>input_sequence_87411
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---------------------------------------------------------------ATGTGGAGGAAAGTAGG
GGAAATGGCCGATACTACTGGAAGAATTCCTCTTTGGCTGATAGGTACTGTAGCTAGTACTGCTGTGATTGGTTTAGTAG
GTGTTTTCTTTTATGGTTCATATTCTGGATTGGGTTCATCTCTATAG---------------------------------
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>chr3D_1_TraesCS3D01G052600
CCAAACCTATTGATCATTAACATAGATTTT-CCCAAGATTTTGGCTGCTATTCCGAATTACTCTATTATTCCGAAGCCAA
TGAAAAGTAAGTAGAACCTACAAAAATGGGGTTTTCTATTGATGCCTTGAACAACATATAGCTTACCTATAGACAAAAAA
ATAAAAA-------A--------------GTAATTCTGTTTCGGAACCAGGCAAAACCAGATTGATGTGCCATAGGAAGG
ATAGCTATACTAATTCGGTATACTCAAAATACACCTTTGGTACAAAATTGACAATCTCACAAGGATGAAATATCAGTAAT
TTTCTATTTACTGGTCGATCCCATCTTTTACAGAATCAATTCCTTTTTTGAATGTACAAAATTTTTGGGAGTTCAGCATG
TCTGGAAGCACGGGAGAATGTTCTTTTGCTGATATTATTGCCAGTATTCGATACTGGGTTATTCATAGCATTACTATACC
TTCCCTATTCATTGCGGGTTGGTTATTTGTCAGTACGGGTTTAGCTTATGACGTGTTTGGAAGTCCTAGGCCAAACGAGT
ATTTCACGGAAAGCCGACAAGGAATTCCGTTAATAACCGACCGTTTTGATTCTTTAGAACAACTCGATGAATTTAGTAGA
TCCTTTTAGGAGGCCCTCAATGACCATAGATCGAACCTATCCTATTTTTACAGTGCGATGGCTGGCTATTCACGGACTAG
CTGTACCTACTGTTTTTTTCTTGGGATAAATATCAGCAATGCAGTTCATCCAACGATAAAACAAATTCCAACTATAGAAC
TATGACACAATCAAACCCGAATG-AACAAAATGTTGAATTGAATCGTACCAGTCTATACTGGGGTTTATTACTCATTTTT
GTACTTGCTGTTTTATTTTCCAATTACTTCTTCAATTGAGAGAAAGAAAGAGACTAATAAGAATTCTCTTATCCCATTTG
GAAGGATACCATCCTTATAACTACCCATGACTGTTTTTGTCTCTAGCATGACCAATTGATAAAATGTGGAGGAAAGTAGG
GGAAATGGCCGATACTACTGGAAGAATTCCTCTTTGGCTGATAGGTACTGTAGCTAGTACTGCTGTGATTGGTTTAGTAG
GTGTTTTCTTTTATGGTTCATATTCTGGATTGGGTTCATCTCTATAGTAATCGGAGGGACCAGATTGTAAACATGAAAAA
GTAGGAGCTTAGCGGGTCCTTACCCCCCTTTATCTGATTAGAGCGGAAAGGACCCGTGGAATTTTTACTCTTATAACGCG
AATTGAATCTATTCGATTCACTCTTATGAAGCAACAAGAAAAAGAGATCACTCGAGGATCCAATATCTTATTCCACGAAG
GAAGTATCCTGAAAATCCTTGACTTAGTTTCGAGTAATAAACTAATAAAACCTTAATCAAAACTATTCAACTAGCCTAAA
AAT--AAAAAAACCTTCAATGGAAGAGTTTAC--TTTTTTTT--GCAAAATTTCTGTAAATTTGAAGTTGAACTTAATTA
AACAAGCCAAGCA-----ATTTGCTCACAATCACAAGAAATTTTTCCCCCGCCATATTTTCTTCCCCTCTGTTTGTCCAC
TACCTCGGCTAAACCTAAGCAAAATAAAGAGAGGTCCAAGAGACAGACCCGAATAAAGAAGAAATAGTAA----TCTTTG
ACGAATTAGGAATAAAAAGGATTCTTATTTTGATACAAGAAGAATCGACACAAGAAAAAGGCTTTTTCTTGTGCCGAATA
GACGATTAAGAAGACCTGCAATCCCTCCGAAAAGGAATAAATTTTAATTTTATTGTTCTCGCCTTTGCCTTGGATTATCT
TCTTTTGCATGGGATATAAATAAGGAATTCCAGAC--ATCTCATAAACAAAAAGCAGTCTAAACAAAAAAAGGATTTCCA
AAATAGATCATAGATAATTCTAGCAATTGCCAATAAATCGAGGCTTTTTACCAACTTGATGGTAAGAAATCCCGGGACCT
AGAAATTCATTTTGTACAATTGAACCTTTTCAAACTGTTTCTTTTTGAGAACCAAAAAAACTTGTGCCAAAATAATGGAT
GCGAAGAAG------------AACAAAAGGCCTTGGACACGTAATGGATCCTGAAGCACGATTTCTGCGTCCCCCTGACC
AAAACCTCCCACATTAGGATTGCTTGTTAATGGTTG
>chr2D_1
CCAAACCTATTGATCATTAACTTAGATTTT-CCCAAGATTTTGGCTGCTATTCCGAATTACTCTATTATTCCGAAGCCAA
TGAAAAGTAAGTAGAACCTACAAAAATGGGGTTTTCTATTGATGCCTTGAATAACATATAGCTTACCTATAGACAA----
---AAAA-------A--------------GTAATTATGTTTCGGAACCAGGCAAAACCAGATTGCTGTGCCATAGGAAGG
ATAGCTATACTAATTCGGTATACTCAAAATACACCTTTGGTACAAAATTGACAATCTCACAAGGATGAAATATCAGTAAT
