>input_sequence_87364
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----------------------------------------ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATA
CTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGAGTTGCAACCCACGCCACCCCCTCCCTCTTATAGCCTCGCCG
AGCCTCTCGCCCTCCCTCGCCAGGCGATGTGGGACTAA------------------------------------------
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>chr5B_1_TraesCS5B01G440300
GGTCTTCGCCTGCAAAGTTTTTGGCCATGACGCAGTTGTCGGCTCAGTGATGACCTCTGTTCTGCCGAGCCCGTGATCTT
GGTCTTGTTACATCAGAATGGTAACCTTTGGGGGATTCCTTGAAAACTCACGCTTGTCCTTACCTCCTTAGCATCAAAGA
GGAAACTATCCTGGTCTGCGCCCGCTGGCGCCCACCTGACCTTGGTGGTCAATGCTCAGGTCATCGCGAGCCTGACGAGG
TGGGGTACCTGCATAGAGATCTCCGCTCCTCGGAGGCAGGAGGGCTGCTCCCCGAGAGGTCTTGATATCGTTCGCCTCGC
GAGGGCCTTGCTTGTAGAGTCGTCGATGAAGTCATGTGCTGGGCCGCGGGCAGGCAGGTCTAGGTACCCTCGATCCTAGA
ACACCGACAGAAGTAGATGGCATCGCATCTAGTTGTTGACTATGAACATCTTTTGTTGTTGCTGAGAATCACTATGAACA
AAATTACGAACAGAGACAACTTGAACAAAGTACGAATGAGCCGCTTGACTGTGACTCGTGTAAGGAACTAACTGAATCAG
TACGCAATTTGTTCTCGAGTAATTTTGGAACGGCTTAACTGTTTTTGCCGTGAAGAACTGGTGTTTGAAAAAAAAACATT
TGGATCAGTGTACTGGGACACAGGAGAAACAAAGAAATTCAAGTACATTCACTCCTCATCCTGTTGCTGCTCCTATTTTT
CAAGCACATGGTGCGGTGCAGAAAGAGATGCTGCCGTGGAGGGAGTCTGAACCTGAACATTGGACTAAAGGAGAGCCAGG
TTTTCTTCGGTTCCGATTTTAGACAGCTCCAGAACGAACAGTCCACTAATTTAAACAAACAAACCTTGTATTTGAATTGG
TTGGGGTGCGCCAGGCCCGGGTAGCAGTGCAACGCCCGGGCGACACACGAGGGCCCCAGTAGCAAGCCACTGTTGTGGAC
CCTCCTCCACAAAAAATAAATTTAATATCGTTGTAAGCACATGGCCCACATATCAGATATTAAACTGATAAGAACAGATA
CTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGAGTTGCAACCCACGCCACCCCCTCCCTCTTATAGCCTCGCCG
AGCCTCTCGCCCTCCCTCGCCAGGCGATGTGGGACTAAACGAAACCACCAGCCTCCGCTCCCCGCACGCACCAGGGCAGC
CAGCAGGTTCGACGGTATGTGCTAGCCGCGTGGGCTCTGATTTCCGCCGGCCTGATGGGCTTCGACTCGAACGGGCCCGA
CTGCGCGACGGACGGGGAGCCCAGGCCCAGGCCGGGAGGGAAAGTGGGAGAGGAAAAGAAAAGGCATCGGGTGCTACCCG
A-CCGCAGCTCGCACGCA---ACGCAACCCAAGTCGTCATCGCACGAGACGAGACGAGTCGAGGTCCAAGTCGCCCGAGC
GCAAGCCCGCCGTCTCTCTCGCGTCCGCCCCTGCTAGCCCGGCCTTCCAGAAGCTTCCGGGAGCCATCCATGGCCACCGC
GCCCGCGCCGACCGCAGCCGCCACCGCGCCCGCCGCCGCCGCCGCGCCCGCCCCGTCCGCGTCGGTGCCGCGCGGTCAGG
TGGATCTGGTCGACTTCATCGACTGGACCGGCGTCGAGTGCCTCAACCAGGACCCCGCGCACGGCATCGCCAACGCCCTC
AAGCAGGTACCGCGTCAA-CTCCCGCGGCCAGACGCT-TCCCCGGCGCCGATCCGGCGGCGGCCCGTTCGATTTTCGCCG
GGGGAACTCC-CCCCTAGGGTTTCGTA---GATTAGCGCCGTGCCACGGCCGTGTA----TGTGTGCTGTGTTAACCCTC
CTGCGGATTCTAGTCTAGAGCCGATTGCGTTTCTCATGAGTGGTGCTTTTCAACAGGGCTACAGGGAGGATGAGGGGCTG
CACCTCGCCAGCGACTCGGACGAGCAGCTGCTGATCTACATCCCCTTCATGCAGGTCATCAAGCTGCATTCCGCGCTCTT
