>input_sequence_87383
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-----------------------------------------------------------------------------ATG
GGGAAGGTGTGCTGCAGCAGCGAGTCGGAGGAGGAGGCGGGCTTCAGCTTCCTGGGGCTCCTCGTCGCGGCCGTCATCGC
CTTGGTGTTCATGCTCCTCTGCACGCCGCCGAAGCGGCGCTGCGTCACCATCTACCCGTGCTGTTGA-------------
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>chr1B_1_TraesCS1B01G247400
GGACCTAAGTTAAATGTGGTTAATACCCAAATTAAAGCATCA----TAGCCGTTACGGAGATAGAAACCACCGAAAACAG
TGTCAATCTCCTATTCTCCTGATAACAAAACCGTGTCTAGCTGAAGTTGGACTTCGCTTAGCTGAGCCAGGAAGCAAT-C
CTGTCTAGGAAGAAACTTCACGCTCGCTTGTCTTGTAGTGTTAGACGAAGCTGTAAGGCAACATGGCACAT---------
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-----GCCACTTGCTTGG------TCCTTCTTCAGTTCTTCCCCAAATTCCCAGAAAACCCTAGTCACCGACACGCAACA
TGCACCACCTAATCCCTACCACC---TCCTCAAATAGATAGAGACGGGGACGTGTTTCACATTCACACCGAGA----GCA
TGCACGCTACGTTCTCTCCATCGCCAATTCGCCATCACAATGCTATCGGACATATGGGGACAAGTAGCCATCAACTGTTT
GAATTTCACCAGGAGGATATCAGAATACCAGCCCTCTGATCCTGTACTTTTCATACATGTATACACATCACCATCGATCA
AGTATTGTTGTCCCCGTAATTTTCATCCGAATCGCCGTCAAGTGACCGCGTCCAGAAGATCACCAGCGAGAGACCGCGAC
GGCGCAAAGTTGAACAGCCATCTATCTAACATTCCATGCTGAAAGGCAGGCATAAAAGAAAGGCCAGATCTGTTTGCCAG
ATACTATGTATCTCAACATCTGGG-CAGTTGATCAGCCTAACAATGCCATATATGACCGGCGTCAGTGGCCTGGGTGGGT
GCGAGCATAGGCTGAGCTGTCCTCAGAGACGGAAGGGGAGCACAGGAGGGTGGCATCATTGAAGACCTGATAGCGATGCC
TCAACAAACTGGCCACACC-ACAGCGATCATGGCCGTGGTGGTATAAGAAGCAAAGAAGCGTACCACTGCTAGGAAGCGA
GCCTC---TCTTCGTCTGACCACCACTGATCTCCAGAGTAGGCAGCACCGGGAAGCAACCTTTCTGCTCAGGCTAGCATG
GGGAAGGTGTGCTGCAGCAGCGAGTCGGAGGAGGAGGCGGGCTTCAGCTTCCTGGGGCTCCTCGTCGCGGCCGTCATCGC
CTTGGTGTTCATGCTCCTCTGCACGCCGCCGAAGCGGCGCTGCGTCACCATCTACCCGTGCTGTTGAGGCTGAGGAGTCT
CCAAGGATCTCTGGTTGCTGGGAGGAAGG---TTCGGTTGTTCATGGGAGGGAGCAGGCCAGGCAATGGTTCCTGGTTTT
CTTCGGTTCAGAAATAATTTCTACACTACTGAATTGTAGGACTCGTCGAAACTGTAAGCCATATTTATCGGCA----TAT
TCGGCTGTCCATCTCCATCTGTAGCATGAACTGATACATACATCTGGGGGGAATAGATATCATCAGACTTGTTATGTTGT
TTTCACTTGTCCTGCTCCCTTCTCTCTTTCTCTCCTCTGTTTGTGTTTTGTTTTCTCTTTCAGATCTTTTTATATGATCG
TAACACAAAAGCACAGAAGATTGGCTATCTGTTGGCACATCCATGATGCAATTAAATAACAGAAAAGTTCAGTGATATTT
TTTTGGTGATCAAGTGGTTCTGTAGTGACTCCAA----------------------------------------------
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-----------------------------GAGGATGCACGTCTTAGTGCAAGTTCCAGTAGGAAAGCACTAACCAGAAAC
AGGGCTACAAAATAGTTCAAGATTAGACCAAAGATTCTACACTTCTTAGCTGATCTGAAAATTCTACTAGGCAGTCTGAA
GAAGACCATCATTCAACCGCTTGATTTTCTATTTATCAGTTACTGTAGATAATTGTCAGTGCATCTTAAGCGGCAGCAGG
AGCACCAGGCCGGTATTGCTTTGCGGCTCATGGTTATCTCTCTTTGTTTGTCTAGGATCTTTCCCCCGGAAGAATCTCAG
ACTCCAGTACACCTCTGTAAACTCCCCAGTCTCCAGAAGGGCCTCTATACCTGCAGAATGTCACCCCTTTTTCTGATTTT
TTCTCCTTTCGTATAATTTTCCAGGAATGTCTGCACTCTACAGATTCAGGAATCTTGCTTGCTAGTTTAACGGGGATCCA
TGAAGATCTGCTCAGTCATCAAGATCTCACTGGGTGCAACGATCTCTTCATGAACGCCCATTTCACACTTCAGTTCTATC
TTCTGAATTCCTGCACTGAAACTCCTTGC
>chr1D_1
