>input_sequence_87427
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------ATGTTTTACCTCGTGATATC
GATCCCGGCGATCCTCCTGTTGCTCGTCCTGGCGCTGGGGTGCTACATGCTCGGCCGGAACCGCGGCTGGGCCGAGGCGG
CCGCACCGCAGCAGTTCGCGCCACCGGCGCCGCCCAAGTAG---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------
>chr2B_1_TraesCS2B01G397900
AAGCTGACCTGGCTTCTCTATGTGTTGTAGTAATCTGGAGACCATCCTACAAGGTGCGAACTACCTTCTACAAGGTAGTT
AATCATCGAAGGCAAAAGCACATATGTTGATGGCTTTGTGGAACTCCCCCTGTA--ATCTATGTTTTGATTAGTCTCAAC
TGAGAAACTAGAAAGGAACGACTTATGCGTTGTTGTGTTTGTAGCCGTCTTTTACTGTATGTTTGCATTGTCCATGGTGG
TTGTAATATATTGATGTTGCTGATTCTCAGTTGACTGCCTGGAACTTACGTAAATCTAGTCACCTCGGTTTGCACATCCC
TAAACCTAAAATTTGCAGTCCCAACTTTTAGTCTTGTCATTTTTCTTAGTTGGGTTCATCCTGTCCAGTAATTATGTAAG
AGGATGTCATGAACTTGGCTATGCACTGT-CATATGTATAGCCCTCTGTATTTTGGAATTTAGCAAT--TTT-TTACCTT
AC--GTATTGTG-GACTTCAAGTAATTTTTTGCTGAAGCGTTTTTATTACTAGTTTTGCGTGATTTCATACTGGTATCTT
TA-------------------------------------------------AAAATGCACAAATTTACTGCTAATAGTTC
GATTGATGGTTTTTCTGATTGAGAAGATGACTGAAGTCGAGCGGTTTTGGTTAGACGTCCAATCGATCAACTTCAGCTGG
TGGTTGCAACGTTGTTTTCTTTCTCCGGAGGAATCCTTCCTATCGAAGCAGCAGTAATCCTAGCCTTTTCTGCACACACA
CACATCGAGTAATCCAGAGCGAGCTAGTCCAGGCTTGTACGTCAGTTTGTTCTGGAGCGTCAACCTTGGCCGCTCACGCT
GAAGTAAGGCTCGGCTGTCACACGGTTCCACCTGTCGGGGCACCGCTTGAAATGCTGACCTGAGCTGCA-------CCCC
CGTCGTCCCCAGGTTGAGCGCTCATCGTTTCT-----AGCACGCCGTGTGCGTGACTGTTC----GTTCTTTGCGT----
--------------ACAAGGAGAGGCAGCAAGAGGG--------TCGCTTCGGTCCAGCCATGTTTTACCTCGTGATATC
GATCCCGGCGATCCTCCTGTTGCTCGTCCTGGCGCTGGGGTGCTACATGCTCGGCCGGAACCGCGGCTGGGCCGAGGCGG
CCGCACCGCAGCAGTTCGCGCCACCGGCGCCGCCCAAGTAGCAGC------AGCGAGGAAATCTTCGTCAGTAACGCTAT
ATGTATGCCGGTTTATT--CCCCTGGTTTGCTTTCAGCACTGCTGTATTTTCTTTCTTACTTTTGTCT--TAGATGTTCT
AGTGTGTTC-TTTATCTTGCAACGAGTGGCAATAGTCCAGCCAGGATGTTTCCCCT--------GTAATCAGTAAAATGG
GTGAAGTGCTCTTCTTCTTGATGCAAATGTATTGCTTGACCTTGATGCAACTTCGGAAATGCGTTTGCTCTTCCGTCACA
ATAGCC-----------GGTTGCCCAAGTCGACAGTCTCAGATCGCTTACAGTTACAAGCTAAATTATCTGGTATGATGG
CTTGGATGTTAGCCTATTCCAATCTGCAAGACGTTCATTTGTTTCTGTTTTGTTATGGCTTGGATGTTAGCCTATTCCAA
TCTGCAAGACGTTCATTTGTTTCTGTTTTGTTATGGCTTGGTAGTGCAACCCGGTCCATTTTTGGTGATCAAATGG--AA
AAAATGTGTTCATTTGTGTTAGGAATGTTAGATTTACACTTCATGCTTGGTATTGGTAGAGTCAATGTTCAAGCTACATT
ACAACATGACTCGTGCTCACTGAAATCTCATCATGTGGATCAGTAGTAAAAAAATAC-ATAGTATAGTCAATTTTCTTGG
TAAATGACGTGTAGGTTTTT-CTAGGGATTGTACTGCATGAGATTAAGAAAATGTTTTTTCCCCTTAGAATAAGCATCCA