TTTCTATTTACTGGTCGATCCCATCTTTTACGGAATCAATTCCTTTTTTGAATGTACAAAAATTTTGGGAGTTCAGCATG
TCTGGAAGCACGGGAGAACGTTCTTTTGCTGATATTATTACCAGTATTCGATACTGGGTTATTCATAGCATTACTATACC
TTCCCTATTCATTGCGGGTTGGTTATTTGTCAGTACGGGTTTAGCTTATGACGTGTTTGGAAGTCCTAGGCCAAACGAGT
ATTTCACGGAAAGCCGACAAGGAATTCCGTTAATAACCGACCGTTTTGATTCTTTAGAACAACTCGACGAATTTAGTAGA
TCCTTTTAGGAGGCCCTCAATGACCATAGATCGAACCTATCCTATTTTTACAGTGCGATGGCTGGCTATTCACGGACTAG
CTGTACCTACTGTTTTTTTCTTGGGATCAATATCAGCAATGCAGTTCATCCAACGATAAACCAAATTCCAACTATAGAAC
TATGACACAATCAAACCCGAATG-AACAAAATGTTGAATTGAATCGTACCAGTCTATACTGGGGTTTATTACTCATTTTT
GTACTTGCTGTTTTATTTTCCAATTACTTCTTCAATTGAGAGAAAGAAAGAGACTAATAAGAATTCTCTTATCCCATTTG
GAAGGATACCATCCTTATAACTACCCATGACTGTTTTTGTCTCTAGCATGACCAATTGATAAAATGTGGAGGAAAGTAGG
GGAAATGGCCGATACTACTGGAAGAATTCCTCTTTGGCTGATAGGTACTGTAGCTGGTATTGCTGTGATTGGTTTAGTAG
GTGTTTTCTTTTATGGTTCATATTCTGGATTGGGTTCATCTCTATAGTAATCGGAGGGACCAGATTGTAAACATGAAAAA
GTAGGAGCTTAGCGGGTCCTTACCCCCCTTTATCTGATTAGAGCGGAAAGGACCCGCGGAATTTTTACTCTTATAACGCG
AATTGAATCTATTCGATTCACTCTTATGAAGCAACAAGAAAAAGAGATCACTCGAGGATCCAATATCTTATTCCACGAAG
GAAGTATCCTGAAAATCCTTGATTTAGTTTCGAGTAATAAACTAATAAAACCTTAATCAAAACTATTCAACTAGCCTAAA
AAT-AAAAAAAACCTTCAATGGAAGAGTTTAC--TTTTTTTTTTGCAAAATTTCTGTAAATTTGAAGTTGAACTTAATTA
AACAAGCCAAGCA-----ATTTGCTCACAATCACAAGAAATTTTTCCCCCGCCATATTTTCTTCCCCTCTGTTTGTCCAC
TACCTCGGCTAAACCTAAGCAAAAGAAAAAGAGGTCCAAGAGACAGACCCGAATAAAGAAGAAATAGTAA----TCTTTG
ACGAATTAGGAAGAAAAAGGATTCTTATTTTGATACAAGAAGAATCGGCACAAGAAAAAGCCTTTTTCTTGTGCCGAATA
GACGATTAAGAAGACCTGCAATCCCTCCGAAAAGGAAGAAATTTTAATTTTATTGTTCTCGCCTTTGCCTTGGATTCTCT
TCTTTTGCATGGGATATAAATAAGGAATTCCAGAC--ATCTCATAAACAAAAAGCAGTCTAAACAAAAAAAGGATTTCCA
AAATAGATCATAGATAATTCTAGCAATTGCCAATAAATCGAGGCTTTTTACCAACTTGATGGTAAGAAATCCCGGGACCT
AGAAATTCATTTTGTACAATTGAACCTTTTCAAACTGTTTCTTTTTGAGAACCAAAAAAACTTGTGCCAAAATAACGGAT
GCGAAGAAG------------AACAAAAGGCCTTGGACACGTAATGGATCCTGAAGCACGATTTCTGCGTCCCCCTGACC
AAAACCTCCCACATTAGGATTGCTTGTTAATGGTTG
>chr1D_1
CCAAACCTATTGATCATTAACTTAGATTTT-CCCAAGATTTTGGCTGCTATTCCGAATTACTCTATTATTCCGAAGCCAA
TGAAAAGTAAGTAGAACCTACAAAAATGGGGTTTTCTATTGATGCCTTGAATAACATATAGCTTACCTATAGACAA----
---AAAA-------A------ATAAAAAAGTAATTATGTTTCGGAACCAGGCAAAACCAGATTGCTGTGCCATAGGAAGG
ATAGCTATACTAATTCGGTATACTCAAAATACACCTTTGGTACAAAATTGACAATCTCACAAGGATGAAATATCAGTAAT
TTTCTATTTACTGGTCGATCCCATCTTTTACGGAATCAATTCCTTTTTTGAATGTACAAAATTTTTGGGAGTTCAGCATG
TCTGGAAGCACGGGAGAACATTCTTTTGCTGATATTATTTCCAGTATTCGATACTGGGTTATTCATAGCATTACTATACC
TTCCCTATTCATTGCGGGTTGGTTATTTGTCAGTACGGGTTTAGCTTATGACGTGTTTGGAAGTCCTAGGCCAAACGAGT
ATATCACGGAAAGTCGACAAGGAATTCCGTTAATAACCGACCGTTTTGATTCTTTAGAACAACTCGATGAATTTAGTAGA
TCCTTTTAGGAGGCCCTCAATGACCATAGATCGAACCTATCCTATTTTTACAGTGCGATGGCTGGCTATTCACGGACTAG
CTGTACCTACTGTTGTTTTCTTGGGATCAATATCAGCAATGCAGTTCATCCAACGATAAAACAAATTCCAACTATAGAAC
TATGACACAATCAAACCCGAATG-AACAAAATGTTGAATTGAATCGTACCAGTCTATACTGGGGTTTATTACTCATTTTT
GTACTTGCTGTTTTATTTTCCAATTACTTCTTCAATTGAGAGAAAGAAAGAGACTAATAAGAATTCTCTTATCCCATTTG
GAAGGATACCATCCTTATAACTACCCATGACTGTTTTTGTCTCTAGCATGACCAATTGATAAAATGTGGAGGAAAGTAGG
