>input_sequence_87304
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------------------------------------------------------------------ATGTGCTTCAAGTT
GAACAGCAAGGAGAGGGTGGGGTGCTGCCTGCTGGTGCTGCTGTGCATCGCGCTCCTCGTCGGCGTCCTCTTCGGGATGG
GCGTCTTCCGCCACGGCTACGACAAGCTCAGCGAGCTCGGCCGCAACCGCACCTGCTACGACTGCCACACCAACTAG---
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>chr2A_1_TraesCS2A01G331500
ACCTCTCGGTCGTGATGTATCCATCGTTCAGACAGTGCCGTGCCGAATCGTGCAGCGAGCGTTATGGGTGATGCGTTTGA
AGCGACAGGTTTGGCCGGCCGGCCGGCCCATGGTGGTGTCATGTCTGGGACAAATGTTGGCCGGAGCATTTGCCTC-TGT
CTCTTCACCGTCTTACGTTTCAGGATCGGGACGAATTAAAACCTCGACGGCGATCAGTTTCTTATAAGCTTTATCAAAGT
GTTAGAACAAATTTCTGATAATAACCCCTCGCATAAATGCGCGTCCCAATCGAATTGATTCCATCCTGTCAAGCCCGTCG
TCCGTCCATCCATCCATGCCCTCCCAGTCCTAGTCTTCCTCCATATGCGTTGTCAATGGAGGACACCCCCAACCCCAATC
AGCCAAGCCGCACGCATTATCCTCTTCCATCTTCTATCTATCTAAAAGGCAAAAGACAAATATTCCGCAGCAAAAGATGG
AGGAAAAGCAGAGCCGAGCCGCCTGTTGCTCTCTGCAAATTGATTCCCCCCACATGCCCCTCGATGCCAAGATGACACAT
CACGGCATCAATAATCCCGTCTTGT-------------------------------------------------------
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------TAGACATGTGTCTTGGGCCAGGCCACACG-----GGA-------------------------------------
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---------------------TCGAGATTCTGTGCATGGCGGAAAGGCAACCCGGAGAGAGATTTCCCGTCAGCGGACCG
ACCGTTCCACACAGTCTTAGCTTCCCTGGCAAGCGATGCCATGCACACCACCGTTGAAGCGAGAAAGAAGGGCGCTCGTT
GGAGTGGTTACATAGTTGTCCAGCTCCAT------CAGTTTTGCTCTCTCTT--TTCGAGCAAAGTGTAGCTGCCGGGTT
AAAATTTTCTCTGATAAAAGGGCGTGCCCGCGCTGCTCCAGCCTGCCTGCCTGCATGTTCCAAAACCCTCACGCCGCAGC
ACCGTCGCTCGCCTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA------------------------GATCAAGGT
TTATATAGAGGAAGAAAAGAGAGGAGGGGG-------A----------------------GGAAGGATGTGCTTCAAGTT
GAACAGCAAGGAGAGGGTGGGGTGCTGCCTGCTGGTGCTGCTGTGCATCGCGCTCCTCGTCGGCGTCCTCTTCGGGATGG
GCGTCTTCCGCCACGGCTACGACAAGCTCAGCGAGCTCGGCCGCAACCGCACCTGCTACGACTGCCACACCAACTAGCCA
CACCCTCGCCGGCTAGCGCGCCGTCGGCTTGCCGGCCTACTCATGTGC----ATCTATGTATGCATGTATGTATGTATAG
CAAACTGTGCAGAATTTTGTTGCTCTGGTACGCAGCCGAGGGTACGGACTGTTTTTGTGTTGCT---GCTGCTGCTACTA
TCTTCTATTCCTTCTGGTCCATTTTTATTGTCGCTCAAACTGAAGTATCTAGAACGGAAAAGTCTGAAATACGTCTAGAC
ACATTCTTTTCAGCAACG----ACTAATATGGATACAGGGCTCTCGGTTTCTTGTGTTGCATCGATCATTTTGTAGGAAC
GAGCTGGAATGGTTTGGCCTACTTCCAGACCTTATAAACCC---------------------------------------
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--------------------------------------------TAAGAGGAGAAAATATATATGTAATACTCCCTCTGT
TCATTTTTATAAGGCTTTGTAAACGTTTCAGACATTATGCAAAATAACTTAATTTCATT---------------------
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----------------------------------TGTCTGAAATGACTTATAAAAGTGAACGGAGGGAGCAATAAACTAC