CAAAGGCCCCGAGGAAGAAGGTGAGATTTGTAACTCAACGTCACTGCACAAATGCTAG-TTGCTGCATACATTGATTACT
TAGAGTTAAAGCCTCTTCTTCTGAGGTCAAGGAGGA----CTTGTTTCTGTTCGAACCAGGGGGCTCGATTTAGTCTGTT
GTGAATGCTAATAGACG
>chr5D_811
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----------TTCAGGTTTTAGACAGGTCCAGAGAAGAAGCGTCCGCTCGTT---CAAACAAATTTTGGATTTGATTTGG
TTGGGGCGCGCCGGGCCCGGGCAGCGGTGCAACGCCCGAGCGACACGCGAGGACCCCAGTGGCAAGCCACTGTGGTGGGC
CCTCCCCCACAAAAAATAAATTTAATATCGTTGTGGGCACATGGCCCACATATCAGATATTAAACTGATAAGAACAGATA
CTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGAGTTGCAAGCCGCGCCACCCCCTCCCTCTTATAGCCTCGCCG
ACCCCCTCGCCCTCCCTCGCCGCGCGATGTGGGACTAAACGAGACCACCAGCCTCCGCTCCTCTCACGCACCAGCG----
CAGCAGGTCCGACGATATGTGCTAGCCGCGTGGGCTTTCGTTTCCGCCAGCCCGATGGGCTTCGACGCGAACGGGCCCGA
CTGCACGACGGATGGGGAGCCCAGGCCCAGGCCGAGAGGGAAAGTGGGAGAGGAAAAGAAAAGGCATCGG----------
--------CTCGCACGCAAGTACGCAACGCAAGTCGTCATCGCACGGGACGAGACGAGTCGAGGTCCAAGTCGCTCGAGC
GCAAGCCCGCCGTCGCTCTCGCGTCCGCCCCTGCT---CCGACCTTCCAGAAGCTTCCGGGAGCCGTCCATGGCCACCGC
GCCCGCGCCGACCGCAGCCGCCCCCGCGCCCGCCGCCGCGGCCGCGGCCGTCCCGTCCGCGTCGGTGCCGCGCGGGCAGG
TGGATCTGGTCGACTTCATCGACTGGACCGGCGTCGAGTGCCTCAACCAGGACCCCGCCCACGGCATCGCCAACGCCCTC
AAGCAGGTACGGCAAGCCGCTCCCGCGGCCACACGCGATCCCCTGTCACCGATCCAGCATCT--CGTTCGATTTTCGCCG
GGGGCACTTCTCCCCTAGGGTTTCGTACTAGATTAGCGTCGTGTCACGGCCGTGTGTGTGTGTGTGCTGTGTTAACCCTT
CTGCGGATTTTAGTTTAGATGCGATTGCGTTGCTGATGATTGGTGGTCTTCAACAGGGTTACAGGGAGGATGAGGGGCTG
CACCTCGCCAGCGACTCGGACGAGCAGCTGCTCATCTACATCCCCTTCATGCAGGTCATCAAGCTGCATTCCGCGCTCTT
CAAAGGCCCCGAGGAAGAAGGTGAGATTTGTAACTCCACGTCACTGCATGAATGCTAGGTTGCTGCA-ACATTGATTACT
T-AGAGATAAGCCTCTT-TTATGAGCTCAGGGAGGAGGAACTTGTCTATGTTCAAACCAGGGTGCTCGATTTAGTCTGTT
GCGAATGCTAATAGA--
>chr5A_840
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---------------------------------------AGTCCACTCATTTCAAACA--AACTTTTGGATTCGATTTGG
TTGGGGTGGGCCGGGCCCAGGCAGCAGTGCAACGCCTGGGCGACACGCAAGGGACCCAGTGACAAGCCACTGTGGTGGGC
CCTTCCCCACAAAAAATAAATTTAATATCATTATAAGCACATGACCCACGTATCAGATATTAAACTGATAAGAACAGATA
CTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGAGTTACCAGCCGCGCCAGCCCCTCCTTGTTATAGCCTCGCCG
AGCCCCTCGCCCTACCTCGCCGCGCGATGTGGGACTAAACGAAACCACCAGCCTCCGCTCCCCTCACGCACCAGCAGT--
-----------------TGTGCTAGCCGCGTGGGCTCTGATTTCCGCCGGCCCGATGGGCTTCAGCTCGAACGGGCCCGA
CTGCGCGACC-------------------------------------GAGAGGAAAAGAAAAGGCATCGGGTGCTACCCC
GGCCGCAGCTCGCTCGC----ACGCAACGCAAGTCGTCATCGCACGAGACGAGACGAGTCGAGGTCCAAGTCGCTCGAGC
GCGAGCCCGCCGTCTCTCTCGCGTCCGCCCCTGCT---CCGACCTTCCAGAAGCTTCCGGGAGCCATCCATGGCCACCGC
GCCCGCGCCGACCGCAGCCGCCCCCGCGCCCGCCGCCGCCGCCGCGGCCGCCCCGTCCGCGTCGGTGCCGCGCGGGCAGG
