>input_sequence_87373
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------ATGTCGCTGGGGGCGGTGTTCCACGGCGCGCAGCTGATGCTGGATCTGGCGGTGGCCGGGCT
GTCGCTGATGTTCGCGCTCGGCCTCTTCGCCGTCGTCACCACCGTGCTCTGCTCCACCGCCTTCCTCCACCACTCCAAGC
CCATCGCGTCGTAG------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------
>chr5B_1_TraesCS5B01G248800
GCAAGGCACGGCCACGCCGACGCCGCGCAGCAGCCGCGCGCCGCACCGCCAGCTCAAGCCACCGCCAGGGGAAGCCGCCG
TCGCACGGGCTCTAAATCCGCCACCGCCTCCTGTCGTCGTCGGAGGAGAGGAAGAGGAAGGGGAAGACCCAGTCGTCGTC
GTCCGCCTCCCGGGCTTAGCCCGGCGGACTCTTTCGGCGACGGCGAGGGGAGGGAGGGGGGCGGCCCGGCAGCGCGGACG
AGGGCTCTGCCCGAGTCGCTAGAGAGGCGACGCGGGGGACGAGTGGTAGTACTCCTCATTTTTAAGTCTTTGACTTGTGA
GGACACGAGTGCTTGAATTTTACCGGATTTATTTCAGTCTTTTTGATACTACTCCCTTCGTTTCTAAATATAATCCCTTT
TAGATATTTAAATACGAACTACATACGTATGTATACGGGCATATTTTAAAGTATAGATTCACTCATTTTATTTTATATGT
AGTCCATATTAAAATCTCTAAAAGATCTTATATTTAGGAAGAG-AGGAGTATTTCTCTGGTGGTATGACATGCTTCTCAA
CTCCAGGTGTCTCTCGTAATTTTATTAATCTCAAGTTTACTAGTCAATCTTTCGAAAGTGCTCATAGTGATGTGTGTATG
TCAACTTCTGGTCAATACTGTGTTTCCCAAAAGGAACATTTTTAAGAGAAAAAAATGTGTG-------TCTTATATTTTC
GAAACTTCTACGGAAAATAAAAACTACGA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AAAAATA----TATCACATTTCCTGATTTCCATGTGATC
GTTGTGCCACTGACTCACGGTTCACAGATG---------------------GCACGAGCGCTCGTCCAGGTGGTCGGCTC
GCCGCCTCCCCTTCTGCCCCCGCCGCGCCGCGTGTCCCGCCGCTTCTCTT---CCTCCTCCTCCTCTGGCTCTGTCCGCC
TCTCCGTTGCCGTGATATAGCCACGGGCTTTCTCCGAGAAGAGCGCGTCGCGGGCGAGGCGAGG-----GGTCG-----G
GGAAGGGAAGGGAAGAGGATGTCGCTGGGGGCGGTGTTCCACGGCGCGCAGCTGATGCTGGATCTGGCGGTGGCCGGGCT
GTCGCTGATGTTCGCGCTCGGCCTCTTCGCCGTCGTCACCACCGTGCTCTGCTCCACCGCCTTCCTCCACCACTCCAAGC
CCATCGCGTCGTAGCCGCGGGCCGCCTCCCACAAAGTCCACGAACCCCTCGGCACATCCTAATCGTAAGCCTGATTTCTA
TCCAGAATTTCATCGGTTCATTTCAATTCAAATCCAAGGTTGTGCCG-----------------TGGAGTGTAATGCGGT
GGAATTGATTTGTTT-GCACTGTAGTTTGTGAATTTTGGATGGAATCGAAGAAACAATGTGCTCGCTCGACATGTTCATG
CTTCCTGACTGGCTATGTGGATAGGTATGGCCGTATGGACGATGCCACGATGGTTTGAGTAGGAGCACGTCGTCCTACTT
GGAATCCATGGAATTGACATTTAGCAGGATTCCCCTAGCATTGTTTTTTTTTCTT-------------------------
-CCCTGACCCTTGTCACCACA----TTTTAGCATTTATAACTAAAAAATGTGCCATGTGAAGTATATTTGCTGAGGATGC
ATTTTGTGTTTAGTCTCACAAATTAATGTGGCAGGTTAGCTCCCCTCGTTGTCCTAGCCTTGTTGTGATTGATTACTTGT
AGAGGGC----------TCCAAGCTGGAACACCCTGGACTGATATTCCCTGAAGATTGTGCCTGCTGTTTC-GTTGTTTC
TGAGAATATCTGGTGTGAGATTAGGCATGATAGTAATCTGGGTGATTAGGAATCTTTCTTTTGGGGGCCTTGAGCTGGCT
ACTGATGGTTTTGAATGAAGTGACTTTTATGTGTTTGGTCAGAAAAAATAGCATCAGAAAGCTACAGCTAA-GGTCTTAG
