>input_sequence_87372
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---------------------------------------------------------------------ATGTCGCTGGG
GGCGGTGTTCCACGGCGCGCAGCTGATGCTGGATCTGGCGGTGGCCGGGATGTCGCTGATGTTCGCGCTCGGCCTCTTCG
CCGTCGTCACCACCGTGCTCTGCTCCGCCGCCTTCCTCCACCACTCCAAGCCCGTCGCGTCGTAG---------------
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>chr5A_1_TraesCS5A01G250800
TTAGCCTCATTAGCCACACCATATGACCACAGACCCCTCCCAAAGTTTCCGTGCGAATTGTCAAGTTGTACATGAAGTAC
CATTTAGGCTCATCTTATTGCTGCCCAAATTTACATGCATGCACATCACCATCTTATATCACCCTACACCAAAAATCAGC
CCAAATGGCCAAGCCATCCGACTACAGCAAGATCACAAAGCTTTTGTACATAATTTAATTTGTACGGCAAATGTCATCTA
TACCCATCCACTTTGCCTCAAACTTTGCATACTTAATTATCATCATCCTCTGTAACACTAAGCTCCCTAGTTTTGAAAAA
CCCACATTCAATTGAGGTCTCCAACTAAAATTGGGTCACCTAATTTTGACCGGGTTAATAATTTCTCAAAGCTCTCACAT
TCAATTCTTCTATACCATACAATATGCTTCCTAATTTTTAA-GGCCTCACTATTAATTGAGGTATTTAATTTAGAATCGG
GTCAACCGATTTTGACCGGGTCAACACTTTTTCAAGCTCTTTTATTTAATTATTTTAATTCACTATGTTCCCTAA-TTTA
GAAACTCTTTCATTCAATTGAGGTATTCAATTTTGAATTTGGTTTACTATTTTGA-------------------------
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--------------------------------------------------------------------TTGAGCCAACGA
TTTTTCAAATCAATCAGCAGCAACCGGTTTTCCCTTCGGAAAAAATACACTATCACATTTCCTGATTTCGAAACTTC---
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------------------------------------------TATATTTTCGAAACTTCTATGGAAAATAAAAACTACGG
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------------AAAAAATATACTATCACATTTTCTGATTTCCATGTGGTCGTTGTG--------TCACGGTTCACAGAT
G---------------------GCAGGAGCGCTCGTCCAGGTGGTCGGCTCGCCGCCTCCCCTTCTGCCCCCGCCGCGCC
GCGTGTCCCGCCGCTTCTCCTC---CTCCTCCTCCTCTGGCTCTCCCCGCCTCTCCGCTGCCGTGATATAGCCACGGGCT
TCCTCCGAGAAGAGCGCGTCGCAGGCGAGGCGAGGCGAGGGGTCG-----GGGAAGGGAAGGGAAGAGGATGTCGCTGGG
GGCGGTGTTCCACGGCGCGCAGCTGATGCTGGATCTGGCGGTGGCCGGGATGTCGCTGATGTTCGCGCTCGGCCTCTTCG
CCGTCGTCACCACCGTGCTCTGCTCCGCCGCCTTCCTCCACCACTCCAAGCCCGTCGCGTCGTAGCCGCGAGCTGCCTCC
CACCAGGCCCACGACCCCCTCGGCGCATCCTAATCGTAAGCCCGATGC----CAAGAATTTCATCCGTTCATTTCAATTC
AT-TCCAAGGTTGTGCCCTCGGCGATGAGAAATACTGGAATGTAGCGCGGTGGAATCGATTTGTCTAGCACTTTAGTGGT
GAATTTTGGATGGAATCAAAGAAACAATGTGCTCGCTCCACATGTTCATGCTTCCTGACTGGCTATGTGGATAAGC----
----ATGGACGACGCCACGATGGTTTGAGCAGGAGCACGTTGTCGTACTTGGAATCCAGGAAATTGACATTCAGCACGAT
TCCCCTAGCATTGTGTCCTGTGTTACATTACTTCAGAGTCCGCACCATTTCCCATGACCCCTGTCGCCCTAACATTTTAA