TCCCTTTTGTCTCAAAATGTAAGACCTATGGTTGTAACTCAACACAAATTGCAGTCGACAAACAAGCAAAGTTAGGGTCG
AAGGAACTTAGAAATGCTTTGGAAACTTTTTGCTTAT------GATCTCTAAGGAAAAATAATAGACAAACATTATT---
AAGGGAAAACAGGAAAACAAGTCAAT----TACAAATTATTTACAAGAGAACAAAAAAGAACAATTTATTTTACAACAAC
TACCTCTAAAACTCTCCACAAGATATATTCAGATTTAGACATATAATAAAAACAAATTAACACATATCATCCAGCCAAAT
AGCAACAAGCTTCATCCAATTAAACTCAACC-AT---TTTCGATGGTTCATGTTCAGTGAGTCAAAGCTCAAATTTCACA
AGCTCAAGTGTCCTTATAGAACCACGGGTTACCTAGTCAGGCACACATCTGCAACTACTCATAACAAAAAATGGTGTTCA
ATAACTTTAAAGCTTGAGGACCCAAATGTTTTGAGGTGATTTA
>chr2D_1
ACCTCTTGGCCGTGATGTATCCATCGTTCACGCAGTGCCGTGCCGAATCATGCAACGAGCGTTGTGGGTGATGCGTTTGA
AGCGACAGGTTTGGCCGGCCGGCCT----ATGGTGGTGTCATGTTTGGGACAAGTGTTGGCCGGAGCATTTGCCTC-TGT
CTCTTCACCGTCTTACGTTTCAGGATCGGGACGAATTAAAACCTCGACGGCGATCAATTTCTTATAAGCTTTATCAAAGT
GTTAGAACAAAATTTTGATAATAACCCCTCACATAAATGCGCATCCCAGTCGAATTGATTCCATCCTGTCAACCCCGTT-
---GTCCATCCATCCATGCCCTCCCAGTCCTAACACT------------TTGTCAATGGAGGACACCC------CCAATC
AGCCAAGCCGCATGCATTATCCTCTTCCATCTTCTATCT-TCTAAAAGCCAAAAGACAAATATTCCGCAGCAAAAGATGG
ACGAAAAGCAGAAGCGAACCGCCTGTTGCTCTCTGCAAATTGATTCCCCCCACATGCCCCTCGATGCCAAGATGACACAT
CACGGCATCAATAATCCCGTCTTGT-------------------------------------------------------
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------TAGACATGTGTCTTGGGCTAGGCCACACCACACAGGA-------------------------------------
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---------------------TCGAGATTCCGTGCATGGCGGAAAGGCAACCCGGAGAGAGATTTCCTATCAC----CCG
ACCGTTCCACACAGTCT-AGCTTCCCTGGCAAGCGATGCCCTACACACCACCGTTGAAGCCAGAAAGAAGGGCGCTCGTT
GGAGTGGTTACATAGTTGTCCAGCTCCACCTCCAGCAGTTTTGCTCTCTCTCTCTTGGAGCAAACTGTAACC--------
---ATTTTCTCTGATAAAAGGGCGTGCCCGCGCTGCTCCAGCC----TGCCTGCACGTTCCAAAACCCTCACGCTACAGC
ACCGTCGCTCGCCTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCAAGGT
TTATATAGAGGAAGAAAAGAGAGGAGGAGG-------AGGGGGGCAGGCACAGGCAGGCGGGAAGGATGTGCTTCAGGCT
CAACAGTAAGGAGAGGGTGGGGTGCTGCCTGCTGGTGCTGCTGTGCATCGCGCTCCTCGTCGGCGTCCTCTTCGGGATGG
GCGTCTTCCGCCACGGCTACGACAAGTTCACCGAACTCGGCCGCAACCACACCTGCTACGACTGCCACACCAACTAGCCA
CACCCTCGCCGGCTCACGCGCCGTCGGCTTGCTGCCCTACTCATGTGC----AT------------GTCTGTATGTATAG
CAAACCGTGCAGAATTTTGTTGCTCTGGTACGCAGCCGAGGGTACGGACTGTTGTTGTGTTGCT---GCTGCTGTGGCCG
TCTCCTACTCCTTCCGGTCCATGCTAATTGCCGCTCAAATTGAAGTATCTAGAACTGAAA---------TACGTCTAGAT
ACATTTATTTCAGCAACCAACAACTAATATGGATACAGGGCTCTCGGTTTCTTGTGTTGCATCAATCATTTTGTAGGAAC
GAGCTGGAATGGTTTGGCCTATTTCCAAACCTTATAAACCT---------------------------------------
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--------------------------------------------GAAGAGGAGAAATATATATAATAA------------
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-------------------------------------------------------------------------AAACTAC
