>input_sequence_87378
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-------------------------------------------------ATGGCCCACATATCAGATATT----------
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-----------------------------------AAACTGATAAGAACAGATA--------------------------
------------------------------------------------------------------CTACACTTGATCTT
AGCCAAAAGGCCGAGAAAGGTATGCTTCAAAAGGTTGCCGTCCGCCTCTTCTTATTGCTCTCTCAGCTGCCCGTGCTGCT
CGCACGGGCGAGGTGGTACTAA----------------------------------------------------------
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--------------------------------------------------------------------------
>chr6D_1_TraesCS6D01G086700
CTTAGCAAATTTTAGGGGGGAGAGGCTGGTGCATGCCTGCTTTGCCCGACGAATCATCTACACTATGGAACAAAAAAAGT
TAACCGCAGAACTGCAGCAGCTCCGGCTTCTGCTGTGTCTATCTATATGCTTATACTCCCTCCGTTCGGAATTACTCGTC
CAAGAAATGAATGTATCTAGATGTATTTTAGTTGTAGATACGTTCATTTTTGTGACAAGTAATTCTGAATGGAGGGAGTA
TATCGTA--TGTGTATGTTGTTCACTTGATTGTGTAGTACATGTGCTGGAATTTGGCGAAGAACACCAGCCGGTGC-CTC
CCTGGTTACATTTCTTTCTTCGCCAGAGGCTGGCACATGTTCGTGGACCTTGCTGTAGCTCTTATGGCCTAGGTGCTGCC
ATGTTCCCATCTCACAAAACTCGAATTTAAAAGGTTTGAAAAATTCCAAAAAAG--ATGTGGTTGTTCACAAGATATGTG
TCTACAATCCTTGAAA-TTTTAGATCCAAATTTAAAATACACGTAGCCTTTGCTATTTTTTGAGGCACCTGGCATTATAT
TGTCCAACCCTGAAG------------------------------AACTAAGAATGTGCAGTGGTATGCTCGATTATGTT
CAAAATGGCTGAAATAAAATAGCCTTGTATAATCAACCAAATCATGTGCATGAAATCTGAA-------------------
---------------------------------------------------------------------------TAGTT
GAACCATCCTTGTTTTCTGATGC--------------------------ACTTGGCAACAAGAAAAGAATCTAACA----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------GATTGATGTAACCTATTAAAACTAAAATTTA---TTTGCTTAGAAGAC----TATAAATTGTTTACT
TCGTATTGGTTGGGGTGCGCCTAGCCTGGGCAGTAGTGCAACGCCCAGGCGACACATGACGGCCCCAATGGCAAGCCATT
GTGATGGACCCTCCA-CATAAAAAATAAATTTAATATCATTGTGGAGACATGGCCCACATATCAGATATT----------
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-----------------------------------AAACTGATAAGAACAGATACTACACTTGATACCCTCCACATAAAA
AATAAATTTAATATCATTGTGGAGACATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTT
AGCCAAAAGGCCGAGAAAGGTATGCTTCAAAAGGTTGCCGTCCGCCTCTTCTTATTGCTCTCTCAGCTGCCCGTGCTGCT
CGCACGGGCGAGGTGGTACTAATCAAACAGCAGCGCATTAGATACCTGCCTCTGT-------------------------
--------------------------------------------------------------------------------
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--------------------------------------------GCTTCCACGTTGATTTTACCATAGCAGCCCAGATGC
CTTGAAGGCCCAATAGCTCAGCTTAATTCGTACCCATGGCCCAATAGCGTGGCTTCTCTCTATTC-----------ATAT
CAACCTGGAATGCCT-----AAAAAAAATCAACCCGG---AAAACAGAATAAAAGCAAAAGTTTTGTCATTTGCGTGTGC