GCAATTTTTACTGCCAAATGTGCCATGTGGAGTACATTTGCTAAGGCTGCATTTTGTGTTTAGTCTCACAAATTAATGTG
GCAGGTTAGCTCCCCTCGTTGTCCTGGCCTTGTTGTGATTGATAGCTTGGTAGAGAACTCCAAGGAGTCCAAGCTGGAAC
ACCCTGTACG---ATTCCCTGAAGATTGTGCCTGCTGTTTCTGTTGTTTCTGAGAATATCTGGTGTGAGATTAGGCATGA
TAGTCATCTGGGTGATTAGGCATATTTCTTTTTGCGACCTTGAGCTGGCTACTGATGCTTTTGAATGAAGTGGCTTTTAT
GTGTTTGGTCAGAAAAAATAGCATCCGAAA------------------------------------GCTGAGTGAAACGA
CTTAAAGTTGGGAATTTCACAAATCACCATCCCTGCCTACTTTGGATAACTGTAACTTTCACAACAAAACATCAACTC-A
CAGCCAAAACCATGTGAATTGATTGTGCCCGGTGCTCACCCTCATCTGAATTCTGAAACAACTCAATTATCTCTTTTGCA
GTTTTGCTTTGCCCTGTCTTTGCTAGTTCAGTTGAACTCTTTATCTTTTACTAACTGATTACCATTCCCCTTAATAAG
>chr5D_1
TTAGCCTCATTAGCCACACCATATGACCACAGACCCATCCCAAAGTTTATGTACGAATTGTCAAGTTGTATATGAAGTAC
CATTTAGGTTCATCTTATTGCCACCAGAATTTACATGCATGTG----ACCATGTCATATCTCCCTACACCAAAAATCAGC
CCAAATGGCCAAGCCAGCTGACCACAACAAGATCACAAAGCTTTTGTACATAATTTAATGTGTACGACAAATGTCACCTA
GACTCATCCACTTTGCCTCAAACTTTGCATACCTAATCATCATCATCCTCTATAACACTAAGTTCCCTAGTTTTGAAGAG
CCCACATTTAATTGAGGTCTCCAACTAAAATTGGGTCACCTAATTTTGACCGGGTTAAAAATTTCTCAAAGCTCTCACAT
TCAATTCTTTTATACCATACAATATGCTTCCTGATTTTTAA-GCG-TCACAATTAATTGAGGTATTCAATTTAGAACTGG
GTCAACTGATTTTGACCGAGTCAACACTTTTTCAAGCTCTCCCATTCAATTATTTTAATTCATCATGTTCCCTAATTTTA
GAAACTCTTTCATTCAATTGAGGTATTCAATTTTGGATTTGGTTTACTATTTTGA-------------------------
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--------------------------------------------------------------------TCGGGCCAACGA
TTTTTCAAATCAATCAGCAGCAACTGGCCTATAAAAACA----GATCCCGCGCACCCTCCCACCACCTGGAAAAAG----
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---------------------------------TAAGTCTTTGACTTGTTACAACACGAGTGCTTGCATTTTACCGGATT
TATTTTAGTCTTTTTGATACTACTCCCTTCGTTTCTAAATATAAGACCTTTTAGAGATTTAAATACGG-----------A
TGTATATAGGCATATTTTAAAGTATAGATTCACTCATTTTGCTCCGTATGTAGTCTATATTGGAATCTCTAAAAGGTCTT
ATATTTAGGAACAACAGGAGTATTTCTCTGATGATATGGTATGCTTCTCAACTTCAGGTGTCTCTCGCGATTTCGTTAAT
CTCAAGTGTACTGGCAAACCTTTCGAAATTGCTCATAGTGATA--TGTACGTGAATGTCTGATCAATGCTGTGTTTAAAA
AAACA-----TTTTAAGAGAAAAACCGTGTCCATATTGCTCTTATATTTTCGAAACTTCTATGCAAAATAAAAATTACTA
CCTCCGTCTCGGTGTATAAATCATTCGTGTAGTTTTAGGTCGACAATTTAACTATCTAAATATTTATTATATGTGATAAA
AATATATATTTAGAAACTAAATCCGTGTAGAAATCTGGTGATATACTTTTCATGACGTATAATACATATTTAATTTCTCA
AATCGATGACCTAGGACTACGCAAATGACTTAGGATGGTCATAGTGGGGAGTAACTTATACTAGTGTCATGCATATGACA
CTAGTCTAAGTTACTACCTCCATAGTGCAAAATAATATAGTAATAGTATCATAGATGGCTTCATTATTACCTTCCAGACT