TGGATCTGGTCGACTTCATCGACTGGACCGGCGTCGATTGCCTCAACCAGGACCCCGCCCATGCCATCGCCAACGCCCTC
AAGCAGGTACCGCGTCTA-CTCCCGCGGCCAGACGCGATCCCCGGCGCCGATCTGGCGGCGGCCCGTTCGATTTTCGCCG
GGGGCACTCC-CCCCTAGGGTTTCGTA---GATTAGCGTCGTGTCACGGGCGTGTGTGTG------CTGTGTTAACCCTT
CTTCGGATTTTAGTTTAGATGGGATTATGTTTCTGACGATTGTTGGTTTTTATCAGGGTTACAGGGAGGATGAGGGGCTG
CACCTCGCCAGCGACTCCGACGAGCAGCTGCTGATCTACATCCCCTTCATGCAGGTCATCAAGCTGCATTCCGCGCTCTT
CAAAGGCCCTGAGGAAGAAGGTGAGATTTGTCACTCAAAATGCTAG-----------G-TTGCTGCATACATTGACTACT
TAAGAGTTAAGCCTCTT-TTCTGAGCTCAGGGAGGA---ACTTGTCTATGTTCGAACTAGGGGGCTCGATTTAGTCTGTT
GTGAATGCTAATAGACG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS---S-S----------S------SSSS-S--------S----S----------SS---S------S----
------------S--------S------------------------S-------------S------------S----S-
-----S--------------------------------------------------------------------------
----------------------------------------------S--S------------------------------
----S----------------SS----------------------------------------S----------S-SSSS
--------S-----S-------------------------------------S---------------------------
------------S---------------------S--------------------------------------------S
S---------------------------S---------------------------------------------S-----
-----------------------------------SSS---S--------------------------------------
----------------------S-----------------------S----------------------------S----
----------------------------------------------------------S---------------------
----------------S-------------------S-------------------------------------------
----S---------------------------------S----S-----------S-----------------------S
---------S----S----SS-------------S----S-----S------------S---------------------
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------------------------------------------------SS------------------------------
--SSSS-S---------S-------S---S---------------S-S--------------------------------
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>forward_390
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--------------------------------------------------CAGGCAGGTCTAGGTACCCT----------
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>reverse_1596
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---------------------------------------------------------------------------TCAGG
TGGATCTGGTCGACT-----------------------------------------------------------------
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