GTCTTGTTTGGCCACCCCTGAGTGAAATGACTTAAAGTTAGGGATTTCACAAATCACCATCCTCGCCTACTTTGGATAAC
TGTAACTTTCACAATGAAACATCAACTCGACGGCCAAAACCATGGTTTTTAACATGCATATCTGCTGTAAGGCCTATCGA
AATTGATTGTGCACAGTGCTCACCTTCATCTGAA-------ATAACTCAATCACCTCTTTCGCAGTTTTGCTTTACCCTG
TCTTTGCTAGTTCAATCGAACTCTTTAGCATATGTACCAAC
>chr5D_303
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TAAGTCTTTGACTTGTTA
CAACACGAGTGCTTGCATTTTACCGGATTTATTTTAGTCTTTTTGATACTACTCCCTTCGTTTCTAAATATAAGACCTTT
TAGAGATTTAAATACGG-----------ATGTATATAGGCATATTTTAAAGTATAGATTCACTCATTTTGCTCCGTATGT
AGTCTATATTGGAATCTCTAAAAGGTCTTATATTTAGGAACAACAGGAGTATTTCTCTGATGATATGGTATGCTTCTCAA
CTTCAGGTGTCTCTCGCGATTTCGTTAATCTCAAGTGTACTGGCAAACCTTTCGAAATTGCTCATAGTGATA--TGTACG
TGAATGTCTGATCAATGCTGTGTTTAAAAAAACA-----TTTTAAGAGAAAAACCGTGTCCATATTGCTCTTATATTTTC
GAAACTTCTATGCAAAATAAAAATTACTACCTCCGTCTCGGTGTATAAATCATTCGTGTAGTTTTAGGTCGACAATTTAA
CTATCTAAATATTTATTATATGTGATAAAAATATATATTTAGAAACTAAATCCGTGTAGAAATCTGGTGATATACTTTTC
ATGACGTATAATACATATTTAATTTCTCAAATCGATGACCTAGGACTACGCAAATGACTTAGGATGGTCATAGTGGGGAG
TAACTTATACTAGTGTCATGCATATGACACTAGTCTAAGTTACTACCTCCATAGTGCAAAATAATATAGTAATAGTATCA
TAGATGGCTTCATTATTACCTTCCAGACTCATTCTTTCTCGGGCAGCGCTATGTTACAGCAACATGTTATGTTACTCTAA
ATACCTCTCTCCTCATTAACTACATGCCACATAAGCAAAATTTTCTTGGAATGCGCTATGTTACTACCTAAGGCTGGTCA
TAGTGGAGAGTAACTTATACTAATGTCATGCCTCCATAGTGCAAATTAACATAGTAGTAGTGTCATAGGTTGCTTCATTT
ATTAGCTCATAGACTCATTTTGCCTCGGGAAGCGCTATGTTACAGTAATATACTCCCTCATTTCCGGTTTATAGGGCTTA
ATTCAAAAATCTCACGAACCAAGGTAGATGGTGAGTGGTGGAATATTTTTTGTAGCTTGCAACCAATTAATGCTCTTGTT
TTCCTAAAAAAGTATGTTTACCAATGCATTAATTGCAATGCATGCATGCATAAAGTACATGCATTGGTCAATTTTCTTTT
AATACTTGCATTCAATGATTTAATGCACCTTGAAATCTGAACTTGTAATGAAGAACAATCAAATAGAGCCTTATAAAATG
AAAAAACTAAAATTTTAAGATAAGCACTGTAAACCGAAAAGGAGGGAGTATTATGTTACCACAAGCATCTCTTTCCTTAT
TAAATACTTGCCACATAAGCAAAATTGTCTTGGGATGTGTTAAATTACTACCTAAGTTACCCTACTATGGCTAGCCTAAG
TTACTCCCACTATGACTAGCCTTATTGACGGAGATAGTACGAAAAAAA----TATCACATTTTCTGATTTCCATGTGATC
GTTGTG--------TCCCCCTAAAAAAAAGTGATCGTCGTGTCACGGTTCAGCACGAGCGCTCGTCCAGGTGGTCGACTC
GCCGCCTCCCCTTCTGCCCCCGCCGCGCCGCGTGTCCCGCCGCTTCTCCTCCCCCTCCTCGTCCTCTGGCTCTGTCCGCC
TCCCCGTTGCCGTGATATAGCCACGGGCTTCCTCCGACAAGAGCGCGTCGCAGGCGAGGCGAGG-----GGTCGGGGAAG
GGAAGGGAAGGGAAGAGGATGTCGCTGGGGGCGGTGTTCCACGGCGCGCAGCTGATGCTGGATCTGGCGGTGGCCGGGAT
GTCGCTGATGTTCGCGCTCGGCCTGTTCGCCGTCGTCACCACCGTGCTCTGCTCCGCCGCCTTCCTCCACCACTCCAAGC
CCGTCGCGTCGTAGCCGCGACCTGCCTCCCACCAAGCCCACGACCCCCTCGGCGCATCCTAATCGTAAGCCCGATG----
TCAAGAATTTCATCCGTTCATTTCAATTCAT-TCCAAGGTTGTGCCCTCGACGATGAGAAATACTGGAACGTAGCGCGGT