CATTCTTTCTCGGGCAGCGCTATGTTACAGCAACATGTTATGTTACTCTAAATACCTCTCTCCTCATTAACTACATGCCA
CATAAGCAAAATTTTCTTGGAATGCGCTATGTTACTACCTAAGGCTGGTCATAGTGGAGAGTAACTTATACTAATGTCAT
GCCTCCATAGTGCAAATTAACATAGTAGTAGTGTCATAGGTTGCTTCATTTATTAGCTCATAGACTCATTTTGCCTCGGG
AAGCGCTATGTTACAGTAATATACTCCCTCATTTCCGGTTTATAGGGCTTAATTCAAAAATCTCACGAACCAAGGTAGAT
GGTGAGTGGTGGAATATTTTTTGTAGCTTGCAACCAATTAATGCTCTTGTTTTCCTAAAAAAGTATGTTTACCAATGCAT
TAATTGCAATGCATGCATGCATAAAGTACATGCATTGGTCAATTTTCTTTTAATACTTGCATTCAATGATTTAATGCACC
TTGAAATCTGAACTTGTAATGAAGAACAATCAAATAGAGCCTTATAAAATGAAAAAACTAAAATTTTAAGATAAGCACTG
TAAACCGAAAAGGAGGGAGTATTATGTTACCACAAGCATCTCTTTCCTTATTAAATACTTGCCACATAAGCAAAATTGTC
TTGGGATGTGTTAAATTACTACCTAAGTTACCCTACTATGGCTAGCCTAAGTTACTCCCACTATGACTAGCCTTATTGAC
GGAGATAGTACGAAAAAAA----TATCACATTTTCTGATTTCCATGTGATCGTTGTG--------TCCCCCTAAAAAAAA
GTGATCGTCGTGTCACGGTTCAGCACGAGCGCTCGTCCAGGTGGTCGACTCGCCGCCTCCCCTTCTGCCCCCGCCGCGCC
GCGTGTCCCGCCGCTTCTCCTCCCCCTCCTCGTCCTCTGGCTCTGTCCGCCTCCCCGTTGCCGTGATATAGCCACGGGCT
TCCTCCGACAAGAGCGCGTCGCAGGCGAGGCGAGG-----GGTCGGGGAAGGGAAGGGAAGGGAAGAGGATGTCGCTGGG
GGCGGTGTTCCACGGCGCGCAGCTGATGCTGGATCTGGCGGTGGCCGGGATGTCGCTGATGTTCGCGCTCGGCCTGTTCG
CCGTCGTCACCACCGTGCTCTGCTCCGCCGCCTTCCTCCACCACTCCAAGCCCGTCGCGTCGTAGCCGCGACCTGCCTCC
CACCAAGCCCACGACCCCCTCGGCGCATCCTAATCGTAAGCCCGATG----TCAAGAATTTCATCCGTTCATTTCAATTC
AT-TCCAAGGTTGTGCCCTCGACGATGAGAAATACTGGAACGTAGCGCGGTGGAATCGATTTGTTTAGCACTGTAGTGGT
GAATTTTGGATGGAATCAAAGAAACAATGTGCTCGCTCCACATGTTCATGCTTCCTGACTGGCTATGTGGATAAGC----
----ATGGACGACGCCACGATGGTTTGAGCAGGAGCACGTTGTCGTACTTGGAATCCATGAAATTGACATTCAGCACGAT
TCCCCTAGCCTTGTGTCTTGTGTTACATTACTTCAGAGTCCGCACCATTTCCCCTGACCCCTGTCGCCCTAACATTTTAA
GCAATTTTTACTGCCAAATGTGCCATGTGGAGTACATTTGCTAAGGCTGCATTTTCTGTTTAGTCTCACAAATTAATGTG
GCAGGTTAGCTCCCCTCGTTGTCCTAGCCTTGTTGTGATTGATAGCTTGGTAGAGGACTCCAAGGAGTCCAAGCTGGAAC
ACCCTGTACG---ATTCCCTGAAGATTGTGCCTGCTGTTTC-GTTGTTTCTGAGAATATCTGGTGTGAGATTAGGCATGA
TAGTCATCTGGGTGATTGGGCATATTTCTTTTTGCGACCTTGAGCTGGCTACTGATGCTTTTGAATGAAGTGGCTTTTAT
GTGTTTGGTCAGAAAAAATAGCATCAGAAAGCTGCAACTAAGGGTCTTAGATCTTGTTTGGCCACCGCTGAGTGAAACGA
CTTTAAGTTGGGAATTTCACAAATCACCATCCCTGCCTACTTTGGGTAACTGTAACTTTCACAATGAAACATCAACTCGA
CAGCCAAAACCATGTGAATAGATTGTGCCCAGTGCTCACCCTCATCTGAATTCTGAAATAACTCAATTATCTCTTTTGCA
GTTTTGCTTTACCCTGTCTTTGCTAGTTCAGTTGAACTCTTTATCTTTTACTAACTGATTACCATTCCCCTTAATAAG
>chr5B_1
