>input_sequence_87308
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------ATGTTTCTAGGCGCGATGCCCCGGAAGCCGAGCAAGGAGGCGGCGTACAAGGAGCTGCGCTTGCA
TCTCAGCATCATGGCGGGCTGCATCGCCGTCATCCGCGCCGCCCCCTACATCCTCCACTACCTCACCCGCGAGCCCGGCA
TGACGGAGCTCAAGCTCGAGCTCTAG------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>chr4A_1_TraesCS4A01G244400
CCAATGGGGGCGTCCAGAGGGGAGCAACTAATTGAGGACCGCTCGTTCGGGAACCTTTTCAAGGATCATTTGGAATGGGC
TGAGAGCACGCCATGTGTCGCGCTCTGGGTCTCCTTCCGGATTTTGTTTTTATTTTTACTTTTTTGCATGTATTTTCGGC
TTTTCAGATTTTTCTCTCTCTCATTTTTTCAGCTTTTCATCGGCCTTTCTTAGCTTTTCGACAAAAAAAATTCAAAAAGT
TTTTTCTCATGAAAAAACACGTTTTTTTGCTTTCACGAGAGGCACGATTTTGCTTCTACGGGAGGCACGGTCGTGCCTCT
TGGAAATTAAAAAAACGTGTTTACTCTTTTTTCCCCTTCATGAGAGACATGGTTTTACTTCCGCGAGAGGCATGATTTTG
CTTCCGTGACTGTGCCTCTCGAAACAAAAAAATCATGTTTTTTTCCTTCCGCGAAAGACACGGTATCACTTACATGAGAA
GCACGGATTTGCTTCCGCAAGAGCCACAAGTGTGCCTTTCGGAAACGGTTTTCAGAAAGGGAAAAAACATGCTCCC-GTG
TGGTTTTTTGTCTGGTTTTTTCGTGAAAAAAAGTTTGTGAAAACCTACCAACAAGCGATTTAGTTTTGAAGATCTCGACG
TGAGGAATCCAAGATGAAAACGGATCAAGATTTGAACGCGGTTTA---AAGAGATAAAACATAATTTGAATAAACGGATT
TACGAAAAAAAGGAAAAACTCGCAGGACTCCTATTTCGGTTCAAAAGAGGTCTCCGCGCCGAATAGGAGCACTCCTGATT
TCG-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TGGTAATTGGGCCGGGCCCAACGTGCGCGGAAATACGCAGT--TCG-CCAGGGTCACGGGCGTAAATACGA
CCCGTTTCC--------------------TCTCCAAGTTTAGCCACCGCAATCGCATCGTCCTAGGGTTTAAGCAGCAGC
---AGCAGCCCCGCCGCATCCAGATCCCCAACCCAAACCCTCG--------AACCCGGA-----------GAACTCGCCG
CCGACGACAGCCAAGATGTTTCTAGGCGCGATGCCCCGGAAGCCGAGCAAGGAGGCGGCGTACAAGGAGCTGCGCTTGCA
TCTCAGCATCATGGCGGGCTGCATCGCCGTCATCCGCGCCGCCCCCTACATCCTCCACTACCTCACCCGCGAGCCCGGCA
TGACGGAGCTCAAGCTCGAGCTCTAGG------------------------------TGATTCCTCCCGCCCACGCTCTT
CCTTCTCTAGGGTTTGGTCGATTTGGGTGCGTTGCGCGTGTGATCCGTTTTCG-----GATCGTCGTGCGGCCGCTCGGT
TTGGTACGGTATCATAGGGTTTCGTAGCCGTAGATCGGATTCTAATGA--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------GTGTCCTTATTACTAGGGTT
GCTAAAGCTTGTAATTCTATTCTTTCGTGTGTAAAGCAGGCGATCTGTTGGTTTTTTAATGATCTTTTAGTTTGGTAATG
CTGATTTGCAAACTGAGAAATTATTGAACCTAACTAATGACCTTCAACGA-GTAGATAGAAAGGAAAAGTTATGTTTCAT
GACAACTTTGTA-------------------------------------AAGATTATACTCCCTACGATCCATATTACTT
GTGAAGTTGTACTAACCTTGTACTGAACCAGCGACAAGTAATATGGATCGAAGGGAGTAGCATGTTTTAAAGAGTCCAAC
TAGCTTTTAGATAGGTTGTGATATTGAATTTGTTTAGCTGATTTGCCGTTCTCAAACTATGTTATAATCCCTTGTTTTAG
CAGTATCATTATGGTGATTGGAAGATCGATTTATTGGTTCATAACCCTTTTTTTAATAAATGCAGTAAGATTGAGTATTT
TATCTGTTTTGATCACAGTTGCACCTCTTGCTGTTATTTGTTATCTTGTTTAATTTTGGCCAATGAATCAAGAAGTATTA
ATGTATTGATGGTACTTGGCTCCTTTCTGAGAACAATGATAACTGTATTTTATGGCTTCATTGATGCAGTATCCAGTATG
TTCTGAATATAAATTTTCCTTTTTAGCATTATCTATTAGATTGTTCTATATTTACATACTACCTCCATCTCGGTGAACAA
GTCATTCGCGTAGTTCTAGGTCGACAATTTAACTATCTAAATATGTATTATATGTGACAAAAAATATATATTTAGAAACT
ACATCCGTGTAGAAATCTAATAATATACTTTTCATGACATATAACACATATTTAATTCCTTAAATCGATGA
