>input_sequence_87305
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-------------------------------------------ATGTGCTTCAAGTTGAACAGCAAGGAGAGAGTGGGGT
GCTGCCTGCTGGTGTTGCTGTGCATCGCGCTCCTCGTCGGCGTCCTCTTCGGGATGGGCGTCTTCCGCCACGGCTACGAC
AAGTTCACCGAACTCGGCCGCAACCACACCTGCTACGACTGCCACACCAACTAG--------------------------
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>chr2B_1_TraesCS2B01G350700
GGAGCGCCAGCGTCGGGCCTACGAGGAGATCAAAGCTCGGCGCCGCGGACGCGACGAGGGCGGCATCGTCGTCCTCGACA
GCGATGACAAGGACACGCTCGGGCCGTCCCATCCCCCGCGCGTCGGCGACCCTGGTCAGGGGTGCAGCAGGGACGGCGGC
GGCGCAGGCGAGACGCAGGGCGGCGACGACTACACCCGATTCTACAGTCTCCTCGGCATGTAGAAGGCGGGTGGCGACAA
CGGCATAGTAGGGCTAGGCACAGTTGTTTTTAAATCATGTTTTTTGTTTTTTTGTACAAATTTGAATGAAATCGCCGAGT
TTGTGTCGTGTTTGTGCCGATTTGTGGCCGGCCTGGGGCGGCGACTGGGAACATGTTTGCCCCCACGCCGAAATTAACGC
CGGTTCGGTCCCAGGCGGCGCTTTTTTGGCGTCCTGGGGGCCGAACGACTGGAGATGCTCTTTAGACATAGACATGTGTC
TTGGGCTAGGCCACAAGGATCGAGATTCCTCCTTATAAACGGGGTCAATTTGTTAAGGTTTTTGATCCGGTTTTTTTGAT
CACTCTCCTGGCATTATGACCATTTTGAGCAATATATTCAGGTGAAGGGACTCCTCCCCCGGTGATTAAAAAAAAAGTTC
GAGATTCCTGGCATGGCGGAAAGGCAACCAGGAGA----TTTCCTATCAC----CCGACCGTTCCACACAGTCT-AGCTT
CCCTGGCAAGCGATGCCCTGCACACCACCGTTGAAGCCAGAAAGAAGGGCGCTCGTTGGAGTGGTTACATAGTTGTCCAG
CTCCAT------CAGTTTTGCTCTCTCTT--TTCGAGCGAAGTGTAGCCGCCGGGTTAAAATTTTCTCTGATAAAAGGGC
GTGCCCGCGCTGCTCCAGCCTGCCTGCCTGCACGTTCCAAAACCCTCACGCCGCAGCACCGTCGCTTGCCTAGAGAGAGA
G--------------------AGA------------------------GATCAAGGTTTATATAGGGGAAGAAAAGAGAG
GAGGGCAGGCAGGCA----------------------GGAAGGATGTGCTTCAAGTTGAACAGCAAGGAGAGAGTGGGGT
GCTGCCTGCTGGTGTTGCTGTGCATCGCGCTCCTCGTCGGCGTCCTCTTCGGGATGGGCGTCTTCCGCCACGGCTACGAC
AAGTTCACCGAACTCGGCCGCAACCACACCTGCTACGACTGCCACACCAACTAGCCACACCCTCACCGGCTCACGCGCCG
TCGGCTTGCTGGCCTACTCATGTGCATGT--------ATGTATGTATGTATAGCAAACTGTGCAGAATTTTGTTGCTCTG
GTACGCAACCGAGGCTACAGACTGTTTTTGTGTTGCTGCTGCTGCTGTTACTGTCTTCTACTCCTTCTGATCCATATCAA
TTGTCGTTCAAACTGAAGTATCTAGAACAGAAATAC--------------------------------------------
------GGGCTCTTGGTTTCTTGGGTTGCATCGATCATTTTGTAGGAACGATCTGGAATGGTTTGGCCTATTTCCAGACC
TTATAAACCTTAAGGCCGTGCTTGGATTGAGTGTATTGTAATACAGGTGTATCAATTCTACAAGTGTATCTTACGGGATT
AGGCTGATTTCCGGCCGGAAACAATACATACGTCTAGGGGCCTGTAATTTTTACAAGTATATCCGAGGGAAATATGATAA
TCCAAGTGCGGCCTAAGAGGACAAATATATATAATACTACTCCCTCCGTTCCATAATAAATAAGTTAAACTAAAACCACA
AAAATTATACTTCCTCCGTTTCTAAATATTTGTCTTTCCTTGTTTCAAAAAAATAATTTGTCTTTCTAGAGATTTCAACA
AGTGACTACATACGGAGCAAAATGAGTGGATCTACACTAAAAAATATGTCTATATACATCCGTATGTGGTAGTCCATTTG
AACTCTCTAAAAAGACAAATATTTAGGAACGAAGGGAGTATTATGAAAAGCAGGGAGTA-------------------GG
TTGCAACTCAACAAGTACTGCAGTCAACAAACAAGCAAAATTAGGGTCGACGAAACTTAGAAATGCTATGGAAACTTTTT