GGAAATGGCCGATACTACTGGAAGAATTCCTCTTTGGCTGATAGGTACTGTAGCTGGTATTGCTGTGATTGGTTTAGTAG
GTGTTTTCTTTTATGGTTCATATTCTGGATTGGGTTCATCTCTATAGTAATCGTAGGGACCAGATTGTAAACATGAAAAA
GTAGGAGCTTAGCGGGTCCTTACCCCCCTTTATCTGATTAGAGCGGAAAGGACCCGCGGAATTTTTACTCTTATAACGCG
AATTGAATCTATTCGATTCACTCTTATGAAGCAACAAGAAAAAGAGATCACTCGAGGATCCAATATCTTATTCCACGAAG
GAAGTATCCTGAAAATCCTTGATTTAGTTTCGAGTAATAAACTAATAAAACCTTAATTAAAACTATTCAACTAGCCTAAA
AAT--AAAAAAACCTTCAATGGAAGAGTTTAC--TTTTTTTTT-GCAAAATTTCTGTAAATTTGAAGTTGAACTTAATTA
AACAAGCCAAGCA-----ATTTGCTCACAATCACAAGAAAATTTTCCCCCACCATATTTTCTTCCCCTCTGTTTGTCCAC
TACCCCGGCTAAACCTAAGCAAAAGAAAAAGAGGTCCATGAGACAGACCCGAATAAAGAAGAAATAGTAA----TCTTTG
ATGAATTACGAAGAAAAAGGGTTCTTATTTTGATACAAGAAGAATCGGCACAAGAAAAAGGCTTTTTCTTGTGCCGAATA
GACGATTAAGAAGACCTGCAATCCCTCCGAAAAGGAAGAAATTTTAATTTTATTGTTCTCGCCTTTGCCTTGGATTCTCT
TCTTTTGCATGGGATATAAATAAGGAATTCCAGAC--ATCTCATAAACAAAAATCAGTCTAAAGAAAAAAAGGATTTCCA
AAATAGATCATAGATAATTCTAGCAATTGCCAATAAATCGAGGCTTTTTACCAACTTGATGGTAAGAAATACCGGGACCT
AGAAATTCATTTCGTACAATTGAACCTTTTCAAACAGTTTCTTTTTGAGAACCAAAAAAACTTGTGCCAAAATAACGGAT
GCGAAGAAG------------AACAAAAGGCCTTGGACACGTAATGGATCCTGAAGCACGATTTCTGCGTCCCCCTGACC
AAAACCTCCCACATTAGGATTGCTTGTTAATGGTTG
>chr1D_1
CCAAACCTATTGATCATTAACTTAGATTTTTCCCAAGATTTTGGCTGCTATTCCGAATTACTCTATTATTCTGAAGCCAA
TGAAAAGTAAGTAGAACCTACAAAAAAGGGGTTTTCTATTGATGCCTTGAATAACATATAGTTTACCTATTGACAA----
---AATA-------ATAA------------TTATTATTTTTCGGAACCAGGCAAAACCAGATTTTTGTGCCATAGGAAGG
ATAGCTATACTAATTCGCTATACTCAAAATACACCTTTGGTACAAAATTGACAATCTCACAAGGATGAAATATCAGTAAT
TTTCTATTTACTGGTCGATCCCATCTTTTACGGAATCAATTCCTTTTTTGAATGTACAAAATTTTTGGGAGTTCAGCATG
TCTGGAAGCACGGGAGAACGTTCTTTTG-TGATAGTATTACCAATATTCGATACCGGGTTATTCATAGCATTACTATACA
TTCCATATTCATTGCGGGTTGGTTATTTGTCAGTACGGGTTTAGCTTATGACGTGTTTGCATGTCCTAGGCCAAACGAGT
ATTTCACGGAAAGCCGACAAGGAATTCTGTTAATAACCGACCGTTTTGATTCTTTAGAACAACTCGATGAATTTAGTAGA
TCCTTTTAGGAGGCCCTCAATGACCATAGATCGAACCTATCCTATTTTTACAGTGCGATGGCTGGCTATTCACGGACTAG
CTGTACCTACAGTCTTTTTCTTGGGATCAATATCAACAATGCAGTTCATCCAACGATAAACCAAATTCCAACTATAGAAC
TATGACACAATCAAACCCGAATG-AACAAAATGTTGAATTGAATCATACCAGTCTATACTGGGGTTTATTACTCATTTTT
GTACTTGCTGCTTAATTTTCCAATTACTTCTTCAATTGAGAGAAAGAAAGAGACTAATAAGAATTCTCTTATCTCATTTG
GAAGGATACCATCCTTATAACTACCCATGACTATTTTCGTCTCTTGCATGACCAATTGATAGAATGTGGAGGAAAGTAGG
GGAAATGGCCGATACTACTGGAAGAATTTCTCTTTGGCTGATAGGTACTATAGATGGTATTGCTGTGATTGGTTTAGTAG
GTGTTTTCTTTTATGGTTCATATTCTGGATTGGGTTCATCCCTATAGTAATCGGAGGGACTAGATTGTAAACATGAAAAA
GCAGGAGCTTAGCGGGTCCTTACCCCCCTTTATTTGATTAGAGCGGAAAGGACCCGCGGAATTTTTACTCTTATAACGCG
AATTGAATCTATTCGATTCACTCTTATGAAGCAACAAGAAAAAGAGATCACTCGAGGATCTAATATCTTATTCCACGAAG
GAAGTATCCTGAAAATCCTTGATTTAGTTTCGAGTAATAAACTAATAAAACCTTAATCAAAACTATTCAACTAGCCTAAA
AG------AAAACCTTCAATGGAAGAGTTTAC--TTTTTTTTT-GCAAAATTTCTGTAAATTTGAAGTTGAACTTAATTA
ATCAAGCCAAGCA-----ATTTGCTCACAATCACAAGAAATTTGTCCCCCGCCATATTTTC-TCCCCTCTGTTTGTCCAC
TACCTCGACTAAACCTAAGCAAAAGAAAAAGAGGTCCAAGAGACAGACCCGAATAAAGAAGAAATAGTAA----TCTTTG
ATGAATTAGGAAGAAAAAGGATTCTTATTTTGATACAAGAAGAATCGGCACAAGAAAAAGCCTTTTTCTTGTGCAGAATA