AGAGATTTAACTTCAAGATTTTGACAAGATTTTGCGTGTGCAGGGATTTAACTTCGAGATTTTGAT--GGACGTGTCAAA
GCTATTAAAACGACA-TAACTCCAGTTAGCGGCCTGAGACCATGATGGGGCGTGGAATAATGGAGTTCAAA-AAATGTTG
GCAGCTGCACAGCATATATGCCAGTTCAGTGTGCTGTGTGCCGTATCCGTACAGTTACAGAGTGCCATCCACTCGCTTGC
AATTTTTTTATGAGGGAACATCAGTAGGTGATTCCCTAGTGCAAAATCTTACGTATTTACTCCCTCCGTTCCAGTTATGA
AAGCTAGCATCCAGCATCTATAGAGGTTCATCTCTTACTTAAAAATTCTTCTACGTCTGTAGAGATTAGGTTGCACTCCT
CTGAAGGTGAAGTCGTTCCTGCAAACTAAATGCTCCCGGCTGCTAAAGGCAACTCCAGCGCAGATCAAACTGCCCGGGCT
CCGGACGTCCGAAACACCATAAACCGGCTCCAAATCGAGGGGGAGGTTTGGAGTCTGAACATCCGTCACGTTGGACTCCG
AAACCCCGGGCCACCCAAAAACCCCATTCAAAGCCCTCATTTTTTTTCAGTTCGTTCCTTCTGTCTATGTATCCATGCTC
TTAGGGTTCGCTGCCGCTGTTGTACCACCCTGGCCGCCGCCCAAGGCTTTGCCAGACCTCTGTCACTCCACCCAACGCCT
GCCTGCCTTGTCCTACGCAGTCGAATCTAGATTCGGACGCCGACCAGGTACCCTCCGCCACTGCTGACGTCGTC
>chr6A_239
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TA
TGTCGTATGTGTGTATGTTGTTCACTTAATTGTGTAGTACATGTGCTGGAATTTGGCGAAGAACACCAGCCGGTGT-CTC
CCTGGTTACATTTCTCTCTTCGCCAGAGGCTGGCACATG-TCGTGGACCTTGCTGTAGCTCTTATGGCTTAGGTGCTGCA
ATGTTCCCATCTCACAAAACTCAAATTTAAAAGGTTTTAAAAATTCCAAAAAAG--ATGTGGTAGTTCACAAGATCCATG
TCTACAATCCTTGAAAATTTCAGATCCAAATTTGAAATACACATAACCTTTGCTATTGTATGAGTCACCTCGCATTATAT
TGTACAACCATGAAAGTGTATCTATTGCTCTGGCGGGAACCATGAGACTAAGAATGTGCAGTGGTGTGCTTGATTCTGTT
CAAAATGGCTGAAGTAAAATAGTCTTGTA--ATTAACCAAATCATGTGCAAGGCATCCATTGAAAGGG--TATAGCATTT
GATCAATCAGTATAGGAAAACAATCTCAGACATTCATAGGGAAATCTATTCAGACAATGCTCCCAAGTGAAAAGGTAGTT
GAATCATACTTGTCTTCTGTTGC--------------------------ACCTGGCATCAAGAAACAGATTTAAGGAATT
GAAGTGATTGATATAACCCCAGTGCATGTAGCTCCCGCTTGCGCAGGGTCTGGGGAAGGATCTGACCACTTTGGGTCTAT
TGTACGCAGCCTTTCCCTACATTTCTGCAAGAGGCTGTTTCCAAGACTTGAACCCGTGACCTCATGGTCACAAGGCAGCA
GCTTTTTCGAAGTGATTGATATAACCAATTAAAATTTAAATTTA---TTTGCTTATAGAAGACTATATAATTTGTTTAC-
TTGTATTGGTTGGGGTGCACCTAGCCTGAGCAGTAGTGCAATGTCCAGACAACACATGAGGGTATCAATGGCAAGCCATT
ATTATAGACCCTCCCCCATAAAAAATAAATTTAATATCATTGTGG-CACATGGCCCATATATCAGATGTT----------
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-----------------------------------AGACTAATAAGAATAGATA--------------------------
------------------------------------------------------------------TTACACTTGATCTT
AGCCAAAAGGCCGAGAAAAGTATGCTTCTGAAGGTTGCCCTCTGAAGGTTGCCCTCCG---CTCAACTGACCGTGTTGCT
TGCACAGGCGAGGTGGTACTAATCAAACAGCAGCGCATTAGATACCTGCCTCTGC-------------------------
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--------------------------------------------GCTTCCACGTTAATTTTACCATAGCAGCCCAGATGC
CTTGAAGGCCTAATAGCTCGGCTTAATTCGTACTCATGGC----------------------------------------
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>chr6A_239