GGACATAAGTTAAATGTGGTTAATAGCCAAATTAAAGCATAATATTTAGCCGTTACGAAGATAGAAACCACCGAAAACAG
TGTGAATC------TCTCCTGATAACAAAACCGTGTCCAGCTGAAGTTGGACTCAGCTTAGCTGAGCCAGGAAGCAATCC
CTGTCTAGGAAGAAACTTCACGCTCGCTTGTCTTCTAGTGTTAGACGAAGCTGTAAGGCAACATGGCACATTTTTTTTTT
AGAAAAGGAGGATGACCCCGGCCTTTGCATCTTGACGATGCATACAGCCATTTTATTAATTATTCTCACAAGATCTTACA
AAGTAATACCACAGTAAGACTAAAGCTGCCGTCTAAGCAACAAACTGTCACTACACCTATCCAGTTGATGAATGGGCGCA
GATAGCCTGGGCCTAATACCAAACAGACATCGCAGCAAACCTAACATCTAAGACCTGAGGACCCATCCAGGACGCCTGCC
GGGCATGGGTCTCGCCGGTCCGGCGTGCTCTCAAAGGCCGCCGCCGCCAACTGCCACCGCTCCATCTTCAGAACTGTACT
GATGCATCAACCTTGCTCGGTCTAGCTATCGTCGACGCCATCACGGCGCCCAACGGCACCTCCTCCCTGCGCGCAAACAG
CTGTGCACGTCGCGGTCGCCACTGATACACTTCAGCACCATGCTGCCGAGTACCACCACCCGACACAGCTTGAAGTCTTT
GAAAGATCTGTCGTGCGTAGCACCTGCTGACCAGACATGACAAAGCGTAGCACCTGTCGGTCAGGCATGACTTAACATGG
CACATGCCATTTGCTTGGGCTTGATCCTTCTTCGGTTCTTCCCCAAATTCCCAGAAAACCCTAGTCACCGACACGCAACA
TGCACCACCTAATCCCTACCACC---T---CAAATAGATGGAGACGGGGACGTGTTTCACATTCACACCGAGATCATGCA
CGCGCGCTACGTTCTCTCCATCGCCA--------TCACAATGCTATCGGACATACGGGGACAAGTAGCCATCAACCGTTT
GAATTTCACCAGGAGGATATCAGAATACCAGCCCTTTGATCCTGTACTTTTCATACATGTATACACATCACCATCGATCA
AGTATTGTTGTCCCCGTAATTTTCATCCGGATCGCCGTCAAGTGACCGCATCCACAAGATCGCCAGCGAGAAGCCGCGAC
GGCGTAAAGTTGAACAGCCATCTATCTAACATTCCGTGCTGAAAGGCAGGCGTAAAAGAAAGGCCAGATCTGTTTGCCAG
ATACTATGTATCTCAACATCTGGGGCGGTTGATCAGCCTAACAATGCCATCTATGACCGGCGTCAGTGGCCTGGGTGGGT
GCGAGCATAGGCTGAGCTGTCTTCAGAGACGGAAGGGGAGCACAGGAGGGTGGCATCATTGAAGACCTGATAGTGACGCC
CCAACAAACTGGCCACACC-ACGGCGATCATGGCCGTGGTGGTATAAGAAAGAACGAAACGTACCACTGCTAGGAAGCAA
GCCTCACTTCTTCGTCTGACCACCACTGATCATTAGCGTAGGCAGCACCGGGAAGCAACCTCTCTGCTCAGGCTAGCATG
GGGAAGGTGTGCTGCAGCAGCGAGTCGGAGGAGGAGGCGGGCTTCAGCTTCCTGGGGCTCCTCGTCGCGGCCGTCATCGC
CTTGGTGTTCATGCTCCTCTGTACCCCGCCGAAGCGGCGCTGCGTCACCATCTACCCGTGCTGTTGAGGCTGAGGAGTCT
CCAAGGATCTCTGGTTGCTGGGAGGAACG---TTCTGTTGTTCATGGGAGGGAGCAGGCCAGGCAATGGTCCCTGGTTTT
CTTCGGTTCAGAAAATAATTTCT-ACTACTGAATTGTAGGACTCGTCGAAACTGTAAGCCATGTTTATCGGTA----TAT
TAGGCTGTCCATCTCTATCTGTACCATGAACTG----ATACATCTGGGGAAAATAGATATCATCAGACTTGTTATGTTGT
TTTCACTTGTCCTGCTCCCTTCTCTCTTTCTTTTCTCTGTTTGTTTTTTGTTTTCTCTTTCAGATTTTTG-ATACGATCG
TAACAGAAAAGCCAAGAAGCTTGGCTATCTGCTAGCACTGCCAGGATGCAATTAAATAACAGAAAAGTTCAGTGATATTT
TGTTGGTGATCAAGTGGTTCTGTAGTGACTCCAGGAGGATTAAGGATGGCAATGGGTAGGGTATGGGTAGGGTAGAGCAA
TACCAAACCCATACCCATATAGTCAATGGGTATAAAATTCTACCCATACCCGTACCCATCGGTATGAAAATTTACCCATA
CCCATACCCAACAGGTACCCGTACCCATTGGGTACCCAGCGGGTAGAACAAATAGTATACAAGTTGTTCACAATTTTACA
CTCATTGGTAGCACATTTGACACAAAAAAACAATTATCTCAGCTGAATAACAGGTAGATGAGTACGTGACACTATCAAAA
TATGGAAATCACAAAATACTAATAATTCAATAGGAGTAGCTGAGTCACATGACAAATTAATGATTAATTGACAACAACTC
AACATTAATTCACCAGCGAGTAGGGTCTGGGTATACCCACAGGTACAAGGCTATACCCGTACCCTACCCATGACTTAACG
GGTAGGGTATGAGTACAACCCATAGGTATAAAAGTGTGCCCATACCCTACCCATGCGGGTACGGTACCCGCGGGTACCCG
TACCCATGAATAAAATTGCCATACTTAAGGAGGATGCACGTCTTAGTGCAAGTTCCAGTAGGAAAGCACTGACCAGAAAC