TCCCG-TTGTTTTAAAACGTAAGACCTATGGTTGTAACTCAACACGAACTACGGTCGACAAACAAGCAAAGTTAGGGTCG
AAGGAACTTAGAAATGCTTTGGAAACTTTTTGCTTAT------GATCTCTAAGAAAAAAAATAGACG-AACATTATT---
AAGGGAAAAGAGGAAAACAAGTCAAT----TACAAGAGAAC----------CAAAAAAAAACTATTTATTTTACAACAAC
TACCTC--AAACTCTCCACAAGATATATTCAGATTTAGACATAAG--AAAAACAAATTAACACATATCCTTCAGCCAAAT
AGCAACAAGCTTCATCCGATTAAACTTAACTGAGTACTTTGGATGGTTCATGTTCAGTGAGTGAAAGCTCAAATTTCACA
AGCTCAAGTGTCCTTATAGAATCACGGGTTACCTAGTCAGGCACACATCTGCAACTACTCATG--AAAAAACAGTGTTCA
ATAACTTTAAAGTCTGTGGACCCAAAGGTTTTGAGCTGATTTA
>chr2B_1
ACCTCTCGGCCGTGATGTATCCATCGTTCACGCAGTGCCGTGCCTAATCATGCAACGAGCGTTGTGGGCG----------
AGCGACAGGTTTGGCCGGCC--------CATGGTGGTGTCATGTTTTGGACAAATGTTGGCCGGAGCATTTGCCTCTTGT
CTCTTCACCGTCTTACGTTTCAGGATCGGGACGAATTAAAACCTCGACGGCGATCAATTTCTTATAAGCTTTATCAAAGT
GTTAGAACAAAATTTTGATAATAACCCCTCGCATAAATGCGCATCCCAATCGAATTGATTCCATCCTGTCAACCCCTTT-
----TCCATCCATCCATGCCCTCCC-------GTCTTCTTCCGTATGCATTGTCAATGGACACCG---------CCAATC
AACCATGCCGCATGCATTATCCTCTTCCATCTTC----TATCTAAAAGGCAAAAGACAAATATTCCGCAGCAAAAGATGG
ACGAAAAGCAGAACCTAACCGCCTGTTGCTCTCTGCAAATTGATTCCCCCCACATGCCCCTCGATGCCAAGATGACACAT
CACGGCATCAATAATCCCGTCTTTGTTAGAGCATCCACGCCCCCTAGGCCCCCTTTTTTGTCGCCGGCGCCGAAAATTTG
GCCCAGCCGCGCACCCAAAATCTCAATTTTCGCCGGCTTGGGCCATTTTGACGTCGGTGGATCCAGGCTGAACCCGACGC
GCTGGGAGGCGCCTGGGGGCGTCGGGGAAACATATTTTGGCGCGAACGGGAATGAGCCTGCCGAGTCAGCGACTCGCCGC
CTTCGTCGTCCTCATCGCCTCGGTTTCTGGGGGAATCAATGCCAAGGCTGCCGCGCCAGTCAGCCTTCCATTGATGCCTC
ATGGGCGGCGCAGTGAAGGCGCCGCGACGCGCGTCCTGCCCGCTCCCGCCACGCGGCACCCGGCGGGCAGCTTCTCACCG
CCCAACTTAGGCTATAAAAGCCGACCTCCCGCCACCGGTGAATGCCACGCCGTTCTCGCCACCTCTCGCCACCGAAGCCC
CTCTCTCCCACTCTTCCCGCGCTGACGACCAATGGTCGAACGTTACCCAGGCGACGCCGCGGCGGCGAACGGCTTTGGCC
GACGCCATCTGCGCGAGGACGAGGCGCGCCTCCTCTACGAGGCCGACTACCCGGCGCCCCCAGACATGCGAGTGCCGGGC
TCGTGGAGACTGAGCGCCGGTGGCGTCTCGGTGCTCCCGGTGCCCACCGGCGCTAAACGGCGCGCCGAGATAGCATGCAT
CCTTTCGTCGCTGTCGGAGGCACATCGAAACAAGCCGAGGTACGCTGCCAACAGCCACACGCTGTGGACGATGTACTTCG
ACCGCCGCCACGCCGACCAGGTCACCTCCGCAAACAGCGTCGTGCCCCGCGGCCGCCTCAACGCCGACTACGGCGCGAAT
GGTGGGGCGTGCCCGGCCGCACCCTCGAAGCCGTCCTCGACCACATCGAGGCTGGCAACACGCCGCGCCCCGAGTACCCG
GCGCCCCCGTCCTTCTCTCGCCGCCGCGGTAGTTCTTGGCCGCCGCGGAGAATGGAGACGGCGACCTCCTTGTCGTCGGA
CTCCGGTTTGCTTTCCTCCGGGTCGTCGGCGCTTCGCCCGGTCAAGCCGGAGCCACAGGAGACGCCGCTTGGTCGCCGCA
CCCGCATCGGCGCCCTCGTCATTAGAGAGGGCGGCCGCCCTTCCCCTCATCCCCTCCGCCTCGTCCAGCCGAAGACCGAG
CCGGGGTTGCTCCCCATGAAGAAGGAGCACGAGGAGATGGCCGCTGCCGACGAGACCGCCCTCAAGTGGTTGAAGGCGGA
CTACGTCCGCGAGCAGGTGGAGCGCCAGCGTCGGGCCTACGAGGAGATCAAAGCTCGGCGCCGCGGACGCGACGAGGGCG
GCATCGTCGTCCTCGACAGCGATGACAAGGACACGCTCGGGCCGTCCCATCCCCCGCGCGTCGGCGACCCTGGTCAGGGG
TGCAGCAGGGACGGCGGCGGCGCAGGCGAGACGCAGGGCGGCGACGACTACACCCGATTCTACAGTCTCCTCGGCATGTA