GACGATTAAGAAGACCCGCAATCCCTCCGAAAAGGAAGAAATTTTAATTTTATTGTTCTCGCCTTTGCCTTGGATTCTCT
TCTTTTGCATGGGATATAAATAAGGAATTCCGG--ATATCTCATAAACAAAAAATAGTCTAAACAAAAAAA--ATTTCCA
AAATAGATCATAGATAATTCTAGCAATTGCCAATAAATCGAAGCTTCTTACCAACTTGATGGTGAGAAATGCCGGGACCT
AGAAATTCATTTCGGACAATTGAACCTTTTCAAACTGTTTCTTTTTGAGAACCAAAAAA-CTTGTGCCAAAATAAC----
--------G------------AACAAAAGGCCTTGGACACGTAATGGATCCTGAAGCATGATTTTTGCACCCCCTA-ACC
AAAACCTCCCACAGTAGGATTGCTTGTTAATGGTTG
>chr1D_1
CCAAACCTATTGATCATTAACTTAGATTTT-CCCAAGATTTTGGCTGCTATTCCGAATTACTCTATTATTCTGAAGCCAA
TGAAAAGTAAGTAGAACCTACAAAAAAGGGGTTTTCTATTGATGCCTTGAATAACATATAGTTTACCTATTGACAA----
---AATA-------ATAA------------TAATTATGTTTCGGAACCAGGCAAAACCAGATTTTTGTGCCATAGGAAGG
ATAGCTATACTAATTCGCTATACTCAAAATACACCTTTGGTACAAAATTGACAATCTCACAAGGATGAAATATCAGTAAT
TTTCTATTTACTGGTCGATCCCATCTTTTACGGAATCAATTCCTTTTTTGAATGTACAAAAATTTTGCGAGTTCAGCATG
TCTGGAAGCACGGGAGAACGTTCTTTTG-TGATAGTATTACCAATAGTCGATACCGGGTTATTCATAGCATTACTATACA
TTCCATATTCATTGCGGGTTGGTTATTTGTCAGTACGGGTTTAGCTTATGACGTGTTTGCATGTCCTAGGCCAAACGAGT
ATTTCACGGAAAGCCGACAAGGAATTCTGTTAATAACTGACTGTTTTGATTCTTTAGAACAACTCGATGAATTTAGTAGA
TCCTTTTAGGAGGCCCTCAATGACCATAGATCGAACCTATCCTATTTTTACAGTGCGATGGCTGGCTATTCACGGACTAG
CTGTACCTACAGTCTTTTTCTTGGGATCAATATCAACAATGCAGTTCATCCAACGATAAACCAAATTCCAACTATAGAAC
TATGACACAATCAAACCCGAATG-AACAAAATGTTGAATTGAATCATACCAGTCTATACTGGG-TTTATTACTCATTTTT
GTACTTGCTGCTTAATTTTCCAATTACTTCTTCAATTGAGAGAAAGAAAGAGACTAATAAGAATTCTCTTATCTCATTTG
GAAGGTTACCATCCTTATAACTACTCATGACTGTTTTTGTCTCTTGCATGACCAATTGATAGAATGTGGAGGAAAGTAGT
GGAAATGGCCGATACTACTGGAAAAATTTCTCTTTGGCTGATAGGTACTATAGCTGGTATTGCTGTGATTGGTTTAGTAG
GTGTTTTCTTTTATGGTTCATATTCTGGATTGGGTTCATCTCTATAGTAATCGGAGGGACTAGATTGTAAACATGAAAAA
GCAGGAGCTTAGGGGGTCCTTACCCCCCTTTATTTGATTAGAGCGGAAAGGACCCGCGGAATTTTTACTCTTATAACGCG
AATTGAATCTATTCGATTCACTCTTATGAAGCAACAAGAAAAAGAGATCACTCGAGGATCTAATATCTTATTCCACGAAG
GAAGTATCCTGAAAATCCTTGATTTAGTTTCGAGTAATAAACTAATAAAACCTTAATCAAAACTATTCAACTAGCCTAAA
AG------AAAACCTTCAATGGAAGAGTTTAC-TTTTTTTTTT-GCAAAATTTCTGTAAATTTGAAGTTGAACTTAATTA
AACAAGCCAAGCA-----ATTTGCTCACAATCACAAGAAATTTGTCCCCCGCCATATTTTC-TCCCCTCTGTTTGTCCAC
TACCTCGACTAAACCTAAGCAAAACAAAAAGAGGTCCAAGAGACAGACCCGAATAAAGAAGAAATAGTAA----TCTTTG
ATGAATTAGGAAGAAAAAGGATTCTTATTTTGATACAAGAAGAATCCGCACAAGAAAAAGCCTTTTTCTTGTGCAGAATA
GACGATTAAGAAGACCCGCAATCCCTCCGAAAAGGAAGAAATTTTAATTTTATTGTTCTCGCCTTTGCCTTGGATTCTCT
TCTTTTGCATGGGATATAAATAAGGAATTCCGG--ATATCTCATAAACAAAAAATAGTCTAAACAAAAAAAT-ATTTCCA
AAATAGATCATAGATAATTCTAGCAATTGCCAATAAATCGAAGCTTCTTACCAACTTGATGGTGAGAAATGCCGGGACCT
AGAAATTCATTTCGGACAATTGAACCTTTTCAAACTTTTTCATTTTTAGAACC-AAAAAACTTGTGCCAAAATAAC----
--------G------------AACAAAAGGCCTTGGACACGTAATGGATCCTGAAGCATGATTTTTGCACCCCCTA-ACC
AAAACCTCCCACAGTAGGATTGCTTGTTAATGGTTG
>chr1D_1
CCAAACCTATTGATCATTAACTTAGATTTT-CCCAAGATTTTGGCTGCTATTCCGAATTACTCTATTATTCTGAAGCCAA
TGAAAAGTAAGTAGAACCTACAAAAAAGGGGTTTTCTATTGATGCCTTGAATAACATATAGTTTACCTATTGACAA----
---AATA-------ATAA------------TAATTATGTTTCGGAACCAGGCAAAACCAGATTTTTGTCCCATAGGAAGG
ATAGCTATACTAATTCGCTATACTCAAAATACACCTTTGGTCCAAAATTGACAATCTCAAAAGGATGAAATATAAGTAAT