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------------------------------------------------------------------------------TA
TATCGTATGTGTGTATGTTGTTCACTTGATTGTGTAGTACATGTGCTGGAATTTGGCGAAGAACACCAGCCGGTGCCCTC
CCTGGTTACATTTCTTTCTTCGCCAGAGGCTGGCACATG-TCGTGGACCTTGCTGTAGCTCTTATGGCTTAGGTGCTGTC
ATGTTCCCATCTCACAAAACTCAAATTTAAAAGGTTTGACAAATTCCAGAAAAGATATGTGGTTGTTCACAAGATATCTG
TCTACAATCCTTGAAAATTTCAGATCCAAATTTGAAATACACATAACCTTTGCTATTGTATGAGTCACCTGGCATTATAT
TGTACAACCATGAAAGTGTATCTATTGCTCTGGCGGGCACCATGAAACTAAGAATGAGCAGCGGTGTGCTTGATTCTGTT
CAAAATGGCTGAAATAAAATAGTCTTGTA--A-TAACCAAATCATGTGCAAGGTATCCATTGAAAGGG--TA--GCATTC
GATCAATGAATATGGGAAAACAATCTCACACGTTCACAGGGAAATTTATTCAGACAATGCTCCCAATTGAAAAGGTAGTT
GAACCATCCTTGTCTTCAGCCTTATGATGCACCTGGCAACAAGAAACTTAG---------------GAATCTAATC----
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-------------GATTGATATAACCAATTTAAACTAAAATTTAATATTTGTTTAGAAGAC----TATAATTTGTTTACT
TTGTATTGGTTGGGGTGCGTCTAGCCTGGGCAGTAGTGCAACGCCCATGCGACACATAAGGGTCCCAATGGCAAGCCATT
GTGATGGACCCTCCATCATAAAAAATAAATTTCATATCGTTGTGGACACATGGTTCACATATCAAATAAATTCCAATCTC
GCAACATGATATGCCAGATTTTATTGCTTGGAGTTATACGAAAAATGATATGTTGTCGGTCCGGTCTGCTTATTTTGTGG
AGTGGGACCATCAGTATGGAAGTAGACTAAAACATTCTAATGGGATGGGGCGAACCACAGTTAATCCTATTTAGAGTAAG
ATATGGAAATTATCATGTCCGGCAAAAGTTAAAATTTTTATATGGCGTACATTACATGGAACACTTCCATGCCGGGTTAC
GCTGGCAAATAGACATATGAAGGTCATGCTCATTTGTCCTACTTGCTTTGAGGGTTCTGAAAATACAAAGCATATGCTTT
TCCTTTGCAGTAGAGCAAAGGAGGTTTGAACAAGGCTGGGGATGAATGATATCATTGATAAAGCTTGCGAGGTTGACCTT
ACTGGAGAGGCGGTGTTGGAGTACCTACTACGTCTGCCAGACCAAGAATTAAGGATAATGGGTTATCACAATGTGCGTAA
AATGATTGCTGTCTCAGCATGATATTTATGGTGGGAAAGACGGAAGTTAGTGCACAAAGAGACAACTCAGAATGCACTTC
AGATTTCAGTAGGGATTCTAGCCCTTACGTCAAACTTCGTAAATGCATCATCCCTCAAGGCTTCTATGAAAAAGGGGGGT
TGGTCATGTCCTCCTAGGGGTTTTGTGAAACTTAACGTTGACGCTTCTTTTGATCACGACCTGCTTAGGGGCACGATGGG
GGCGATTTTGAGAGATGAAAAAGGTAGTTTATCGCGGGAGGGAACGGAAAGATTGACTACTGTGCAGATGTGTTGATGGC
GGAAGCCTCAGCTCTTAAATTTAGTATAACATTGGCGCAAAGGGCGGGATGTAATCACCTTATTATTAAGGCAAACAATC
TGGAGAAGATTGATACCATGAATAACAGAGGACAGTCGGCATGTGCGGCGGCGGCAATTTTCGACGACTGTTTTCATTAT
GCTTGTGACTTCGTTGCTACTAGATTCGAACATTGTAATAGAGAAGTAAATAAAGTAGCTCACGAGCTTGCGAGTTTAGC
TAGATTTTCATTGATTTCTAATTGATTTGAGAAACCTTTAAATGAAATTGTAATGATCCTCACAAATTATGTACTTTTTA
TTTCTAATGAATAAAGTTTTCATTTATCTCAAAAAAAGCTGATAAGAACAAATA--------------------------
------------------------------------------------------------------CTACATTTGATCT-
AGCCAAAAGGCAGAGAAATGTATGATTTGAAAGGTTGCCCTCCGCCTCTTCTTATTGCTCTCTCAGCTGACCGTGCTGCT
CGCACCGGCGAGGTGGCACTAATCAAACAGCAGCGCATTAGTTTTTTTTTTTTGAGACAATCAGCAAAGCTTTATTGATT
CGTCACATAATTTACATGAACGAAATGAAGATCCTCAGGGTGGCCCAACCAAACATGACGACCAAGCCCCAGTTTTAGTG