GAAGGCGGGTGGCGACAACGGCATAGTAGGGCTAGGCACAGTTGTTTTTAAATCATGTTTTTTGTTTTTTTGTACAAATT
TGAATGAAATCGCCGAGTTTGTGTCGTGTTTGTGCCGATTTGTGGCCGGCCTGGGGCGGCGACTGGGAACATGTTTGCCC
CCACGCCGAAATTAACGCCGGTTCGGTCCCAGGCGGCGCTTTTTTGGCGTCCTGGGGGCCGAACGACTGGAGATGCTCTT
TAGACATAGACATGTGTCTTGGGCTAGGCCACAAG-----GATCGAGATTCCTCCTTATAAACGGGGTCAATTTGTTAAG
GTTTTTGATCCGGTTTTTTTGATCACTCTCCTGGCATTATGACCATTTTGAGCAATATATTCAGGTGAAGGGACTCCTCC
CCCGGTGATTAAAAAAAAAGTTCGAGATTCCTGGCATGGCGGAAAGGCAACCAGGAGA----TTTCCTATCAC----CCG
ACCGTTCCACACAGTCT-AGCTTCCCTGGCAAGCGATGCCCTGCACACCACCGTTGAAGCCAGAAAGAAGGGCGCTCGTT
GGAGTGGTTACATAGTTGTCCAGCTCCAT------CAGTTTTGCTCTCTCTT--TTCGAGCGAAGTGTAGCCGCCGGGTT
AAAATTTTCTCTGATAAAAGGGCGTGCCCGCGCTGCTCCAGCCTGCCTGCCTGCACGTTCCAAAACCCTCACGCCGCAGC
ACCGTCGCTTGCCTAGAGAGAGA--------------------------------------------GAGAGATCAAGGT
TTATATAGGGGAAGAAAAGAGAGGAGGGCAGGCAGGCA----------------------GGAAGGATGTGCTTCAAGTT
GAACAGCAAGGAGAGAGTGGGGTGCTGCCTGCTGGTGTTGCTGTGCATCGCGCTCCTCGTCGGCGTCCTCTTCGGGATGG
GCGTCTTCCGCCACGGCTACGACAAGTTCACCGAACTCGGCCGCAACCACACCTGCTACGACTGCCACACCAACTAGCCA
CACCCTCACCGGCTCACGCGCCGTCGGCTTGCTGGCCTACTCATGTGCATGTAT------------GTATGTATGTATAG
CAAACTGTGCAGAATTTTGTTGCTCTGGTACGCAACCGAGGCTACAGACTGTTTTTGTGTTGCTGCTGCTGCTGTTACTG
TCTTCTACTCCTTCTGATCCATATCAATTGTCGTTCAAACTGAAGTATCTAGAACAGAAA---------TACG-------
--------------------------------------GGCTCTTGGTTTCTTGGGTTGCATCGATCATTTTGTAGGAAC
GATCTGGAATGGTTTGGCCTATTTCCAGACCTTATAAACCTTAAGGCCGTGCTTGGATTGAGTGTATTGTAATACAGGTG
TATCAATTCTACAAGTGTATCTTACGGGATTAGGCTGATTTCCGGCCGGAAACAATACATACGTCTAGGGGCCTGTAATT
TTTACAAGTATATCCGAGGGAAATATGATAATCCAAGTGCGGCCTAAGAGGACAAATATATATAATACTACTCCCTCCGT
TCCATAATAAATAAGTTAAACTAAAACCACAAAAATTATACTTCCTCCGTTTCTAAATATTTGTCTTTCCTTGTTTCAAA
AAAATAATTTGTCTTTCTAGAGATTTCAACAAGTGACTACATACGGAGCAAAATGAGTGGATCTACACTAAAAAATATGT
CTATATACATCCGTATGTGGTAGTCCATTTGAACTCTCTAAAAAGACAAATATTTAGGAACGAAGGGAGTATTATGAAAA
GCAGGGAGTA-------------------GGTTGCAACTCAACAAGTACTGCAGTCAACAAACAAGCAAAATTAGGGTCG
ACGAAACTTAGAAATGCTATGGAAACTTTTTGCATATGCAAGAGATCTCTAAGAAAAAAAATACACCGTAGACAAAAAGG
AAGGGGAAAACCAGAAAAAAGTCAATCATGTACAAATCATTTACAAGAGAAGAAAAAATATAT-TTCATGTTACAAGAAA
CACCTCTAAAACTCTCCACAAGATATATTCTACT-----------------------------------TCCAGTCAAAC
AGCAACAGGATTCATCCGATAAAACTCGACCTAT---TTCGGATGGTTCATGTTGAGTGACTCAAAGTCAGAATTTCTAA
CGCTGAAGTG-CCTTACAGAACCACAGGTTACCTAGTTAGGCACACATCTGCAACTACTCATAACAAAAAA-GGTGTTCA
ATAACTTTAAAACCTGAGGACCCAAATGTTTTGAGGTGATTTA
>SNPs
---------S--------------------SS-----------------S----S--------S----------------
------------------------SSSS----------------S-----------------------------------
--------------------------------------------------------S-----------------------
-----------S--S---------------------------S-----------------------------S-----SS
