>input_sequence_87395
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-----------------------------------------------------------------ATGGCGGCGGGCTCG
GCGGCGACCGGCGCGGACGAGAAGGCTCTGGCGCAGGGGTGGCGGAGGGTCGTTGACCGGGAGGCCGTCGACCGGGGCGT
CGCCTACGCGCTCATGGTCGTCGCTCTCGTCGCCACGTATGCGCTTCACTAG----------------------------
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>chr6A_1_TraesCS6A01G179700
AGGTGGTGTCTTGCATGACAAGCCAACTAACCCTACAATATCTCTAAAAATCAGCTATACAAGGCTAGAGATACTCCCTC
CGGTCCTTTTTAGTTCGCATATAGGATTTGACTAAAGTCAAGCCTCGTAAAATTTGACCAACTTTATAGAAAAGAGTGTC
AACATTCATAATCTGAAATCAATACCACTAGATGTGTCATGACTTAAAGTTTCATATTATATAACTTTAGCATGACAGAT
GTTGATATTTTTTCATATAAATACGGTCAAATTTTGTGAAATTTGACTCCAGAAAATTTTAATATGTAGAGTAAAAAGGA
CCGGAGGGAGTAATAGAAGAATCAGTCGAAAATAAATACAAAAATATCACGTTTCAACACCATCGAATGAGTTTCCGCTG
ACTTGATCAACTCATGACCATCAAATGGACGCTCTGGTTCTCATCGCGGCAACAACACGGAAATTGGAAAATGATGGTGA
CAG-AGAGGCATTGTTTGCCTCGACACGGTGCCAGCGTGAAGACCCAGCGAAGCTGGGTTTCTCTTCGATGAAAAGCAGA
GTTTGACCCATTTGACCCACGATTGACAAAACATAGCTTGCTTTTCCTGCGGACAAAACCTTCTACGCCAGCCATATATA
TTCCGGACGCTTGACCAGGTCAGGTTATAGCTCCGCTCAAACAATAGAAAT--GGGTAGGTTATTCCCTGCATCTGGGTC
CAGCGAACGGCTGCCGTCCCGGCCGGCCAGATCAAGAGCCGGCACCGCCGAAGCGACACGCAAAAAGGCAAGCCCCGATC
AAACGAGGCGGCTATCGTCTGAAGTCTACTTGGCGTCGCCTCGCGCACCCAGCTCCCTCTGCGCGTATATATCTCTGCGC
GCGCACACACCAGGGCATCAACCCATCTCTA-GCTGCCGAACTTGTTACCTAG--------------------TGTGAGC
TCTCT-CCCAAGCAAGCTCTAGGATCGGCTTTCTGTCGTCCGGCTCGGTGCATTGTTCGATCGGGATGGCGGCGGGCTCG
GCGGCGACCGGCGCGGACGAGAAGGCTCTGGCGCAGGGGTGGCGGAGGGTCGTTGACCGGGAGGCCGTCGACCGGGGCGT
CGCCTACGCGCTCATGGTCGTCGCTCTCGTCGCCACGTATGCGCTTCACTAGCCTGCTACATCGGCTCCCATACATGAAT
ACCATGGGCGGCCGGAGACGGAGAGGAAGGATTTTGTTCCGATCGAGTTTGGTCGCTTTCCACGGCGCGAGTCTCTGCGT
TTCAAGTGGCCGCACTTCTATGTGTGATGTTCTTTCTTTTTAAACTTCGACGTGTAGTGAGAGTTGAGAGAGGAGGGGAG
AAAATGATATACAGATGATCATGTATATTTTATTTTATTTGCAATAAAACCCCTGACCTTAGTATCAGATGGGACCAGTG
GCGGGGCC-AAAAAAAATTTATCACGGGGCTGAGTGATGCTAAAACAGATTGGGAAGAGCCAAAACCTAAAAAAATGAGT
TTTTAGCTGCAAATGACCGGTAATTATGTACTATTCATAAGTAAATTAGCATGAAATCCTTGTTGTTAAAGGGGCCGCAT
GGCCAAGGCCGGTCCTGAGATTTCGAGGG-CCAGGGCAAAAGCTAGACTCAAACGCCCTTAACATAAACATAAAAAAAAT
GA--ACGAAATATGTTGAATTGTCAGCTAAATAAAATACACTATTTTTTCTCTATACAATATATTCTTTACAAATATGTT
CCAGAGCACAGAAGTAAAGTGTATTAGTATTTAGTTGT-------GCCAAGCATTGTAGTAAAAACAAATACCTCATCAA
GACTAACAAATGATTTAAATACTCATAATCATACTCATGTTGTTATCATCCATGTTGATGTCAACACGTGTATAGCCCTC
GTCGTATCGACTAAGATTAGAAACTATTGCTAAGTCGCCAAACTCAGAATTCATAACCCAGACAATGTATACCAATAA--
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-----------------------------GCAATATCTATCTGCGACCGGTTGCAACGACGGGGAGGTAATAATGATGAT
CATTTATCAATTTT-ATAATCAATCAATAATCAACATGGTAAAATCTCAAAG-GCATATAGGCTACCTATATAAATAGAG