TTTCTATTTACTGGTCGATCCCATCTTTTACGGAATCAATTCCTTTTTTGAATGTACAAAATTTTTGGGAGTTCAGCATG
TCTGGAAGCACGGGAGAACGTTCTTTTG-TGATAGTATTACCAATATTCCATACTGGGTTATTCATAGCATTACTATACA
TTCCCTATTCATTGCGGGTTGGTTATTTGTCAGTACGGGTTTAGCTTATGACATGTTTGCAAGTCCTAGGCCAAACGAGT
ATTTCACGGAAAGCCGACAAGGAATTCAGTTAATAACCGACCGTTTTGATTCTTTAGAACAACTCGATGAATTTACTAGA
TCCTTTTAGGAGGCCCTCAATGACCATAGATCGAACCTGTCCTGTTTTTACAGTGCGATGGCTGGCTATTCGCGGACTAG
CTGTACCTATAGTCTTTTTCTTGGGATCAATATCAACAATGTAGTTCATCCAACGATAAACCAAATTCCAACTATAGAAC
TATGACACAATCAAACCCGAATG-AACAAAATGCTGAATTGAATCGTACCAGTCTATACTGGG-TTTATTACTCATTTTT
GTACTTGCTGCTTAATTTTCCAATTACTTCTTCAATTGAGAGAAAGAAAGAGACTAATAAGAATTCTCGTATCTAAATTG
GAAGGATACCATCCTTATAACTACCCATGACTGTTTTTGTCTCTTGCATGACCAATTGATAGAATGTGGAGGAAAGTAGG
GGAAATGGCCGATACTACTGGAAGAATTTCTCTTTGGCTGATAGGTACTAATGCTGGTATTGCTGTGATTGGTTTAGTAG
GTGTTTTCTTTTATGGTTCATATTCTGGATTGGGTTCATCTCTATAGTAATCGGAGGGACTAGATTGTGAACATGAAAAA
GCAGGAGCTTAGCGGGTCCTTACCCCCCTTTATCTGATTAGAGCGGAGAGGACCCGCGGAATTTTTACTCTTATAACGCG
AATTGAATCTATTCGATTCACTCTTCTGAAGCAACAAGAAAAAGAGATCACTCGAGGATCTAATATCTCATTGCACGAAG
GAAGTATCCTAAAAATCCTTGATTTAGTTTCGAGTAATAAACTAATAAAACCTTAATCAAAACTATCCAACTAGCCTAAA
AG------AAAACCTTCAATGTAACAGTTTACTTTTTTTTTTT-GCAAAATTTCTGTAAATTTGAAGTTGAACTTAATTA
AACAAGCCAAGCA-----ATTTGCTCACAATCACAAGAAATTTGTCCCCCGCCATATTTTCTCCCCCTCTGTTTGTCCAC
TACCTCGACTAAACCTAAGCAAAAGAAAAAGAGGTCCAAGAGACAGACCCGAATAAAGAAGAAATAGTAA----TCTTTG
ACGAATTAGGAAGGAAAAGGATTCTTATTTTGATACAAGAAGAATCAGCACAAGAAAAAGCCTTTTTCTTGTGCCGAATA
GACGATTAAGAAGACCCGCAATCCCTCCGAAAAGGAAGAAATTTTAGTTTTATTGTTCTCGCCTTTGCCTAGGATTCTCT
TCTTTTGCATGGGATATAAATAAGGAATTCCAGATATATCTCATAAACAAAAAATAGACTAAACAAAAAA-T-ATTTCCA
AAATAGATCATAGATAATTCTAGCAATTGCCAATAAATCAAAGCTTTTTACCAACTTGATCGTAAGAAATGCCGGGACCT
AGAAATTCATTTCGGACAATTGAACCTTTTCAAACTGTTTCTTTTTGAGAACCAAAAAAACTTGTGCCAAAATAAC----
--------G------------AACAAAAGGCCTTGGACACGTAATGGATCCTGAAGCATGATTTTTGCACCCCCTA-ACC
AAAACCTCCCACAGTAGGATTGCTTGTTAATGGTTG
>chr2A_1
CCAAATCTATTGATCATTAACTTAGATTTT-CCCAAGATTTTGGCTGCTATTCTGAATTACTCTATTATTCCGAAGCCAA
TGAAAAGTAAGTAGAACCTACAAAAATGGGGTTTTCTATTGATGCCTTGAATAACATATAGCTTACCTATAGATAA----
---AAAA-------ATAAAAAATAAAAAAGTAATTATGTTTCGGAACCAGGCAAAACCAGATTGCTGTGCCATAGGAAGG
ATAGATATACTAATTCGGTATACTCAAAATACACCTTTGGTACAAAATTGACAATCTCACAAGGATGAAATATCAGTAAT
TTTCTATTTACTGGTCGATCCCATATTTTACGGAATCAATTCCTTTTTTGAATGTACAAAAAATTTGGGAGTTCAGCATG
TCTGGAAGCATGGGAGAACGTTCTTTTGCTGATATTATTACTAGTATTCGATACTGGGTTATTCATAGCTTTACTATACC
TTCCCTATTCATTGCGGGTTGGTTATTTGTCACTATGGGTTTAGCTTATGACGTGTTTGGAAGTCCTAGGCCAAACGAGT
ATTTCACGGAAAGCCGACAAGGAATTCCGTTAATAACTGACCATTTTGATTCTTTAGAACAACTCGATGAATTTAGTAGA
TCCTTTTAGGAGGCCCTCAATGACCATAGATCGAACCTATCCTATTTTTACAGTGCGATGGCTGGCTATTCACGGACTAG
CTGTACCTACTATTTTTTTCTTGGGATCAACATTAGCAATGTAGTTCATCCAACGATAAAACAAATTCCAACTATAGAAC
TATGACACAATCAAACCCGAATG-AACAAAATGTTGAATTGAATTGTACCAGTCTATACTGGGGTTTATTACTCATTTTT
GTACTTGTTGTTTTATTTTCCAATTACTTCTTCAATTGAGAGAAAGAAAGAGACTAATAAGAATTCTCTTACCCCATTTG
GAAGGATACCATCCTTATAACTACCCATGACAGTTTTTGTCTCTAGCATGACCAATTGATAAAATGGGGAGGAAAGTAGG