>chr4D_469
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------CTTTCACGAGAG
GCACAGATTTGCCTCCGCGAGAGTCACGAGCGTGCCTTTCGGAAACAGCTTTT-GAAAAAGAAAAAACGTGCTCCCGGTG
TGCTTTTTTGTCTGGTTTTTTCGTGAAAAAAATTCGTCAAAACGTTTTTTATAAG--------------AGATCTCGACG
--------------TGAAAACGGTTCGAGATTTGGGCGCACGATTTATAAGAGATAAAAACGT-TTTTTATAACCGGATC
TACCAAAAAAGGAAAAAACTCGCAGGACTCCTATTTCGGTTCAAAGGAGGTCTCCGCGCCGAATAGGGGCACTCCTGATT
TCG-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TGGTAATTGGGCCGGGCCCAACGTGCGTGGCAATACGCAGT--TCCCCCAGGGTCACGGTCGTAAATACGA
CCCGTTTCC--------------------TCTCGAG----AGCCACCGCAATCGCATCGTGCTAGGGTTTAAGCAGCAGC
AGCAGCAGCCTCGCCGCCTCCAGATCCCCAACCCAAACCCTCGAACCCTCGAATCCGGAGA--------GGAACTCGCCG
CCGACGACAGCCAAGATGTTTCTCGGCGCGATGCCCCGGAAGCCGAGCAAGGAGGCGGCGTACAAGGAGCTGCGCTTGCA
CCTCAGCATCATGGCGGGCTGCATCGCCGTCATCCGCGCCGCCCCCTACATCCTCCACTACCTCACCCGCGAGCCCGGCA
TGACGGAGCTCAAGCTCGAGCTCTAGGGCGGCCCCGCTGCCCCCCCGCCCCCTGAGGTGATTCCTCCCGCCCACGCTCTT
CCTTCTCTAGGGTTAGGTCGATTCGGGTGCAGTGCGCGTGTGATCCCGTTTTCGGATCGATCGTCGTGCGGCCCCTCCGT
TTGTTACGGTGTCGTAGGGTTTCGTGGCCGTAGATCGGATTCTATGTGAGCTTGCGCGGTTGGACTACTCGCGGCTATCC
CCGCTGTGTTATCTGGGCACCGTGGTTTCCAATCAGTTTATGTTTGCTGTGTTGAATTTAGTTAGATTCATGGTCGTTTG
TTGGGAGCCAGAGTTATTGTTTCATGATGCTTGATGCACTCCGCTTTACTGGTGTGTTTCTGCAAGTTAATTGAGGTCGA
TTTCCCAACAGAAATAGTGGTGAATTATGCTGTCACCGTTTTATTCGGTTTACATGATGGGTGTCCTTATTGACAGGGTT
GGTAATGCTTGTAATTCTATGATTTCGTGTGTAAAGCAGGTGATCTGTTG-TTTGTTTATTATCTTGAAGTTTGGGAATG
CTGATTTGCAAACTGAGAAATTATGGAACCCGACTAATGACCTACAACAAGGTAGATAGAAAGGAAAAGTTTTGTTTCAT
AACAACCTACGTATAGCGTAAAAAGACAAAAAAAGCTGTTTGGCTCAATAAGATTATAT---------------------
------------------------------------------------------------CATGTTTTAAAGAGTCCAAC
TAGCTTTTAGATAGGTTGTGATATTGAATTGGTT----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>chr4B_795
AGGAGTTGCGCTCTCACCTCTACATCATGTCGGGTTGCATCGCCGTCATTCGCGCCGCCCCCTACTTCCTCCACTACCTC
ACCCGCGAGCCTGGCATGACGGAGCTCAAGCTCGAGCTCTATGGCAACCCCCGCCCCCTAAGATGAAATAGGTTTCCGGT
GAAATAGGTTGGTTTCACATATTTTCTAGTGAGAAAAGGTTTGTTTCACATTTTTCTAGGTGAAAATGGGTTTGTTTCAC
ATATGAAATATCAAAATAAAACGTGTTTGAAATGTATCAATGATTGGTCTAGTTCTAAAGTTCTTGGCAATAGGAGTTCA
AATATATAAATTATTTCATAGACAAAACTTATGTTAAAAAAATACGAGTGCTTTAAATTGTCTAAGATAAAATGAAGTCT
GTGGATTTGTTTGGGAGAAACAGAGAGAAGTGATGTCTGAGTGGCGTACTAAAATAGTATTGCGGTCTCACCAACTGACA
CTTATTAAATTGTACTTCCTCCGCAAACTAATATAAGAGCGTTTAGATCATTAAGTAGTGATCTAAACGCTCTTATACTA
GTTTATAGAAAGAGTAATACGTAGAAGCTGCAATACCTATACATTTGATATACATGTGAGTGGGCCATAGCCAACACAAA
TCACTGAACGAAACATACGGTGCTAGATCTATCGCTATGTAGTGATACCCCGCGCCAAAAAGAGTTTGCGCAAACAGACA
CCATGATGACCACTCGCAAGCCGAGTTGGTTCAGCCAGTTCGGAGTTTTTTCTTACGTTGTTTTCATGTTCGCTGCTTTT
GCTGCAACTTTTCTATTGGTGTTTTTGGATTTTCTTTATTTTGTTTGTTTAATACACTGTGAACAATTCTTTAATGTACA
ATGAACATTGTGTGAATACACACTAAACATTTTTATAATATACTACATCCGTTCCAAAATAGATGACTCAACTTTGTACT