ATTAGAGACATACTTTCACTTCTTTGTAACTGTGATCGCGTCTTCAGGGTTCGATC
>chr6D_380
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-----------------------------------------------------------CCATCGAATGAGTTTCCGCTG
ACTTGATCAACTCATGTCCAGCAAATGCACGCCCTGGTTCTCATCGCGGCAACAACATGGAAATTGAAAAATGAATGGTG
GTACAGAGGCATTGTTTGCCTCGACACGGTGCCAGCGTGAAGACCCGGCGAAGCTGGGTTTCTCTTCGATGAAAAGCAGA
GTTTGAC---------CCACGATTGACAAAACATAGCTTGCTTTTCCTGCGGAC------------GCCAGCCATATATA
TTTGGGACGCTTGACCAGGTCAGATTATAGCTCCGCTCAAAGAAATAGAAATGGGGTAGGTTATTCCCTGCATCTGGGTC
CAGCGAACGGCTGCCGTCCCGGCCGGCCAGATCAAGAGCCGGCACCGGCGAAGCGACAGGCAAAAAGGCAAGCCCCGATC
AAACGAGGCGGCTACCGTCTGAAGTCTACCTGGCGTCGCCTCGCGCACCCAGCTCCCTCTGCGCGTATATATCTCTGCGC
GCGCGCACACCATGGCATCAACCCATCTCTAAGCTGCCGAACTTGTCACCTAGAAGTAGAATACTGTCGCTAGTGCGAGC
TCTCT-CCAAAGCAAGATCTAGGATCGGCTTTCTGTCGTCCGGCTCGGTGCATTGTTCGATCGGGATGGCGGGGGGCTCG
GCGGCGACCGGCGCGGACGAGAAGGCTCTGGCGCAGGGATGGCGGAGGGTCGTGGACCGGGAGGCCGTCGACCGGGGCGT
CGCCTACGCGCTCATGGTCGTCGCTCTCGTCGCCACGTATGCGCTTCACTAGCCTGCTACATCGGCTCCCAAACATACAT
ACCATGGGCGGCCGGAGACGGAGAGGAAGGATTTTGTTCCGATCGAG----------------------------TGCGT
TTCAAGTGGCCGCACTTCTATGTGTGATGTTCTTTCTTTTTAAACTTCGACGTCTAGTGAGAGTTGAGAGAGGAGGGGAG
AAAATAT-----AGATGATCATGTATATTTTATTTTATTTGCAATAAACCCCCTGACCTTAGTATCAGATGGGACCAGTG
GCGGAGCCAAAAAAAAATTTATCACGGG----------------------------------------------------
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>chr6B_382
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-------------------------------------------------------------ATCGAATGAGTTTCCGCTA
ACTTGATCAACTCATGACCATCAAATGGACGCCCTGGTTGTCGTCGTCGCAACAACACGGAAATTGGAAAATGAATGGTG
ATATAGAGGCATTGTTTGCCTCGACACGGTGCCAGCGTGAAGACCCGGCGAAGCTGGGTTTCTCTTCGATGAAAAGCAGA
GTTTGAC---------CCATG-TTGACAAAACATAGCTTGCTTTTCCTGCGGACAAAACCTGCTACGCCAGCCATCTATA
TTCCGGACGCTTGACCAGGTCAGGTTATAGCTCCGCTCAAACAAATAGAAATGGGGTACTACCGT---------------
-----------------------CGGCTAGATCAAGAGCCGGCACCGCCGAAGCGACAGGCAAAAAGGCAAGCCCCGATC
AAACGAGGCGGCTACCGTCTGAAGTCTACCTGGCGTCGCCTCGCGCACCCGGCTCCCTCTGC--------------GCGC
GCGCGCACACCATGGCATCAACCCATCTCTA-GCTGCCGAACTTGTCGCCTAGAAGTAGAATACTGTGGCTAGTGCGACC
TCTCTCCCAAAGCAAGCTCTAGGATCGGCTTTCTGTCTTCCGGCTCGGTACATTGTTCGATCGGGATGGCGGGGGGCTCG
GCGGCGACCGGCGCGGACGAGCAGGCTCTGGCGCAGGGGTCGCGGAGGGTCGTTGACCGGGAGGCCGTCGACCGGGGCGT
CGCCTACGCGCTCATGGTCGTCGCTCTCGTCGCCACGTATGCGCTTCACTAGCCTGCTACATCGGCTCCCATACATACAT
ACCATGGGCGGCCGGAGACGGAGAGGAAGGATTTTGTTCCGATCGAG----------------------------TGCGT
TTCAAGTGGCCGCACTT-TATGTGTGATGTTCTTTCTTTTTAAACTTCGACGTGTAGTGAGAGTTGAGAGAGGAGGGGAG
AAAATAT-----AGATGATCATGTATATTTTATTTTATTTGCAATAAAA-CCCTGACCTTAATATCAGATGGGACCAGTG