GGAAATGGCCGATACTACTGGAAGAATTCCTCTTTGCCTGATAGGTACTGTAGCTGGTATTGCTGTGATTGGTTTAGTAG
GTGTTTTCTTTTATGGTTCATATTCTGGATTGGGTTCATCTCTATAGTAATCGGAGGGACCAGATTGTAAACATGAAAAA
GTAGGAGCTTAGCGGGTCCTTACCCCCCTTTATCTGATTAGAGCGGAAAGGACCCGCGGAATTTTTACTCTTATAACGCA
AATTGAATCTATTCGATTCACTCTTATGAAGCAACAAGAAAAAGAGATCACTCGAGGATCCAATATCTTATTCCACGAAG
GAAGTATCCTGAAAATCCTTGATTTAGTTTCGAGTAATAAACTAATAAAACCTTAATCAAAACTATTCAACTAGCCTAAA
AATAAAAAAAAACCTTCAATGGAAGAGTTTAC--TTTTTTTTT-GCAAAATTTCTGTAAATTTGAAGTTGAACTTAATTA
AACAAGCCAAGCA-----ATTTGCTCACAATCACAAGAAATTTTTCCCCCGTCATATTTTCTTCCCCTCTGTTTGTCCAC
TACCTCGGCTAAACCTAAGCAAAAGAAAAAGCGGTCCAAGAGACAGACCCGAATAAAGAAGAAATAGTAA----TCTTTG
ACGAATTAGGAAGAAAAAGGATTCTTATTTTTATACAAGAAGAATCGACACAAGAAAAAGGCTTTTTCTTGTGCCGAATA
GACGATTAAGATGACCTGCAATCCCTCCGAAAAGGAAGAAATTTTAATTTTATTGTTCTCGCCTTTACCTTGGATTCTCT
TCTTTTGCATGGGATATAAATAAGGAATTCCAGAC--TTCTCATAAACAAAAAGCAGTCTAAACAAAAA-AGGATTTCCA
AAATAGATCATAGATAATTCTAGCAATTGCCAATAAATCGAGGCTTTTTACCAACTTGATGGTAAGAAATCCCGGGACCT
AGAAATTCATTTCGTACAATTGAACCTTTTCAAACTGTTTCTTTTTGAGAACCAAAAAAACTTGTGCCAAAATAACGGAT
GCGAAGAAG------------AACAAAAGGCCTTGGACACGTAATGGATCCTAAAGCACGATTTCGGCGTCCCCCTGACC
AAAACCTCCCACATTAGGATTGCTTGTTAATGGTTG
>chr6D_1
CCAAACCTATTGATCATTAACTTAGATTTT-CCCAAGATTTTGGCTGCTATTCCGAATTACTCTATTATTCCGAAGCCAA
TGAAAAGTAAGTAGAACCTACAAAAATGGGGTTTTCTATTGATGCCTTGAATAACATATAGCTTACCTATAGACAA----
---AAAA-------A------ATAAAAAAGTAATTATGTTTCGGAACCAGGCAAAACCAGATTGCTGTGCCATAGGAAGG
ATAGCTATACTAATTCGGTATACTCAAAATACACCTTTGGTACAAAATTGACAATCTCACAAGGATGAAATATCAGTAAT
TTTCTATTTACTGGTCGATCCCATCTTTTACGGAATCAATTCCTTTTTTGAATGTACAAAAATTTTGGGAGTTCAGCATG
TCTGGAAGCACGGGAGAACGTTCTTTTGCTGATATTATTACCAGTATTCGATACTGGGTTATTCATAGCATTACTATACC
TTCCCTATTCATTGCGGGTTGGTTATTTGTCAGTACGGGTTTAGCTTATGACGTGTTTGGAAGTCCTAGGCCAAACGAGT
ATTTCACGGAAGGCCGACAAGGAATTCCGTTAATAACCGACCGTTCTGATTCTTTAGAACAACTCGATGAATTTAGTAGA
TCCTTTTAGGAGGCCCTCAATGACCATAGATCGAACCTATCCTATTTTTACAGTGCGATGGCTGGCTATTCACGGACTAG
CTGTACCTACTGTTTTTTTCTTGGGATCAATATCAGCAATGCAGTTCATCCAACGATAAAACAAATTCCAACTATAGAAC
TATGACACAATCAAACCCGAATG-AACAAAATGTTGAATTGAATCATACCAGTATATACTGGGGTTTATTACTCATTTTT
GTACTTGTTGTTTTATTTTCCAATTACTTCTTCAATTGAGAGAAAGAAAGAGACTAATAAGAATTCTCTTATCCCATTTG
GAAGGATACCATCCTTATAACTACCCATGACTGTTTTTGTCTCTAGCATGACCAATTGATAAAATGTGGAGGAAAGTAGG
GGAAATGGCCGATACTACTGGAAGAATTCCTCTTTGGCTGATAGGTACTGTAGCTGGTATTGCTGTGATTGGTTTAGTAG
GTGTTTTCTTTTATGGTTCATATTCTGGATTGGGTTCATCTCTATAGTAATCGGAGGGACCAGATTGTAAACATGAAAAA
GTAAGAGCTTAGCGGGTCCTTACCCCCCTTTATCTGATTAGAGCGGAAAGGACCCGCGGAATTTTTACTCTTATAACGCG
AATTGAATCTATTCGATTCACTCTTATGAAGCAACAAGAAAAAGAGATCACTCGAGGATCCAATATCTTATTCCACGAAG
GAAGTATCCTGAAAATCCTTGATTTAGTTTCGAGTAATAAACTAATAAAACCTTAATCAAAACTATTCAATTAGCCTAAA
AAT-AAAAAAAACCTTCAATGGAAGAGTTTAC--TTTTTTTTTTGCAAAATTTCTGTAAATTTGAAGTTGAACTTAATTA
AACAAGCCAAGCA-----ATTTGCTCACAATCACAAGAAATTTTTCCCCCGCCATATTTTCTTCCCCTCTGTTTGTCCAC
TACCTCGGCTAAACCTAAGCAAAAGAAAAAGAGGTCCAAGAGACAGACCCGAATAAAGAAGAAATAGTAA----T----G
ACGAATTAGGAAGAAAAAGGATTCTTATTTTGATACAAGAAGAATCGGCACAAGAAAAAGGCTTTTTCTTGTGCCGAATA
