>input_sequence_87329
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--------------------------------------------------ATGGACCGGAACATGACGGGGCTCCTGCTC
GGGTGTGTGGGCGCCGCCATGACGGTGCTGGCGTACCAGCAGACGGTGGTGTCCAGCACGCAGTGCATCGGCGCCGGCCT
CGCCGTCCTCGTCTGCGCTCTCTGCATCAAGGAAGGCTTCTTCTCCTTCTGA----------------------------
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>chr2A_1_TraesCS2A01G338500
GACAAAAAGGTAAAATAAAAAAACAAGCAAGTAAAGCCCCACAAATGGGCCGGCCCATGAATGCATACATGGGTAGGACA
TGCGTGAGAAAAGAAAGATAAAAAGTGTGAGAGCTAGGGATTGAACCCTAGTCTCATTGCCAGAAGATCTACCAGCCAAC
CACTCTGCCATTCATTTTTCTGTGTATTCTACTCGTCGCTCCCCTATAAAACAATGAAGGAGGTGGCGATTTTTGGTCCG
AAAAATTGAATCGTTTTCTACTTATGGGTGGCATTGGTGGGTAATTTTTATCAACTTGAAGGGTACTTTTAATGACGGAC
GACCAGAAGCTATAGCCGCTTTATTAATACACGCACCGAACATCCCAAAAATATCCAGAAAAAAAACAAATAGAAAAACA
AATAGAAACAGAAAGGAACAAAGGAAGAGAGAGGAGGGCCGTATCGTACAGGTAATGGGCTTGAGAAAGTTGAGGAATTG
ACACTCAAATTTGTGATCAGTCGAAAAACCCAGGTCAAGACAACTCACCA-------AAAAAAACGCAAATCTCAAAGCA
GAAATCGATGAGGAAAAAAAAACTAGCTGACCCAAAATCAATTTTCTGGCAGTTTACATATGGCTAAAATGATTTACGCC
TACAAAGG-CTAAAATGATTTATATTAAATCAAAAGCAAACAGTGAAGCTAATCAAACTATGCTT--AGTTCAAAATTGA
CGGGCGTTCAGACGAGCCGCGACGCCGGCGAGCCGCAAACGTCTTTCCCGGCTCCGAAAGACAGACGGCACCCCCGGGCG
ACCCTCGAAGCCCTCCATAAGCTCAACCCTCTCCACGCGCTCTCACCAGCAACGCACCAAGGCGTTGACCTCAGAGCTTT
AATTCCCCAACCCCCACCACCTCCCATCGCAGACTCGCAGAAGCATCCAAACAAACAAGAGAAGAAGTCGATCGAGAGCA
GCACCGGCAGCCGCGGAAGGGAGGCCAAGAGACGACCGAGCGGCGGCAGCATGGACCGGAACATGACGGGGCTCCTGCTC
GGGTGTGTGGGCGCCGCCATGACGGTGCTGGCGTACCAGCAGACGGTGGTGTCCAGCACGCAGTGCATCGGCGCCGGCCT
CGCCGTCCTCGTCTGCGCTCTCTGCATCAAGGAAGGCTTCTTCTCCTTCTGATGCCCGCCGCCCGCGTAGCGCACAGCTT
TTGCCGGTTTCAGTTTCCATATTCCTT---------------------------------------TGTAGCTCCTCCTG
GTTGGATCATCTGATCCGCATATGATTGCTGCAGATCGAAGTGGTTGTATCTTGTATTCTGTAATTTCCTCCCTTTTCTT
ATACATAC------------------------------------------------------------------------
-----------------------------------------------------ATAGTAGTTTTTTGTCTGTCTTGAAGC
GTGGCTGATTGCATCTC------TTTTGTTGTTGTTGTTGTGC--------GCTGATTACATCTCTTTTACGACTAA--A
TTGCGGTTTCTGCCTTTCTTGGATGCATACAACCAGTCAAATCCCCTAACCACCAAAGGAGAATCA-TTCGCCTAAAATG
GTTGACTTAATGTACTCCATTGCTTTTCGTACTACTTTTTGTACAAGAGACAGT---------CTAGTGTTTAACAGGAA
TACCTGCAAGCATCAGGAAATGAAATCCGCACAACTACAATAACA---------------------------TGGAATGC
CGATGAAGTGCCGTCCTACAATAGCATGCAGTTACCTGCTTTACTAGAAACAGAAATACTCATCTCGAACGTAAGTACAT
--TTTGAGCGTAGAACTATCCGTTCTGTACTATCCCTGCCTCATCTACAAACTGCCATGACACGAGACAACACTACGTAG
CTGCTGTTCAGTTCAGATGCGCTGTTGGAAATTTTGCAT-TGCCGCACAACACCAAGCAGACGGACAGAGGGGTGCCGCC
ACCATCATCTGAAGTCGTGAATGATCTTCAGAACTTCAGAACTCGTGAATGATCTTCTGCAGAGAAGAGTAAGTCCCACT
TGCGGCAACCAAGGAGCCGAGAACGATGATCATGACGATCAGCGCGACCTCGGCCCTGCTGCACCTCGCCGTGCCGAAGA
TTTTGAGGTAGCAAATGCACGGGAGCAGCATGGAGGCCATGACGCTGAGGAGCGAGCCGACGAGCGCCATGAGGTGGCCG
AAGAAGGGGACGGCGAGGGCCACGATGACCGTGCTGATGACGATGAAGGTCCTGATGAGCATGTTGAGGGAC
>chr2D_406
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-----AAACAGAAAAGAACAAAGGGAGAGAGAGGAGGGTTGGGTTGCACAGGTAATGGGCTTCAGCCTGTTGGGGAATTA
ACATCTAAATTTGTGATCAGTCGAAAAAAACAGATCAAAACAACTCACCAGAAGAAGAAAAAAACACAAATCTCAAAGCA