ACGGAGCC-AAAAAAAATTTATCACGGG----------------------TGGGAAGGGACAAAACCTAGAAAAATGAGT
-----------------------------ACTATTCATAAGCAAATTAACATGAAATCCTTGTTGTTAAGGGGCCAGGCC
CTGGCGA--------------------GG-CCAGGGCGAAAGCTAGACTCAAACGCCCTTAACATAAACACACACAAAAT
GA--ACTGAATATTTTAAATTGTCAGCTAAATAAAATATACTATTTTT-CTCTATATATTATATTTTTTACAAATATGTT
CGAGAGCACAGAAGTAAAGTGTGTTAGTATTTAGTTGTTTGTTGTGCAAAGCATTGTTGTAAAAACAAATACCTCATCAA
GACTAACAAATGATTTAAATACTCATAGCCACACTCATGTTGTTATCATCCATGTTGATATCAACA--------------
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>chr6D_1577
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--CCAGGGCCGGTCCTGAGATTTCGGGGGTCCAGGGCGAAAGCTAGACTCAAATGCCCTTAACATAAACATAAAAGAAAA
TTGTACGAAATATGTTGAATTGTCAGCTAAATGAAATACACTATTATTTTATATATTACTATATTCTTTACAAATATGTT
CCATTGTACAGAAGTAAAGTGTGTTAGTATTTAGTTGT-------GCGAAGCATCATAGTAAAAACAAATACCTCATCAG
GACTAACAAATGATTTAAATACTCCTAATCACAGTCATGTTGTTATCATTCATGTTGATGTCAACACATGTATAGCCGTC
GTCTTATCAACTGAGATTAGTAAATATCAGTAGGTCGCCAAACTCAAAATTCATAACCCAAACAATGTATAACGATAA--
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-----------------------------ACAATATCTATCTGCGACCAGTTGCAACAACAGGGAGGTAATACTGATGAT
CATTCATCAA-TTT-ATAATCAATCAAGAACCAACATGGTAAAATTTCAAAGAGCATATAGGCTACTTATATAAATAGAG
ATTAGAGACATACTTTCAATTCATTGCAACTGTAATCGCATCTTCACGGTGCGATC
>chr6D_1602
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---------------------------GG-CCAGGGCGAAAGCTAGACTCAAACGCCCTTAACATAAACACACACAAAAT
GA--ACGAAATATTTTAAATTGTCAGCTAAATAAAATATACTATTTTTTCTCTATATATTATATTCTTTACAAATATGTT
CCGGAGCACAGAAGTAAAGTGTGTTAGTATTTAGTTGTTTGTTGTGCAAAGCATTGTTGTAAAAACAAATACCTCATCAA
GACTAACAAATGATTTAAATACTCATAGTCACACTCATGTTGTTATCATCCATGTTGATATCAACATGTGTATAGCCCTC
GTCTTATCGACTGAGGTTAGAAACTATCGGTAGGTCGCCAAACTCAAAATTCATAACCCAAACAATGTATCTCTTCCTAA
TAATAAAGCAGTGACTGCTTCTGGTTGTCCGATATGTCTTTTTGCAGAAAACCCCCTGACTTTTCCAATAATTAACCCGC
AGTCCGTTGTAAGGTTAGAACAAACCATTTTTTTGCTGTTTACATAAAAACCCCTGGATTATACACTAATTAACCCGCAG
TCCAGATTTAAGGCACAGCGAATCGTTTTTTGCAGTTTTACATAAATGCCTCTGATACCTACGGTAATCACCCCGCAGTC
TATTGAAAATAAATATTTTCAAATAATCGTATCTTTAAACTGTAGCTCCCATTTTAACATGTTATATATGTTATTTGATT
TTAAAAATATGTAGAATCTGAATATGATGTTATCTTACAATATTTTTAAAATTATATTTAGGATATAATGTTAATCAATG
GCGTATGATCCGTCTTTATTTCATACCGACGCGGATCCGTATTGCAACATGTAAAATTGAACGTTAATAATTGGGAAAGA
TTATAATCCTTGGGCATGTTGTACTTGCCCAGGTTCTCTCTTTGTACAAGTTTCATGAGATAAGACCTTACGTACATACC
TTTTCTTTGCAAAATCCACGCGCATACTTACCATCGGACTACATTCTTTTTAGTAAATACACAAACAATTTTTATAGGAT
GTACATACACTTATCAAATTCATGAACATCAGAAGTACATGAATGTTTACTTCAAAAATATCCAAACTATTCGTGTGATA
GTCATGCACGTACATAGTGAAACCGATAAATACAATCTTAATTTGTGTTCCATCTGTTGCATATGATGGTGATACATGTA
GGCTTTCTTGTATAAACTTAATCTATAGACACAACCTCCTTAGTGTCAAACGACACCACAAAGGTGCTGACTGAGTGTGG