GACGATTAAGAAGACCTGCAATCCCTCCGAAAAGGAAGAAATTTTAATTTTATTGTTCTCGCCTTTGCCTTGGATTCTCT
TCTTTTGCATGGGATATAAATAAGGAATTCCAGAC--ATCTCATAAACAAAAAGCAGTCTAAACAAAAAAAGGATTTCCA
AAATAGATCATAGATAATTCTAGCAATTGCCAATAAATCGAGGCTTTTTACCAACTTGATGGTAAGAAATCCCGGGACCT
AGAAATTCATTTCGTACAATTGAACCTTTTCAAACTATTTCTTTTTGAGAACCAAAAAAACTTGTGCCAAAATAAC----
--------GGATGCGAAGAAGAACAAAAGGCCTTGG--------------------------------------------
------------------------------------
>chr3B_1
CCAAACCTATTGATCATTAACTTAGATTTT-CCCAAGATTTTGGCTGCTATTCCGAATTACTCTATTATTCCGAAGCCAA
TGAAAGGTAAGTAGAACCTACAAAAATGGGGTTTTCTATTGATGCCTTGAATAACATATAGCTTACCTATAGACAA----
---AAAATAAAAAAA------ATAAAAAAGTAATTATGTTTCGGAACCAGGCAAAACCAGATTGTTGTGCCACAGGAAGG
ATAGCTATACTAATTCGGTATACTCAAAATACACCTTTGGTAGAAAATTGACAATCTCATAAGGATGAAATATCAGTAAT
TTTCTATTTACTGGTCGATCCCATCTTTTACGGAATCAATTCCTTTTTTGAATGTACAAAAATTTTGGGAGTTCAGCATG
TCTGGAAGCATGGGAGAATGTTCTTTTGCTGATATTATTACCAGTATTCGATACTGGGTTATTCATAGCATTACTATACC
TTCCCTATTCATTGCGGGTTGGTTATTTGTCAGTACGGGTTTAGCTTATGACGTGTTTGGAAGTCCTAGGCCAAACGAGT
ATTTCACGGAAAGCCGACAAGGAATTCCGTTAATAACCGACCGTTTTGATTCTTTAGAACAACTCGATGAATTTAGTAGA
TCCTTTTAGGAGGCCCTCAATGACCATAGATCGAACCTATCCTATTTTCACAGTGCGATGGCTGGCTATTCACGGACTAG
CTGTACCTACTGTTTTTTTCTTGGGATCAATATCAGCAATGCGGTTCATCCAACGATAAACCAAATTCCAACTATAGAAC
TATGACACAATCAAACCCGAATGAAACAAAATGTTGAATTGAATCGTACCAGTCTATACTGGGGTTTATTACTCATTTTT
GTACTTGCTGTTTTATTTTCCAATTACTTCTTCAATTGAGAGAAAGAAAGAGACTAATAAGAATTCTCTTATCCCATTTG
GAAGGATACCGTCCTTATAACTACTCATGAATGTTTTTGTCTCTAGCATGACCAATTGATAAAATGTGGAGGAAAGTAGG
GGAAATGGCCGATACTACTGGAAGAATTCCTCTTTGGCTGATAGGTACTGTAGCCGGTATTGCTGTGATTGGTTTAGTAG
GTGTTTTCTTTTATGGTTCATATTCTGGATTGGGTTCATCTCGATAGTAATCGGAGGGACCAGATTGTAAACATGAAAAA
GTAGGAGCTTAGCGGGTCCTTACCCCCCTTTATCTGATTAGAGCGGAAAGGACCCGCGGAATTTTTACTCTTATAACGCG
AATTGATTCTATTCGATTCACTCTTATGAAGCAACAAGAAAAAGAGATCACTCGAGGATCCAATATCTTATTCCACGAAG
GAAGTATCCTGAAAATCCTTGATTTAGTTTCGAGTAATAAACTAATAAAACCTTAATCAAAACTATTCAACTAGCCTAAA
-------AAAAACCTTCAATGGAAGAGTTTAC--TTTTTTTTT-GCAAAATTTCTGTAAATTTGAAGTTAAACTTAATTA
AACAAGCCAAGCAATTCTATTTGTTCACAATCACAAGAAATTTGTCCCCCGCCATATTTTCTTCCCCTCTGTTTTTCCAC
TACCTCGGCTAAACCTAAGCAAAAGAAAAAGAGGTCCAAGAGACAGACCCGAATAAAGAAGAAATAGTAATCTTT----G
ACGAATTAGGAAGAAAAAGGATTCTTATTTTGATACAAGAAGAATCGGCACAAGAAAAAGCCTTTTTCTTGTGCCGAATA
GACGATTAAGAAGACCTGCAATCCCTCCAAAAAGGAAGAAAATTTAATTTTATTGTTCTCGCCTTTGCCTTGGATTCTCT
TCTTTTGCATGGGATATAAATAAGGAATTCCAGAC--ATCTCATAAACAAAAAATAGTCTAAACAAAAA-AGGATTTCCA
AAATAGATCATAGATAATTCTAGCAATTGCCAATAAATCGAGGCTTTTTACCAACTTGATGGTAAGAAATCGCGAGACCT
AGAAATTCATTTCGTACAATTGAACCTTTTCAAACTGTTTCTTTTTGAGAACCAAAAAA-CTTGTGCCAAAATAATGGAT
GCGAAGAAG------------AAGAAAAGGCCTTGGACACGTAATGGATCCTGAAGCACGATTTCTGCGTCCCCCTGACC
AAAACCTCCCACATTAGGATTGCTTGTTAATGGTTG
>chr1A_225
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------ATACTAATTCGGTATACTCAAAATACACCTTTGGTACAAAATTGACAATCTCACAAGGATGAAATATCAGTAAT
TTTCTATTTACTGGTCGATCCCATCTTTTACGGAATCAATTCCTTTTTTGAATGTACAAAAATTTTGGGAGTTCAGCATG
TCTGGAAGCACGGGAGAACGTTCTTTTGCTGATATTATTACCAGTATTCGATACTGGGTTATTCATAGCATTACTATACC