AGGGCTACAAAATAGTTCAATATTAGGCCAAAGATTCTACACTTCTTGGCAGATGTGAAAATTCTACTAGGTAGTTTGAA
CAAGATCATCATTCAACTGTTTGATTTTCTACGTATCAGT-----TAGATAATTGTCAGTGCATCTTAAGCCGCACCAGG
AGCAGCAGGCCGGTATTGCGTTGCGGTTCATGGTCATCTCTGTTTGTTTGTCTAGGCTCTTTCCCCCGGAGGAATCTCAG
ACTCCAGTACGCCTCTGTAAACTCCCCAGTC---------GCCTCTATACCTGCAGAATGTCACCCCTT-CTCTGAATTT
TTCTCCTTTCGTATAGTTTTCCAGGAATGTCTGCACTGTACAGATTCAGGAATCTTGCGTGCTAGTTTAACAGAGATCCA
TGAAGATCTGCTCAGTCATCAAGATCTCACTGGGTGCAACGATCTCTTCATGAACACCCATTTCACACTTCAGTTCTATC
CTCTGAATTCCTGCACTGAAACTCCTTGC
>chr1A_43
----------------------------------------------TAGCCGTTACGAAGATAGAAACCACCGAAAACAG
TGTCAA--------TCTCCTGATAACAAAACCGTGTCCACCAGAAGTTGGACTCCGCTTAGCTGAGCCAGGAAGCAAT-C
CTGTCTAGGAAGAAACTTCACGCTCGCTTGTCTTCTAGTCTTAGACGAAGCCGTAAGGCAACATGGCACAT---------
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-----GCCACTTGCTTGGCG------CTTCTTCAGTTCCTCCCCAAATTCCCAGAAAACCCTAGCCACCGACACGCAACA
TGCACCACCTAATCCCCACCACCACCT---CAAATAGATAGAGACGGGGACGTGTTTCACATTCACACCGCGAGCATGCA
CGCTACGTACGTTCTCTCCATCACCA--------TCACAATGCTATCGGACATATGGGGACAAGTAGCCATCAACCGTTT
CAATTTCAGCAGGAGGATATCAGAATACCAGCCCTTTGATCCTGTACTTTTCATGCATGTATACACATCACCATCGATCA
AATATTGCTGTCCCCGTAATTTTCATCCGAATCGCCGTCAAGTGACAGCATCCGCAAGATCGCCAGCGAGAGAGCGCGAC
GGCGCAAAGTTGAACAGCCATCTATCTAACATTCCATGCTGAAAGGCAGGCGTAAAAGAAAGGCCAGATCTGTTTGCCAG
ATATA---TATCTCAACATCTGGGGCAGTTGATCAGCCTAACAATGCCATCTATGACCGGCGTCAGTGGCCTGGGTGGGT
GCGAGCATAGGCTGAGCTGTCTTCAGAGACGGAAGGGGAGCACAGGAGGGTGGCATCATTGAAGACCTGATAGTGACGCC
CCAACAAACTGGCCACACCCACGGCGATCATGGCCGTGGTGGTATAAGAAAGAACGAAACGTACCACTGCTAGGAAGCGA
GCCTCACTTCTTCGTCTGACCACCACTGACCTCCAGCGTAGGCAGCACCGGGAAGCAACCTCTCTGCTCAGGCTAGCATG
GGGAAGGTGTGCTGCAGCAGCGAGTCGGAGGAGGAGGCGGGGTTCAGCTTCCTGGGGCTCCTCGTCGCGGCCGTCATCGC
CCTGGTGTTCATGCTCCTCTGCACCCCGCCGAAGCGGCGCTCCGTCACCATCTACCCGTGCTGTTGAGGCTGAGGAGTCT
CCAAGGATCTCTGGTTGCTGGGAGGAAGGTTATTCGGTTGTTCATGGGAGAGAGCAGGCCAGGCAATGGTCCCTGGTTTT
CTTCGGTTCAGAAAATAATTTCT-ACTACTGAATTGTAGGGCTCGTCGAAACTGTAAGCCATGTTTTATCGGTATATTAT
TAGGCTGTCCATCTCCATCTGTAGCATGAACTG----ATACATCTGGGGAAAATAGATATCATCAGACTTGTTATGTTGT
TTTCACTTGTCCTGTTCCCTTCCCTCTTTCTCTCCTCTGTTTATTTTTTGTTTT-TCTTTCAGATTTTTG-ATATGATCG
TAACAGAAAAGCATAGATGCTTGGTTATCTGTTAGCGCAGCCAGGATGCAATTAAATAACAGAAAAGTTCAGTGATATTT
TTTTGGTGATCAAGTGGTTCTGTAATGACTCCAGGAGGG-----------------------------------------
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----------------------------------TGCACGTCTTAGTGCAAGTTCCAGTAGGAAAGCACTGATCAGAAAC
AGGGCTACAAAATAGTTCAATATTAGGCCAAAGATTCTACACTTCTTAGCTGATCTGAAAATTCTACTAGGCAGTCTGAA
GAAGACCATCATTCAACTGTTTGATTTCCTATTTATCAGTTACTGTAGATAACTGTCAGTACATGTTAAGCCGCACCAGG
AGCACCAGGCCGGTATTGCTTTGCGGTTCATGGTTATCTCTGTTTGCTTATCTAGGCTCTTTCCCCCGGAAGAATCTCAG
ACTCCAGTACACCTCTGTAAACTCCCCAGTCTCCAGAAGGGCCTCTACACCTGCAGAATGTCACCCCTT-TTCTGAATTT
TTCTCCTTTCACATAATTTTCCAGGAATGCCTGCACTCTCCAGATTCAGGAATCTTGCTTGCTAGTTTAGCAGGGATCCA
TGAAGATCTGCTCAGTCTTCAATATCTCACTCGGTGCAACGATCTCTTCATGAACACCCATTTCACACTTCAGTTCTATC