GAAATCAATGAGGAAAA-AAAATTAGCTGACGCAAAATCAGTTTTCAGGCAACTAACATATAGCTAAAATGATTTATGCC
TAAAAAAATCTAAAATGACTTATATTAAATCAAAA-CAAACACTGAAGCTAATCAAACTATGGTTATAATTCAAAAATGA
CGGGCGTTCAAACGTGCGGTGACGCCGGCGAGCCGCAAACGTCTTTCCCGGCTCCGAAAGCGAGACGGCACCCC----CG
ACCCTCGAAGCCCTCCATAAGCTGAACCCCCTCCACGCGCTCTCACCAGCAACGCACCAAGGCGTTGACCTCAGAGCTTT
AATTCCCCAACCCCCACCACCTCCCATCGCAGACTCGCAGAAGCATCCAG-CAAACAAGAGAAGAAGTCGATCGGGAGCA
GCACCGGCAGCCGCGGAAGGGGAGCGAAGAGACGACCGAGCGGCGGCAGCATGGACCGGAACATGACGGGGCTCTTGCTC
GGGTGCGTGGGCGCCGCCATGACGGTGCTGGCGTACCAGCAGACGGTGGTGTCCAGCACGCAGTGCATCGGCGCCGGCCT
CGCCGTCCTCGTCTGCGCTCTCTGCATCAAGGAAGGCTTCTTCTCCTTCTGATGCCCGCCGCCCGCGTAGCACTCAGTTT
CTTTCGGCTTCAGTTTCCGTATTCCTTTGCAGCTTAATTCGTTTCCACCACTCGTGCTTTCATATATGTAGCTCCTCCAG
GTAGGATCGTCTGATCCGCATAATCA------------AAGTGGTTGTATCTTGTATTCTGTAATTTCCTCCCTTTCCTT
ATACATAT------------------------------------------------------------------------
-----------------------------------------------------ATA-TAGTTCTTTGTCTGTCTTGAAGC
GTGGCTGGTTGCATCTCTTCTGTTTTTGTTGTTGTTGCTGTTGTGTTCGCTGCTGATTACATCTCTTTTACGACTATATA
TTGCGGTTTCTGCCTTTCTTGGATGCATACAACCAGTCAAATCGCCTAACCTCCAACGGGGAATCACTTCACCTAAAACG
GTTGACTTAATGTACTCCATTGCTT----TACTACTTTGTGTACAAGAGACAATTTAGCTCCACGAGTGTGTAACCGGAA
TACCTGAAAGCAGCAGGAAATGAAATCCGCACAACTACAATAAAATGATCCAGTGCATCTGAATTTTTACAGTGGAACGC
CGATGCAGTACCGTCCTACAACAGCACGCAGTTACCTGCTTTACTAGAAACAGAAATACTCATCTCAAACATAC---GTA
CATTTGAGCGTAGAACTATCTGTTCTGTACTATCCCTGCCTCATCTACAACCTGCCATGACAG--GACAACACTGCGTAG
CTGCTGTTCAGTGCAGACGCGCTGTTGGAAATTTTGCAT-TGCCACAGAACACCAACCATACGGACAGGGGT--GTT---
ACCATCGTCTGAACTCGTGGAGCACTTGG----CTTCAGAACTCGTGAATGATCTTCTGCAGAGAAGAGTAAGTCCCACT
TGCGGCAACCAAGGAGCCGAGAACGATGATCATGACGATCAGCGCGACCTCAGCCCTGCTACACCTCGCCGTGCCGAAGA
TTTTGAGGTAGCAGATGCAGGGGAGCAGCATGGAGGCCATGACGCTGAGCAGCGAGCCGACGAGCGCCATGAGGTGGCCG
AAGAAGGGGACGGTGAGGGCCACGATGACCGTGCTGATGACGATGAAGGTCCTGATGAGCATGTTGAGGGAC
>chr2B_687
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------------------------------------------------------AAACTATGTTC--AATTCAAAAATGA
CGGGCGTTCAGACGAGCGGTGACGCCGGCGAGCCGCAAACGTCTTTCCCGGCTCCGAAAGATAGACGGCACCCC----CG
ACCCTCGAAGCCCTCCATAAGCTGAA-CCCCTCCACGCGCTCTCACCAGCAACGCACCAAGGCGTTGACCTCAGAGCTTT
AATTCCCCAACCCCCACCACCTCCCATCGCAGAGTCGCAGAAGCATCCAAACAAACAAGAGAACAAGTCGATCGAGAGCA
GCACCGGCAGCCGCGGAAGGGAAGCCAAGAGACGACCGAGCGCCGGCAGCATGGACCGGAACATGACGGGGCTCTTGCTC
GGGTGCGTGGGCGCCGCCATGACGGTGCTGGCGTACCAGCAGACGGCGGTGTCCAGCACGCAGTGCATCGGCGCCGGCCT
CGCCGTCCTCGTCTGCGCTCTCTGCATCAAGGAAGGCTTCTTCTCCTTCTGATGCCCGCCGCCCGCCTAGCACCCAGCTT
CTTTCGGCTTCAGTTTCCATATTCCTTTGCAGCTTAATTCGTTTCCACCACTCGTGCTTCCATATATGTAGCTCCTCCTA
GTTGGATCGTCTGATCCGCATAATCA------------AAGTGGTTGTATCTTGTATTCTGTAATTTCCTCCCTTTTCTT
ATACTCCCTCCGTTCGGAAATACTTGCCATCAAAATGAATAAAAGGAGATGTATCTAGATGTATTTTAGTTTTAGATACA
TCCTTTTTTGTTCATTTTGATGACAAGTATTTTCAGACGGAGGGAGTACATATATAGTAGTTCTTTGTCTGTCTTGAAGC
GTGGCTGATTGCGTCT-TTTTGTTTTTGTTGTTGTTGCTGATGTGCTCTTTGCTGATTACATCTCTTTTACGACTAA--A
TTGCGGTTTCTGCCTTTCGTGGATGCATACAACCAGTCAAATCGCCTAACCTCCATCCGAGAATTACTTCACCCAAAATG
GTTGACTTAATGTACTCCATTGCTTA----ACTACTTTGTGTACAAGAGACAATTTAACTCCACTAGTGTTTAACAGGAA