TTGTAGGTGCTTGCCATCAATATGACGAGTCAGAATCAAAGTTGCGCCGAAATGATAACGGCTTAGATAAAACTTTTTAC
TCCCGTTGCAATGCACGGACACATTTGCTACAGTATCTATCAGCGACCGGTTGCAACAACGGGGAGGTAATAGTGATGAT
TATTTATCAA-TTTTATAATCAATCAATGATCAACATGGTAAAATCTCAAAGGGCATATAGGCTACCTATATAAACAGAG
ATTAGAGACATACTTTCACTTCTTTGTAACTGTGATCGCGTCTTCAGGGTCCGATC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
--------------------------------S-----------------------------------------SS-SSS
SSS-------------------------------------------S---------------------------------
-------SSSSSSSSS---------------------------------------------S------------------
--------------------------------------------SSSS--S-----------------------------
----------------------------------------------------------S---------------------
--------------S--------------S--------------------------------------------------
----S-------S---------------------------------S----------------------------S----
--------S---------------------------------------------------------------S-------
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----------------------------------------------------------------------------SS--
-----------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
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-----SSSSSSS--------------------------------------------------------------------
----S-----------------------SSSSSSSSSSSSSSSSSSSSSS-------S-S---------S----------
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S------S--------------------S---S-S-SSS
SS---S-------------------S-----------S------------------------------------------
--------------------------------------------------------S-S---------------------
----------------------S------------------------S--------------------------------
-------------------------------S------------------------------------------------
---S--------S--------------S-S--S-------------S-------------S----------S-S------
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-----------------------------S---------------------------S--------------S-------
----------S---------------------------------------------------------------------
--------------------------------------------------S-----
>forward_20
AGGTGGTGTCTTGCATGACA------------------------------------------------------------
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>reverse_1271
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----------------------------------------------------------------------GTCTCTGCGT
TTCAAGTGGC----------------------------------------------------------------------
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