GGAATCGATTTGTTTAGCACTGTAGTG-GTGAATTTTGGATGGAATCAAAGAAACAATGTGCTCGCTCCACATGTTCATG
CTTCCTGACTGGCTATGTGGATAAGC--------ATGGACGACGCCACGATGGTTTGAGCAGGAGCACGTTGTCGTACTT
GGAATCCATGAAATTGACATTCAGCACGATTCCCCTAGCCTTGTGTCTTGTGTTACATTACTTCAGAGTCCGCACCATTT
CCCCTGACCCCTGTCGCCCTAACATTTTAAGCAATTTTTACTGCCAAATGTGCCATGTGGAGTACATTTGCTAAGGCTGC
ATTTTCTGTTTAGTCTCACAAATTAATGTGGCAGGTTAGCTCCCCTCGTTGTCCTAGCCTTGTTGTGATTGATAGCTTGG
TAGAGGACTCCAAGGAGTCCAAGCTGGAACACCCTGTACG---ATTCCCTGAAGATTGTGCCTGCTGTTTC-GTTGTTTC
TGAGAATATCTGGTGTGAGATTAGGCATGATAGTCATCTGGGTGATTGGGCATATTTCTTTTTGCGACCTTGAGCTGGCT
ACTGATGCTTTTGAATGAAGTGGCTTTTATGTGTTTGGTCAGAAAAAATAGCATCAGAAAGCTGCAACTAAGGGTCTTAG
ATCTTGTTTGGCCACCGCTGAGTGAAACGACTTTAAGTTGGGAATTTCACAAATCACCATCCCTGCCTACTTTGGGTAAC
TGTAACTTTCACAATGAAACATCAACTCGACAGCCAAAACCATGTG----------------------------------
AATAGATTGTGCCCAGTGCTCACCCTCATCTGAATTCTGAAATAACTCAATTATCTCTTTTGCAGTTTTGCTTTACCCTG
TCTTTGCTAGTTCAGTTGAACTCTTTA--------------
>chr5A_704
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------TATATTTTC
GAAACTTCTATGGAAAATAAAAACTACGG---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AAAAAATATACTATCACATTTTCTGATTTCCATGTGGTC
GTTGTG--------TCACGGTTCACAGATG---------------------GCAGGAGCGCTCGTCCAGGTGGTCGGCTC
GCCGCCTCCCCTTCTGCCCCCGCCGCGCCGCGTGTCCCGCCGCTTCTCCTC---CTCCTCCTCCTCTGGCTCTCCCCGCC
TCTCCGCTGCCGTGATATAGCCACGGGCTTCCTCCGAGAAGAGCGCGTCGCAGGCGAGGCGAGGCGAGGGGTCG-----G
GGAAGGGAAGGGAAGAGGATGTCGCTGGGGGCGGTGTTCCACGGCGCGCAGCTGATGCTGGATCTGGCGGTGGCCGGGAT
GTCGCTGATGTTCGCGCTCGGCCTCTTCGCCGTCGTCACCACCGTGCTCTGCTCCGCCGCCTTCCTCCACCACTCCAAGC
CCGTCGCGTCGTAGCCGCGAGCTGCCTCCCACCAGGCCCACGACCCCCTCGGCGCATCCTAATCGTAAGCCCGATGC---
-CAAGAATTTCATCCGTTCATTTCAATTCAT-TCCAAGGTTGTGCCCTCGGCGATGAGAAATACTGGAATGTAGCGCGGT
GGAATCGATTTGTCTAGCACTTTAGTG-GTGAATTTTGGATGGAATCAAAGAAACAATGTGCTCGCTCCACATGTTCATG
CTTCCTGACTGGCTATGTGGATAAGC--------ATGGACGACGCCACGATGGTTTGAGCAGGAGCACGTTGTCGTACTT
GGAATCCAGGAAATTGACATTCAGCACGATTCCCCTAGCATTGTGTCCTGTGTTACATTACTTCAGAGTCCGCACCATTT
CCCATGACCCCTGTCGCCCTAACATTTTAAGCAATTTTTACTGCCAAATGTGCCATGTGGAGTACATTTGCTAAGGCTGC
ATTTTGTGTTTAGTCTCACAAATTAATGTGGCAGGTTAGCTCCCCTCGTTGTCCTGGCCTTGTTGTGATTGATAGCTTGG
TAGAGAACTCCAAGGAGTCCAAGCTGGAACACCCTGTACG---ATTCCCTGAAGATTGTGCCTGCTGTTTCTGTTGTTTC
TGAGAATATCTGGTGTGAGATTAGGCATGATAGTCATCTGGGTGATTAGGCATATTTCTTTTTGCGACCTTGAGCTGGCT
ACTGATGCTTTTGAATGAAGTGGCTTTTATGTGTTTGGTCAGAAAAAATAGCATCCGAAA--------------------
----------------GCTGAGTGAAACGACTTAAAGTTGGGAATTTCACAAATCACCATCCCTGCCTACTTTGGATAAC