TTAGCCTCATTAGCCACACCATATGACCACAGACCCCTCCCAAAGTTTATGTACGAATTGTCAAGTTGTATATGAAGTAC
CATTTAGGCTCATCTTATTGCCACCAAAATTTACATGCATGTGCATTACCATGTCATATCGCCCTACGCCAAAAATCAGC
CCAAATGGCCAAGCCATCTGACCACAGCAATATCACAAAGCTTTTGCACATAATTTAATTTGTATGGCAAATGTCACCTA
GACCCATCCACTTTGCCTCAAACTTTGCATACCTAATCATCATCATCCTCTATAACACTAAGCTCCCTAGTTTTAAAGAG
CCCACATTTACTTGATGTCTCCAACTAAAAGTGGGTCACCTAATTTTGACCGGGTTAACAATTTCTCAAAGCTCTCACAT
TCAATTCTTTTATACCATACAATATGCTTTCTGATTTTTAAGGCG-TCACAATTAATTGAGGTATTCAATTTAGAATTGC
GTCGACCGATTTTGACCGGGTCAACACTTTTTCGAGCTCTCCCATTTAATTATTTTAATTCACTATGTTCCCTAATTTG-
GAAACTCTTTCATTGAATTGAGATATTCAATTTTGGATTTGGTTTACTATTTTGACCGAGGGGAAAACTGAGCAAAGAGA
TATATAAATATATTAGAAAAGATTCATTTTCTAATATATTTATATATCTCTTTGCTCCACGACGTGGAGGTCACTTCTAC
TTCATTTTCTTGTTTAGATTCATTACTTCAGTGATTGAACATGGGCAGATACCTATAAGGACCTCATTTCGGGCCAACGA
TCTTTCAAATCAATCAGCAGCAACCGGCTTATAAAAACATATCGATCCCGCGCACCCTCCCACCACTTGGAAAGAAGGAA
GTCTTTGACTTGTTTTTCTTAAACGAGGCAAAAGACTTGCCATTTTTATTGATTAAGAAGAAGAGAATTGCCCGATTAAT
TGACAGAAAACTGGGCTAAAACCGATCATCACAACCCACATGACATGGGCACCACCGGTCAACCTGGGCACCGGCATGGA
ACAAGACACAACGGCACATGCCAATGGATGGCCACACGTGCAAGCAACCGACATCTCCGACTTTGATGACGAGCAACACA
AGGAAAATATGCAGGACTTGTGCCGACCATGCCCACTGCAAACGGCCACCGAATGTCTGACATCGTCACCACTGGACACG
CTCCAACGCAGCTTCGACTTCAAAGCAACCCAGCAACCACTACCGGGAAGAACCAACTACCGAAGACCAAGCCGCGACCC
AACCTCCTCTCAACGCCATCGTCGTTGCCAAATAGAAACCAGCACCCCGCCTCAGCCTCAGCAAACCACGCGGCGAAGAT
GCCGCCATCGACGGCGAAGATGCCATCATCGTCCAGACTCTCAGTCTTAGCCGGCTCCGAGACGGTGCCCCCAAGGAGAA
GAAAGATGCGAAGACGCCTCCATCGCCCGATCTAGCGGATCTGAGGTTTCCCTCCGGAGCCCAAGCCGTGGGGAGAAGGT
GGAGCACCTCCACGACGACGCTTCCAAGAAAGACCGCGACACCCGCTGGCGCCGCCGGCGCCGGCTCCGGTGAAGACCGG
AGCAAGGATTTCTCCCGGATATGTGCCGACCACCTGCCACCACCGACCGCCGCCCACGAACCACCACCCCTGCCAAGGCC
GACTCCAATCTAGCCACGGGACCCCTTGATCCACCGCGTCCAGAAGCGCTTCGCCCCCTGGCCAAAGCCGCCACCACCAA
ACCCGGGGCCGCCGCCCCGGCAACCACAGCCCACCGCCGCCGACGACATCACCACCAAAGGAGCATGACCAGGCCCATCG
GTCCAGAGCCCACATCACCAGATCCAGAGGCAAGGGAGGGCCTGACCGAATCGGAGACCTCGCTCCGGGCCTCGCTGCGA
GATGGTCAGCAAACAGAGAAACCGGCGGGAAGCCGCAGCCTCGCGCGACGCACAGTCCTCCGCCGTTAGATGTGGTCGGA
GCCACATCGAAGGATGGGGAGGGGGCGCGGTCGCTGGGCCCCAACCACACCGCAAGGCACGGCCACGCCGACGCCGCGCA
GCAGCCGCGCGCCGCACCGCCAGCTCAAGCCACCGCCAGGGGAAGCCGCCGTCGCACGGGCTCTAAATCCGCCACCGCCT
CCTGTCGTCGTCGGAGGAGAGGAAGAGGAAGGGGAAGACCCAGTCGTCGTCGTCCGCCTCCCGGGCTTAGCCCGGCGGAC
TCTTTCGGCGACGGCGAGGGGAGGGAGGGGGGCGGCCCGGCAGCGCGGACGAGGGCTCTGCCCGAGTCGCTAGAGAGGCG