AGGACATTTCAGATTTGATCTGTGTTGTGAACTAAGCATGGCTTAGATAGCTAGATTCCTTGTGTGAAAGCAACCCACCA
CTATTCTGTCAGTGGTATGGCATGTTCCTCAACTATGAGGCGTTG----CGACTTTAATCTTAAGATCCGTCGGCTCAAT
CTCTCGAAGATGCTCATACGAGTAGAGCATGTGCAAGTGCATTCATAGGGATGAATGTGCGTATGTA------TATGTGA
GCGTTAGTTTTTGTGTTGTGTTTCTAAAAAAAATCACCTGTGCTG
>chr2D_1
AAGCTGACCTGGCTTCTCTATGTGTTGTAGTAATCTGGAGACCATCCTACAAGGTGCGAACTATCTTCTACAAGGTAGTT
AATCGTCGAAGGCAAAAGCACATATGTTGATGGCTTTATGGAACTCCCCCTGTATAATCTATGTTTTGATTAGTCTCAGC
TGAGAAACTAGAAAGGAACGACTTATGTGTTGTTGTGTTTGTAGCCGTCTTTTACTGTATGTTTGCATTGTCCATGGTGG
TTGTGGTATATTGATGTTGCTGATTCTCAGTTGACTGCCTGGAACTTCCGTAAATCTAGTCACCTCGGTTTGCACATCCC
TAAACCTAAAATTCGCAGTT-CAACTTTTAGCCTTCTCATTTTTCTTAGTTGGCTTCATACAATCCAGTAATTATGTAAG
AGGATGTCATGAACTTGGCT-TACACTGTCCATATGTATAGCCCTCTGTATTTTGGAATTTATCTTTTCTTTTTTACCTT
ATATGTATTGTGTGACTTCAAGTAATTTTTTGCTGAAGCGTTTTTATTACTAGTTTTGTGTGATTTCATACTGGTATCAT
TGCCTTTGTCATCCGTGGACAAACTGACTGATGTATCCATCGCAATGCGTGAAAACGCACAAATATACTGTTAATAATTC
GACTCATAGTTTTTCTGAATGAGAAGATGACTGGAGTCGAGCGGTTTTGGTTAGACGTCCAATCGATCAACTTCAGCTGG
TGGTTGCAACGTTGTTTTCTTTCTCCGGAGGAATCCTTCGTATCGAAGCAGCAGCAATCCTAGCCTTTTGTACACACACT
GATGAG-------------------AGTCCAGGCTTGTACGTCAGTTTGTTCTGGAGCGTCAACCTTGGCCGCTCACGCT
GAAGTAAGGCTCGGCCGTCACACGATTCCACCTGTCGGGGCACCGCTTGAAATGCTGACCTGAGCTGCA-------CCCC
CGTCGTCCCCAGGTTGAGCGCTCATCGTTTCTAGTCTAGCACGCCGTGTGCGTGACTGCTC----GTTCGTTGCGTACTG
CAGAGTTCCACTAGACAAGGAGAAGCAGCAAGAGGGCCGCTCAGTCGCTTCGGCTCAGCCATGTTTTACCTCGTGATATC
GATCCCGGCGATCCTCCTGTTGCTCGTGCTGGCGCTGGGGTGCTACATGCTCGGCCGGAACCGCGGCTGGGCCGAGGCGG
CGGCGCCGCAGCAGTTCGCGCCACCGGCACCGCCCAAGTAGCAGCAGCAGCAGCGTGGAAATCTTCCTCAGTAAAGTTAT
ATGCCGGT---TTTCTT--CCCCTGCTTTGCTTCCAGCAGTACT---TTTTCTTTCATACTTTTGTCT--TAGATGTTCT
AGTATATATTTTTATCTTGCAACGAGCGTGGACAGTTCAGCCTGGATGTCCCCCTTGTAATCAGGTAATCAGTAAAACGG
GTAAAGCGTTCTTCTTCTTAATGC-AATGTATTGCTTGC------TGCAACTTTGCAAATGAGTTTGCTCTTCAGTCACA
ATAGCCGGTTGGAGAGTGGTTGCGCAGGTAGACAGTCTCAGATCGCTTACAGTTACAGGCTAAATTATCTGGTATGATGG
CTTGGATGTTAGCCTATTCCAGTCTGCGAGGCGTTCATTTGTTTCTGTTCTGTTGCC-----------------------
-----------------------------------GCTTGGTAGTGGAACCCGGCCCATTTTTGTGGATGGACTGGGAAA
AAAAGGTGTTCATTTGTGTTACAAACGTTAGATTTACACTTCATGCTTGGTAG----------AATCTTCAAGCTACATT
ACAATATGACTCGTGCTAATTGAAATCTCATCCTGTTGATCAGTAGTAAAAAAAATAGATAGTGTAGTCAATTTTCTTGG