CATGCTTTGCTAGATTATGAGCTTCGACATTCGAACTCCTAAATTCATGAACAAAATTACACAAAGTAAAACTAGTAGAG
TACTCTAGTATTTAATGTACAATAGCCCCATAGCCAACCCCACTTCTCCTCTTGATGTCATCTATCACCACCGAGCAATC
TGAAGCCACCTGAATAGCTTGTAGGTTTAGATCCTCCGCCAATGCCATGGCCTCCCTCACCGCTAGAGCTTCCAGAGTCG
TGGGATCAACTATACCTCTGAATACCACGGATGAAGCACCTAGATAGAGTCCTTGCCTATTCCTGCATATCGCTGCCACT
GAACCGACTCCTCGACATCCCCTCACCGTAGCATCTACATTCACCTTCATCAAATTTTCCGGCGGTTGGATCCAGTTGGA
CGGCCTCGCCGGCCTGGTCTGTGAATGCTGGATGTGTGGCTTCTTTAAAACTTGAAGATCACTCCAATAGGACCGAATAT
ATAAGTGTGTTGACATTGGGCTTTGAAAGATGTCTTCATAAACTACTTTCCTTCTCGCTCCCCATATAGCCCATAACGTG
ATCACCATGCGAACTAGCTGGTCATGCGATAATTTGCTGTTTATTTGGAAGATCCAGTCCTTCGCGTTGTGGCTTTCATT
CTGACACATCACCTCCACAATTTCTTCATCAGCTAACGCCCACACACTCCGAGCCATCGAGCAGTTTATAAGCGCATGTC
GCCAAGAATCTCTTGCGCCGCATAACCTGCATGCCGCCGATGTAGCTTCCACGTTGATTTTACCATAGCAGCCCAGACGC
CTTGAAGACCCAATAGCTCGGCTTAATTCGTACTCATGGCCCAGTAGAGTTGCTTCTCTCTATTCCTCCTATTCATATCT
CAACCCGGAAGTTTCTCAAAAAAAAAAATCCCAACCTGGAAAAACAAAATAAAAGCAAGGATTTG----TTTCCGTGTAC
AGGGATTTAACTTCAAGATTTTGACAAGTTATAAGAG------------AACTTCGAGATTTTGATATGGACGGGTCGAA
GCTATTAAAACAACATTAACTCCAGTTAGCGAGCTGAGACCGTGATGGGGCGTAGAACAATGGAGTTCAGAGAAACGTTG
GCAGCTGCAGAGC-------------------------------------------------------------------
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>chr6B_239
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------------------------------------------------------------------------------TA
TATCGTATGTGTGTATGTTGTTCACTTGATTGTGTAGTACATGTGCTGGAATTTGGCGAAGAACACCAGCCGGTGCCCTC
CTTGGTTACATTTCTCTCTTCGCTAGAGGCTGGCACATG-TCGTGGACCTTGCTGTAGCG--------------GCTGCC
ATGTT-CCATCTCACAAAACTCAAATTTAAAAGGTTTGGAAAATTCCAAAAAAGGTATGTGGTTGTTCACAAGATATCTG
TCAACAATCCTTGAAAATTTCAGATCCAAATTTGAAATACACATAGCCTTTGCTATTGTATGAGGCGCCTGGCATTATAT
TGTCCAACCCTGAAAGTGTATCTATTGCTCTGGCGGGCACCA--------AGAATGTGCAGCGGTGTGCTCGGTTCTGTT
CAAAATGCCTGGAATAAAATAGCCTTGTACAATCAACCAGATCATGTGCAAGGT------TGAAAGGGTATA--GCATTT
GATCAATCAGTATAGGAAAACAATCTCACACATTCTTAGGGAAATCTATTCAGACAATGCTCAGTG----AAAGGTAACT
GAACCATCCTTGTTTTCTGTTTC--------------------------AG---------------GAATCTAACC----
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-------------GATTGATGTAACCAATTAAAACTAT--TTTT---TTTGTTTAGAAGAC----TATAAATTGTTGATT
TTGCATTGGTTGGGGTGCGCCTAGCCTAGGCAGTAGTGCAACTCCTAGGCAACACATGAGGGCCCCAATGGCAAGCCATT
GTGATGGACTCTCACCCATAAAAAATAAATTTAATATCATTGTGGGCACATGACCCACATATCAGATATT----------
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-----------------------------------AAACTGATAAGAACAGATA--------------------------
------------------------------------------------------------------ATACACTTGATCTT