ACGCGGGGGACGAGTGGTAGTACTCCTCATTTTTAAGTCTTTGACTTGTGAGGACACGAGTGCTTGAATTTTACCGGATT
TATTTCAGTCTTTTTGATACTACTCCCTTCGTTTCTAAATATAATCCCTTTTAGATATTTAAATACGAACTACATACGTA
TGTATACGGGCATATTTTAAAGTATAGATTCACTCATTTTATTTTATATGTAGTCCATATTAAAATCTCTAAAAGATCTT
ATATTTAGGAAGAG-AGGAGTATTTCTCTGGTGGTATGACATGCTTCTCAACTCCAGGTGTCTCTCGTAATTTTATTAAT
CTCAAGTTTACTAGTCAATCTTTCGAAAGTGCTCATAGTGATGTGTGTATGTCAACTTCTGGTCAATACTGTGTTTCCCA
AAAGGAACATTTTTAAGAGAAAAAAATGTGTG-------TCTTATATTTTCGAAACTTCTACGGAAAATAAAAACTACGA
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------------AAAAATA----TATCACATTTCCTGATTTCCATGTGATCGTTGTGCCACTGACTCACGGTTCACAGAT
G---------------------GCACGAGCGCTCGTCCAGGTGGTCGGCTCGCCGCCTCCCCTTCTGCCCCCGCCGCGCC
GCGTGTCCCGCCGCTTCTCTT---CCTCCTCCTCCTCTGGCTCTGTCCGCCTCTCCGTTGCCGTGATATAGCCACGGGCT
TTCTCCGAGAAGAGCGCGTCGCGGGCGAGGCGAGG-----GGTCG-----GGGAAGGGAAGGGAAGAGGATGTCGCTGGG
GGCGGTGTTCCACGGCGCGCAGCTGATGCTGGATCTGGCGGTGGCCGGGCTGTCGCTGATGTTCGCGCTCGGCCTCTTCG
CCGTCGTCACCACCGTGCTCTGCTCCACCGCCTTCCTCCACCACTCCAAGCCCATCGCGTCGTAGCCGCGGGCCGCCTCC
CACAAAGTCCACGAACCCCTCGGCACATCCTAATCGTAAGCCTGATTTCTATCCAGAATTTCATCGGTTCATTTCAATTC
AAATCCAAGGTTGTGCCG-----------------TGGAGTGTAATGCGGTGGAATTGATTTGTTTGCACTGTAGTTTGT
GAATTTTGGATGGAATCGAAGAAACAATGTGCTCGCTCGACATGTTCATGCTTCCTGACTGGCTATGTGGATAGGTATGG
CCGTATGGACGATGCCACGATGGTTTGAGTAGGAGCACGTCGTCCTACTTGGAATCCATGGAATTGACATTTAGCAGGAT
TCCCCTAGCATTGTTTTTTTTTCTT--------------------------CCCTGACCCTTGTCACCACATTTTAGCAT
TTATAACTAAA----AAATGTGCCATGTGAAGTATATTTGCTGAGGATGCATTTTGTGTTTAGTCTCACAAATTAATGTG
GCAGGTTAGCTCCCCTCGTTGTCCTAGCCTTGTTGTGATTGATTACTTGTAGAGGGC----------TCCAAGCTGGAAC
ACCCTGGACTGATATTCCCTGAAGATTGTGCCTGCTGTTTC-GTTGTTTCTGAGAATATCTGGTGTGAGATTAGGCATGA
TAGTAATCTGGGTGATTAGGAATCTTTCTTTTGGGGGCCTTGAGCTGGCTACTGATGGTTTTGAATGAAGTGACTTTTAT
GTGTTTGGTCAGAAAAAATAGCATCAGAAAGCTACAGCTAA-GGTCTTAGGTCTTGTTTGGCCACCCCTGAGTGAAATGA
CTTAAAGTTAGGGATTTCACAAATCACCATCCTCGCCTACTTTGGATAACTGTAACTTTCACAATGAAACATCAACTCGA
CGGCCAAAACCATG------------------------------------------------------------------
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>SNPs
------------------------------------------------SS--S-----------------S---------
---------------------SS--S---------------SS---S-----S-S-----S-------------------
------------------S---S-----------------------------------------------------S---
S-------------------------------S----S-------------S-------------------------S-S
--------S-------------------------------------------------S---------------------
---------S----------------------S----------SSS----S---------------S----------S--
----------------------------------------SSS-------------------------------------
-----------------------------------S--------------------------------------------
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---------------------------------------------------------------------S-S--------
---------------------------S--SSSSSSSSSS-SSS--S-SSSSSSS-S-SS-SSS-S--S----SSSS---
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------------------SSSSS-------------------------S-------------------------------
-------------------------S------------------------------------------------------
--------------------------------------------SS-----------S----------------------
-----------------------------------SSSSS----------------------------------------
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-----S-----------------------------------------S--------------------------------
---------------------S------------------------------------------S---------------
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----------------------------------------------------------S---------------------
-----------------S-----------------------------------S--------------------------
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-------------------------S-----------------------------S------------------------
-----------------------------------------S--------------------------------------
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-------------------------S------------------------------------------------------
----------------------------------------------------------------SS--------------
-------------------S----------S---------------------------S---------------------
----------S-------------------------------------------------------------------
>forward_837
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-----------------CAGCAACCGGTTTTCCCTTC-------------------------------------------
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>reverse_4856
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-------------------------------------------------------AACTCCAAGGAGTCCAAGCTG----
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