TACCTGAAAGCATCAGGAAATGAAATCCGCACAACTACAATAAAATGATCCAGTGCATCTGAATTTTTACAGTGGAACGC
CGATCCAGTGCCATCCTACAACAGCATTCAGTTACCTGCTTTACTAGAAACAGAAATACTCATCTCAAACATACATAGTA
CATTTGAGGGTAGAACTATCTGTTCTGTACTATCCCTGCCTCATCTACAACCTGCCATGACAG--GACAACACTGCGTAG
CTGCTGGTCAGTGCAGACGCGCTGTTGGAAATTTTGCATTTGCCACAGAACACCAAGCAGACGGACAGAGGGGCGTT---
ACCATCGTCTGAACTCGTGGAGCACTTGG----CTTCAGAACTCGTGAATGATCTTCTGCAGAGAAGAGTAAGTCCCACT
TGCGGCAACCAAGGAGCCGAGAACGATGATCATGACGATCAGCGCGACCTCAGCCCTGCTACACCTCGCCGTGCCGAAGA
TTTTCAGGTAGCAGATGCACGGGAGCAGCATGGAGGCCATGACGCTGAGCAGCGAGCCGACGAGCGCCATGAGGTGGCCG
AAGAAGGGGACGGTGAGGGCCACGATGACCGTGCTGATGACGATGAAGGTTCTGATGAGCATGTTGAGGGAC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS---------S---------S-------------SS-SS-S-S---------------S--SSS----S------S
---SSS----------------------SS---S----S--------------------------S--------------
------S----------S----S--------S--------S-----S----SS-S------S--------------S---
--S---SS----------S----------------S------S-------------------S-----S-------S---
-----------------S-S-----------------------------------------S------------SSSS--
-----------------------S-----S--------------------------------------------------
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----------------------S---------------------------------------------------S-----
-----S--------------------------------------------------------------------------
-----------------------------------------------------------------------S-S------
S-SS---S------------------------------------------------------------------------
--------S-------------SSSSSSSSSSSSSSSS------------------------------------------
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--------------------------------------------------------------S-----------------
-------------------------------------S---SS-------------------------------------
-------------------------------------------S-------S----S-------------S---------
-------------------------SSSS---------S-------------S---------------------------
------S------------------------------------S---------------------------------S--
-----S---------------S--------------------------------------------S---S--SS--SSS
--------------------S-----------------------------S-----------SSS---------S-----
------------S----S--------------------------S--S-------------------------S-SSSSS
------S------S-----S-SS-SS-SSSSSS-----------------------------------------------
---------------------------------------------------S--------S-------------------
-------------S-----------------------------------S------------------------------
-------------S----------------------------------------------------------
>forward_205
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-------------------------ATTCTACTCGTCGCTCCCCT-----------------------------------
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>reverse_1306
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-------------------------TTGCTGCAGATCGAAGTGGT-----------------------------------
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