AGCCAAAAGGCCGAGAAAGGTATGCTTCTAGTTGTTGCCCTCCGCCTCTTCTTATAGCTTTCTCAGCTGACCGTGCTGCT
CGCACGGGCGAGGTGGTACTAATCAAACAGCAGCGCATTAGAT-------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
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---------------------------------------S----------------------------S-----------
----------------------S------------------------------------------------------S--
--------------------S------------S--------S--------------S-S--------------------
--------------S--------------------------------------------------S---------S----
-----------------------------S--------------------S-SS---SSSS-------------------
--------------------------------------------------------------------------------
-------------------S-------------------------------S-----S-------S---------S----
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--------------------------S-----------------------------------------------------
-S---------------------------------------------------------S--------------------
----------------------------------------------S---------------------------------
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------------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------
----------------------------S----------S-----------------------------S----------
------------------------------------------------------S-------------------------
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-------------------S-------------S---------S---S--S---------------------------S-
-----S----SSSSS---------------SSSS-SS---------S-----------SSS---SSSSS---S-----S-
--S-------------------------S-S-SSSSSSSSSSSSSSSSS------------------------S---S--
-----------S-------------------SS--------S-----------S---S-----------S-----S----
---------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_58
--------------------------------------GCTTTGCCCGACGAATCATC----------------------
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>reverse_2494
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-------------TCATTGTGGAGACATGGCCC-----------------------------------------------
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>forward_122
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----------------------CCGGCTTCTGCTGTGTCTAT--------------------------------------
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>reverse_4457
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--------------------------------------------------------CCTCTGTCACTCCACCCAAC----
--------------------------------------------------------------------------