TAAATGACGTGTAGGTTTTTGCTAGGGATTATACTGCATGAGGTTAAGAAAATATTTTTT-CCCTTAGAATAAGCATCCA
AAGACATTTCAGATTCGATCCGTGTTACGAACTAAGCATGGCTTAGATAGGTAGGCTCCTTGTGTGAAACCAACCCACCA
CTATTTTGTTA-------GGCGTGTCCGTCAACTATGAGGCGTCTATGACGACTTCAATCTTAAGATCTGTCGGCTTAAT
CTCTCGGAGATGCTCATAGGAGTAGAGCATGTGCGAGTGCATTCATAGGGGTGAATGTGCGTATCAGCGTATGTATGTGA
GCGTCTGTTTTTGTGTTGTGCTTCTAAAAAAATTCACCTGTG---
>chr2A_1
AAGCTGACCTGGCTTCTCTATGTGTTGTAGTAATCTGGAGACCATCCTACAAGGTGCGAACTATCTTCTACAAGGTAGTT
GATCATCGAAGGCAAAAGCACATATGTTGATGGCTTTATGGAACGCCCCCCTG-TAATCTATGTTTTGATTAGTCTCGTC
TGAGAAACTAGAAAGGAACGACTTATGCGTTGTTGTGTTTGTAGCCGTCTTTTTCTGTATGTTTGCATTGTCCATGGTTG
CTGTGGTATATTGATGCTGCTGATTCTCAGTTGACTGCCTGGAACTTCCGTAAATCAAGTCACCTCGGTTTGCACATCAG
TAAAGCTAAAATTGCG-GTT-CAACTTTTAGTCTTCTCATTTTTCTTAGTTGGGTTCAACCTCTCCGGTAATTATGTAAG
AGGATGTCATGAACTTGGCTATACACTGCCCATATGTATAGCCCTCTGTATTTTGGAATTTAGCTAT--TTTTTTACCTT
AT--GTATTGTG-GAATTCAAGTAATTTTTTGCTGAAGCATTTT-ATTGCTAGTTTTGCGTGATTTCATACTGGTATCTT
TGCCTTTGTTATCCGTGGACAAACTGACTGATGTATCCATCGTGATGCATGAAAACGCACAAATTTACTGTTAATAATTT
GACTGATAGTTTTTCTGAATGAGAAGATGACTGAAGTCGAGCGGTTTTGGTTAGACGTACGATCGATCAACTTCTGCTGG
TGGTTGCAACGTTGTTTTCTTTCTCCGGAGGAATCCTTGCTATCGAAGCACCAGTAATCCCAGCCTTTTCTCCACACACA
CA----GAGTAATCCAGAGCGAGCTAGTCCAGGCTTGTACGTCAGTTTGTTCTGGAGCGTCAACCTTAGCCGCTCACGCT
GAAGCAAGGCTCGGCCGTCACACGATCCCAGCTGTCGGGGCACCGCTTGAAATGCTGACCTGAGCCTCGTGAGCTGCCCC
CGTCGTCCCCAGGTTCAGCGCCTATCGCT-----TCTAGCACGCCGTGTGCGTGCCCGTGTTAGTGTTCGTTGCGTGGGA
GTTTCTGCCATCTCTCGCTGGGTTCA-------------------------GGTTCAGCCATGTTCTACCTCGTGATATC
GATCCCGGCGATCCTCCTGTTGCTCGTCCTGGCGCTGGGGTGCTACATGCTCGGCCGGAACCGCGGCTGGGCCGAT-CGG
CCGCGCCGCAGCAGTTCGCGCCACCGGCGCCGCCCAAGTAGCAGCAGCTGCAGCGTGGAAATCTTCCTCAGTAACGCTAT
ATGCCGGT---TTCTTCCCCCCCTGCTTTGCTTCCAGCAGTACTGCAATTTCTTTCCTACGTTTGTCTTCTAGATGTTCT
ACTATGTTC-TTAATCCTGCAAGGAGTGTTGATAGTTCAGCCTGGATGTCTCCCTTG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------CAACCTGTAAGACGGTGAATTGTTCCTCTTTCTTAATGCAAATG-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------
>SNPs
---------------------------------------------------------------S----------------
-------------------------------------S----------------------------------------S-
--------------------------------------------------------------------------------
----SS-----------------------------------------S--------------------------------