AACTAGAGGGATATATATGATGAAAATTTCAAATTACATGTTGAACAATTTTAATAATTATTGAACATTTATTTTTGAGG
GGTTCTTTTTATTTTTTTATTTTTTTGAGAATCTGGTTCCTTTTTCTTTTGAGGGAATTTTGAGGGGTTCCTGGTCAATC
TCCTTTTCGTGGTAACTGGGCCGGGCCCATCGTGGGCCGAAAGACGCAGTTCTCT-CCCGGGTCACGGACGTAAAATATG
ACCCAGAACTCACCGGTTTCCTCTCCAAGTCTCGCG----AGCCACCGCAATCGCATCGTGCTAGGGTTTAAGAA-----
---AGCAGCGTCGCCGCCTTCAGATCCCCAACCCAAACCCTCG--------AATCCGGAGAAGCAGAGAGGAACTCGCCG
CCGACGACAGCCAAGATGTTTCTCGGCGCGATGCCCCGGAAGCCGAGCAAGGAGGCGGCGTACAAGGAGCTGCGCTTGCA
CCTCAGCATCATGGCGGGTTGCATCGCCGTCATCCGCGCCGCCCCCTACATCCTCCACTACCTCACCCGCGAGCCCGGCA
TGACGGAGCTCAAGCTCGAGCTCTAGGGCGCTT--------CCCCCGCCCCCGC--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>SNPs
SSS-SSS-S--SSS--SSSSSSSSSS-SSSSSS-SS-SSSSSS---SSSSSSSS-SSSS-SSSSS-SSS-SSSSSSSSS-
SSSSSSS-SS-SSSSSSSSSS-SS--SSSS---SSS-SSS--SSSSSSSSSSSSSSSSSSSSS-SSS--SSS---S---S
SSSSS--S--SS-S--S-SSSSS--S-SSSSSSSSSSSS-SS-SS-SS-S-SSS-S-SS-SS----SSSS--SSSSSSSS
S-S-SSSSSSSS----SS-SSSS-S----SSS-SSSSSS-S-SSS-S-S-S-S-SSS-S-SSSSSSS-SS-S-SSSS--S
SSS-S--S--SS-SSSSSSSSSSSSSSS--S-SSSSSSS-SSSSS--SSSSS--SS-S-SS-SSSSSSSSS----SS-SS
S-SSSS-SSS-SS-SSSSSSS-S-S-S--SSSSSS-S-SSS-SS-S-S-SSSS-S--SSSS-SSS--S---S--S-----
----S-------------S--------S--S---------------S-S---S-----S---------S-----------
--S-----------------------------S-SSS-S----SS-SSS--S---SSSSS-S-SSSSS------------
-S-SSS-S-S--SS---------S----------SS---SSS-----------------S-S-S----S----------S
---S------S-S--------------------------------S---------------------S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------S-----------
---------------------------------S-SSSSS--------------------S-------------------
----------S------S-----------------------------------S--------------------------
-----------------------S--------------------------------------------------------
S-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------S--------S------SS--------------SS---SS--------------------S---S--
---S------S--S-----------S------------------SSSS--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------SSS------
-S---S--------------SS------------------S---------S---S--S--S-----SS-------S----
------------------------S-----SS-----------S----S----------------------S--------
S-----S-SSSS----------------------------------------------SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------
------------------------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_400
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------CCGCGAGAGGCATGATTTTG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>reverse_2711
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------CGGTGAACAA
GTCATTCGCG----------------------------------------------------------------------
-----------------------------------------------------------------------