GCATATGCAAGAGATCTCTAAGAAAAAAAATACACCGTAGACAAAAAGGAAGGGGAAAACCAGAAAAAAGTCAATCATGT
ACAAATCATTTACAAGAGAAGAAAAAATATATTTCATG-TTACAAGAAACACCTCTAAAACTCTCCACAAGATATATTCT
ACTTCCAGTCAA
>chr2A_639
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------------------------------------------------------------------------------TC
GAGATTCTGTGCATGGCGGAAAGGCAACCCGGAGAGAGATTTCCCGTCAGCGGACCGACCGTTCCACACAGTCTTAGCTT
CCCTGGCAAGCGATGCCATGCACACCACCGTTGAAGCGAGAAAGAAGGGCGCTCGTTGGAGTGGTTACATAGTTGTCCAG
CTCCAT------CAGTTTTGCTCTCTCTT--TTCGAGCAAAGTGTAGCTGCCGGGTTAAAATTTTCTCTGATAAAAGGGC
GTGCCCGCGCTGCTCCAGCCTGCCTGCCTGCATGTTCCAAAACCCTCACGCCGCAGCACCGTCGCTCGCCTAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGA------------------------GATCAAGGTTTATATAGAGGAAGAAAAGAGAG
GAGGGGG-------A----------------------GGAAGGATGTGCTTCAAGTTGAACAGCAAGGAGAGGGTGGGGT
GCTGCCTGCTGGTGCTGCTGTGCATCGCGCTCCTCGTCGGCGTCCTCTTCGGGATGGGCGTCTTCCGCCACGGCTACGAC
AAGCTCAGCGAGCTCGGCCGCAACCGCACCTGCTACGACTGCCACACCAACTAGCCACACCCTCGCCGGCTAGCGCGCCG
TCGGCTTGCCGGCCTACTCATGTGCATCTATGTATGCATGTATGTATGTATAGCAAACTGTGCAGAATTTTGTTGCTCTG
GTACGCAGCCGAGGGTACGGACTGTTTTTGTGTTGCT---GCTGCTGCTACTATCTTCTATTCCTTCTGGTCCATTTTTA
TTGTCGCTCAAACTGAAGTATCTAGAACGGAAAAGTCTGAAATACGTCTAGACACATTCTTTTCAGCAACGACTAATATG
GATACAGGGCTCTCGGTTTCTTGTGTTGCATCGATCATTTTGTAGGAACGAGCTGGAATGGTTTGGCCTACTTCCAGACC
TTATAAAC------------------------------------------------------------------------
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-----------CCTAAGAGGAGAAAATATATATGTAATACTCCCTCTGTTCATTTTTATAAGGCTTTGTAAACGTTTCAG
ACATTATGCAAAATAACTTAATTTCATT----------------------------------------------------
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---TGTCTGAAATGACTTATAAAAGTGAACGGAGGGAGCAATAAACTACTCCCTTTTGTCTCAAAATGTAAGACCTATGG
TTGTAACTCAACACAAATTGCAGTCGACAAACAAGCAAAGTTAGGGTCGAAGGAACTTAGAAATGCTTTGGAAACTTTTT
GCTTAT------GATCTCTAAGGAAAAATAATAGACAAACATTATT---AAGGGAAAACAGGAAAACAAGTCAAT----T
ACAAATTATTTACAAGAGAACAAAAAAGAACAATTTATTTTACAACAACTACCTCTAAAACTCTCCACAAGATATATTC-
------------
>chr2D_639
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------------------------------------------------------------------------------TC
GAGATTCCGTGCATGGCGGAAAGGCAACCCGGAGAGAGATTTCCTATCAC----CCGACCGTTCCACACAGTCT-AGCTT
CCCTGGCAAGCGATGCCCTACACACCACCGTTGAAGCCAGAAAGAAGGGCGCTCGTTGGAGTGGTTACATAGTTGTCCAG
CTCCACCTCCAGCAGTTTTGCTCTCTCTCTCTTGGAGCAAACTGTAACC-----------ATTTTCTCTGATAAAAGGGC
GTGCCCGCGCTGCTCCAGCC----TGCCTGCACGTTCCAAAACCCTCACGCTACAGCACCGTCGCTCGCCTAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCAAGGTTTATATAGAGGAAGAAAAGAGAG