TTCCCTATTCATTGCTGGTTGGTTATTTGTCAGTACGGGTTTAGCTTATGACGTGTTTGGAAGTCCTAGGCCAAACGAGT
ATTTCACGGAAAGCCGACAAGGAATTCCGTTAATAACCGACCGTTTTGATTCTTTAGAACAACTCGGTGAATTTAGTAGA
TCCTTTTAGGAGGCCCTCAATGACCATAGATCGAACCTATCCTATTTTTACAGTGCGATGGCTGGCTATTCACGGACTAG
CTGTACCTACTGTTTTTTTCTTGGGATCAATATCAGCAATGCAGTTCATCCAACGATAAACCAAATTCCAACTATAGAAC
TATGACACAATCAAACCCGAATG-AACAAAATGTTGAATTGAATCGTACCAGTCTATACTGGGGTTTATTACTCATTTTT
GTACTTGCTATTTTATTTTCCAATTACTTCTTCAATTGAGAGAAAGAAAGAGACTAATAAGAATTCTCTTATCCCATTTG
GAAGGATACCATCCTTATAACTACCCATGACTATTTTTGTCTCTAGCATGACCAATTGATAAAATGTGGAGGAAAGTAGG
GGAAATGGCCGATACTACTGGAAGAATTCCTCTTTGGCTGATACGTACTGTAGCCGGTATTGCTGTGATTGGTTTAGTAG
GTGTTTTCTTTTATGGTTCATATTCTGGATTGGGTTCATCTCTATAGTAATCGGAGGGACCAGATTGTAAACATGAAAAA
GTAGGAGCTTAGCGGGTCCTTACCCCCCTTTATCTGATTAGAGCGGAAAGGACCCGCGGAATTTTTACTCTTATAACGCG
AATTGATTCTATTCGATTCACTCTTATGAAGCAACAAGAAAAAGAGATCACTCGAGGATCCAATATCTTATTCCACGAAG
GAAGTATCCTGAAAATCCTTGATTTAGTTTCGAGTAATAAACTAATAAAACCTTAATCAAAACTATTCAACTAGCCTAAA
-------AAAAACCTTCAATGGAAGAGTTTAC--TTTTTTTTT-GCAAAATTTCTGTAAATTTGAAGTTGAACTTAATTA
AACAAGCCAAGCAATTCTATTTGTTCACAATCACAAGAAATTTGTCCCCCGCCATATTTTCTTCCCCTCTGTTTGTCCAC
TACCTCGGCTAAACCTAAGCAAAAGAAAAAGAGGTCCAAGAGACAGACCCGAATAAAGAAGAAATAGTAATCTTT----G
ACGAATTAGGAAGAAAAAGGATTCTTATTTTGATACAAGAAGAATCGGCACAAGAAAAAGCCTTTTTCTTGTGCCGAATA
GACGATTAAGAAGACCTGCAATCCCTCCGAAAAGGAAGAAATTTTAATTTTATTGTTCTCGCCTTTGCCTTGGATTCTCT
TCTTTTGCATGGGATATAAATAAGGAATTCCAGAC--ATCTCATAAACAAAAAACAGTCTAAACAAAAAAAGGATTTCCA
AAATAGATCATAGATAATTCTAGCAATTGCCAATAAATCGAGGCTTTTTACCAACTTGATGGTAAGAAATTGTGAGACCT
AGAAATTCATTTCGTACAATTGAACCTTTTCAAACTGTTTCTTTTTGAGAACCAAAAAAACTTGTGCCAAAATAATGGAT
GCGAAGAAG------------AACAAAAGGCCTTGGACACGTAATGGATCCTGAAGCACGATTTCTGCGTCCCCCTGACC
AAAACCTCCCACATTAGGATTGCTTGTTAATGGTTG
>SNPs
---------------------S----------------------------------------------------------
---------------------------------------------------S------------------------SSSS
SSS--------------------------------S----------------------------S---------------
--------------------------------------------------------------------------------
-------------------------------S------------------------------------------------
---------------------------------------S----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S---S--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
----------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S---S---------------------------------------------------
------------S-------------------------------------------------------------------
-------------------------------------S--------------------------------------S---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>forward_225
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------ACCAGGCAAAACCAGATTGA---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>reverse_1629
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------GAGAGGTCCAAGAGACAGACC-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