SSS-----------------------------------S---S-----S-------------------SSSSSS------
------------S-------------------------------------------------------------------
-S----------S----S--------------------------------------------------------------
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------------------------S-------------------------------------------------------
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------------------------------S------------------------------------SS---SSSSS---
-----------------S----------------------S-------------------S-------------------
-----------------------------------------------------------------------S--------
-------------------------------------------------------S------------------------
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--------------------------S---S---S-------------S-------------------------------
--------------SS----------------S---------------------SSSSSSSSSSSS--------------
--------------------------------------------------------------------------S----S
-------S--------------S--S-----------------------------S----SSSSSSSSS----------S
-----SS----------S--------------------------------------------------------------
---------------------S------------------S---------------------------------------
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--------------------------------------------------------SSSSSSSSS------------S--
--SS-SS--S-SSSS--SSSSS-SSSSSSSS-S-S-SSSSSSSSSSS-S-SSS-SS--S---------------------
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-----------------------------------S---S---S---SS---SSSSS-----S------S-S--------
----SS----S-S----S---------------------------S--S-------------------------------
-----------------------------------------------------S-----S-SSSSS-S------------
---------S---------------------------S--------------------S---S-----------------
-------------------------------------------SSSS---------------------S-----------
-----------------S----------------------S---------------------------------------
-----------------------------------------------------------------------S--------
-------------S-----------------------------
>forward_2578
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------------------------------------------------------------------------------CG
ACCGTTCCACACAGTCTT--------------------------------------------------------------
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>reverse_3893
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----------------------------------------------------AAAGTGAACGGAGGGAGCAA--------
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