCTCATCATGTGGATCAGTAGTAAAAAAATAC-ATAGTATAGT
CAATTTTCTTGGTAAATGACGTGTAGGTTTTT-CTAGGGATTGTACTGCATGAGATTAAGAAAATGTTTTTTCCCCTTAG
AATAAGCATCCAAGGACATTTCAGATTTGATCTGTGTTGTGAACTAAGCATGGCTTAGATAGCTAGATTCCTTGTGTGAA
AGCAACCCACCACTATTCTGTCAGTGGTATGGCATGTTCCTCAACTATGAGGCGTTG----CGACTTTAATCTTAAGATC
CGTCGGCTCAATCTCTCGAAGATGCTCATACGAGTAGAGCATGTGCAAGTGCATTCATAGGGATGAATGTGCGTATGTA-
-----TATGTGAGCGTTAGTTTTTGTGTTGTGTTTCTAAAAAAAATCACCTGTGCTG-AGGAAACAATAGTAAGGATGTG
AGCAGCCAACGCTGCAAAAAACAAAA
>SNPs
----------------S---------------------------------------------SSSS--------------
----------S----------------------------S----------------------------------------
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-------------------------S-----------------S---------------------S-----S-SS-----
--------------------------------------------------------------------------S--S-S
S-------------SS--------S---------------------------------------------S---------
----------S----------S--------------------------------SS----S---------------S---
----------------S----------------------------S----------------------------------
---------------------------------------------------S--------------S-------------
-S-S-------SS-SSSS--------------------------------------------------------------
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--------------------------------------------SSSSS---------------------S---------
--------SSSSSSSSS-S---SSSS---------S------------SSSSSSSS---------S--------------
---------------------------------------S----------------------------------------
-------------S--------------------------S-------------------S-------------------
------S-S-----------------S-----------------------------------------S-----------
-----------------S-SSS----------------S--S--S-----------------S------SSSSSSS----
---------S----S---S-S----------S------------------S--------------S-S-----S------
-----S------------SSSSSSSSSSS------S--S--S---------------------------S----------
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-----------S-----S--S------------------S----SSS-----------S-------S---------SS--
-SS-S---SS------S----------------SS--S--------------------------S-------------S-
----------------S------------S-S------------S---S-----------------SSSS-----S----
--------------------------------S---------S-----------S----------S--------------
-------------S-------------S----S-----SS----------------------S---SS------------
-S---------------S---S-----------S---S-S---------------SSSSSS------S------------
S-------S---------S-----------S---------------S---------------S-------------SSSS
SSSSS-----------SS--------------S-----------S---------S--S----------------------
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>forward_984
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----GCGTACTGCAGAGTTCCACT--------------------------------------------------------
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>reverse_2018
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-----------------TTGTTAGGCGTGTCCGTCAA-------------------------------------------
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