CTCCGAATTCCGGCACTGAAACTCCTT--
>SNPs
----S--------------------S--------------S----------------S----------------------
--------SSSSSS-----------------------S---------------S--------------------------
----------------------------------S---------------------------------------------
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---------------------------SSS--------------------------------------------------
S--S----------------------SSSSSSSS-----------------------------------------S----
-----------------------------------S--------------------------------------------
-------------------------------------------------S----S------S------------------
---------------------------------------------------S----------------------------
--------------------------------------------------S-----------------------------
---------------------S---------------------------------------------------S--S---
S---------------------S---------------------------SS--S---S---------------------
------------------------------------S------------------------S------------------
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------------------------S-------------------------------------------------------
----------------------------------------------------------------------S---------
--------------SS-S--SSSS--------------------------------------S--------S--------
-S-------------------------------SSSS------------SS-----------------------------
--------------------------------------------S--------------------S---SS---------
-----S-------S-----S-------------S-----S---S------------------------------------
---------------------------------S----------------------------------------------
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----------------------------------------------------------------------S---------
--------------------S-----S-----------------------------------------------------
-----------------S-S---------------------------------------------------S---S----
--------------------------S--------------S--------------S-----------------------
---------------------------------------------------------------------S------S---
-----------------------------------------------------------------------S--------
-------------------------------------------------------S------------------------
S----------------------------
>forward_964
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----------------------------------------------------------------ATTCACACCGAGAGCA
TGCA----------------------------------------------------------------------------
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>reverse_1922
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-CGGCTGTCCATCTCCATCTG-----------------------------------------------------------
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