GAGGAGG-------AGGGGGGCAGGCACAGGCAGGCGGGAAGGATGTGCTTCAGGCTCAACAGTAAGGAGAGGGTGGGGT
GCTGCCTGCTGGTGCTGCTGTGCATCGCGCTCCTCGTCGGCGTCCTCTTCGGGATGGGCGTCTTCCGCCACGGCTACGAC
AAGTTCACCGAACTCGGCCGCAACCACACCTGCTACGACTGCCACACCAACTAGCCACACCCTCGCCGGCTCACGCGCCG
TCGGCTTGCTGCCCTACTCATGTGCAT------------GTCTGTATGTATAGCAAACCGTGCAGAATTTTGTTGCTCTG
GTACGCAGCCGAGGGTACGGACTGTTGTTGTGTTGCT---GCTGCTGTGGCCGTCTCCTACTCCTTCCGGTCCATGCTAA
TTGCCGCTCAAATTGAAGTATCTAGAACTGAAATAC--------------------------------------------
------G-------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
--------SS-------------------S--------------------------------------------------
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--------------------------------------S-----------------------------------------
------------------------------------------------------------------S-------------
-----------------------------------------------------------------S--------------
-----SSSSSSSSS----------------------------------------------------------S-------
--------------S-----------------------------------------------------------------
----------------------------------------------------------------S---------------
---------------------------S----------------------------------------------------
-------S------S---S------------------SSS-----------------------------S-----S-S--
------S---------------------S---------------------------------------------------
-------------S---------S---------------------------S------------------S---------
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS----------S---SSSSSSSSS--S---------S----SS-SS--S-SSSS--SSSSS-SSSSSSSS
-S-S-SSSSSSSSSSS-S-SSS-SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS-S---S---S---SS---SSSSS-----S------S-S--SSSS-SS-SSSSSSSS---------------------
---S---------SSS-S-------S-------------S----------S-S--------------S------------
--S---SSSSSS----------S-----S-SSSSS-SS-S-SS-SSSSS-----S---SSSSS---S--------SSSS-
------S-------------S------S-SSSS-SSSS-------S--SS-----------------------------S
SSSSSSSSSSSS
>forward_491
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-----------------------------------------------------------------------ACATGTGTC
TTGGGCTAGGC---------------------------------------------------------------------
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>reverse_1706
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-------------------------ACATACGTCTAGGGGCCTGT-----------------------------------
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