-------------S-----SS--------------S--------------------------S-----------------
----------------------S-----------------------------------------S---------------
-S------------------------------------------------------------------------------
-S-----------------------------------------------------S--------------S-----S---
--S----S----------S-------------------------------------------------------------
-----------------------------------------------------------------------S--------
--SSSS--------------------------------------------------------------------------
---------------S--------S-------------------------------------------------------
---------------------------------------------------------------------S----------
-----------------------S------------------------------S-------------------------
--------------------------------------------------------------------------------
----S--------------------------------------------------S----------S-------------
---SSS-SSSS---S----------S-------S-----S-S---S----------S-----------------------
---S------------------------SSS-----S-----S------S----S----------------------S--
--S---S-S----------S----S-------------SSSSSSS--------S-S-----S-----------S------
-----------------------S--S--S---------------------------S----------------------
---------------------------------------------------------SSSSS-SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S-------S---------SS---SS-S-------
----S----------------SS--S--------------------------SSSSSSSSSSS---S-------------
----S------------S-S------------S---S-----------------SSS------S----------------
------------------------------S-----------S----------S------S-------------------
-S-------------S----S-----SS----------------------S---SS-------------S----------
-----S---S-SSSSSSS---S---S-S---------------SS----------S------------S-------S---
------S-----------S---------------S---------------S-------------SSS-------------
----SS--------------S-----------S---------SSS
>forward_1030
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------TGTGCGTGACTGTTCGTTCT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------
>reverse_2149
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------CGTCGGCTCAAT
CTCTCGAA------------------------------------------------------------------------
---------------------------------------------