TGTAACTTTCACAACAAAACATCAACTC-ACAGCCAAAACCATG------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S-
SS-------------S------------------S--------------------------------------SS-----
----S-----------SSSSSSSSSSSS-------SS--------------------------------SS-SSS-----
----S-----SS------------S---------------S-S----------------S--S----SS-----------
--S-------------SS----SS------------S----S-SS--S---------S-------------SSS----S-
-S--SS----S-----S--------SSS----SSSSSSS--------------SSSSSSSS-------------------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S---------------S-----------------
------SSSSSSSS------------------------------------------------------------------
------------------------------------------------S-------------------------------
------------------------------S--------------------S----------------------------
------------------------------------------------------------------------------S-
-------------------------------------------------------S------------------------
--S----------------S--S---------S---S------S---------S-----------------S---SSSSS
--S-----------S---------------SS--------------S---------------------S----SS-----
-----S--------------------SS-------------------S--------------------S-----------
-----------------------S-SSSSSSSSS--------S----------------S----------S---S-----
----------S----------S----S-----------------S-S--S-SS-S-------------------------
----------S----S--SS--------S----S--S-S---SSS--------------S----S-------S---S---
-------------------------------------------------------------------------SS----S
SSSS--S-----------------------------S--SSSS-------------------------------------
----------------------------------S---------------S--S--------S-S-S-------------
-------S--------------S----------------------------------------S--S-------------
S---------------S----------S-----------S--S-------------------SS----------------
-------------------------------S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
---S--------S-----------S--------------------------S-S------S-------------------
--------------S-S----------SSSSSSSSSSSSSS
>forward_293
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------GGGGGACGAGTGGTAGTACT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------
>reverse_2514
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TATGGACGATGCCACGATGG---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------
