>input_sequence_87298
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-----------------------------------------------------------------------ATGCCGATC
GCCGGCTGCTTCTGCTTCGGCGGGAAAGGGAAGGCGGGCGGCGGTGCTGCCGCCAGGGCC------GCGCGCCCGCGCTA
CGTGCCCAAGAGGGGCAAGGTGTTCCGGGCCGTGCTGGGCGCGCTGGTCAGCTGCTACCGCCCCGCCAGGACCGGGCCTC
TGCCGCGCTGA---------------------------------------------------------------------
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>chr6B_1_TraesCS6B01G329500
TCGGGGAGCGCGTCGGCGATGACAAGAAAGGAGGAGACCGAGAGGCGGACGGCGAGCTCGGTGATGAGCGACGAGACGCG
AAGGTCGGCGGAAGGGTGGAACACCACCAACGTGATGGCGAGCGGCACGACGAAGCAAGCGAGGCCAACGGCGACGGCGC
GGCCACTGGTTCGGCAGATCTTTTAATAACTGGCAACTTTGCAAAAGACCCCCTGGTTCCCTCCATATTCGAGCGGCTGA
GACGATGTGACAGTCAAAGCACACTTGGCAGCGGTTGACTCGGGCCAGATCAGCATGTATGTAGACCAAACCGTATAATG
GATCGTAGATGACCTCTAGAACAAGTTTGATGACTGTATTGCGGGTATTTGTAACAACAGGGACTAAAGCTAACGCCAAT
ACAAGTAAATGGACCTGTAGTGAATTTTTTTCTTTTTGGATTTTATCGGGGTCCCAAATTTAACACCCGGCCC----GCG
ATGCCATGCTCGGCGCGCGGCCGCAGCTAGCGAGAGAGCGCCCCGGCGCCGAGCGGGCGTTGATCCACTCAACTCAAACC
TTCTTCAAGTCCTTGACCTTTCAGAAAACGCGGCAATCCCCGTCAGCGTCAGTGCCAGCTCCCAAGCCAAGCCAG--GAC
CACCCCGGACCCCGATGCCGATGCCGATGCGTCGCCCCCTCTCCCCTGCCTGCCCACCTGTCTAGGGATCCCGATGCGGC
CTA-------CCTGAGCCTGACACCCCGGCCCGGAGCCTCACACGCCCAGAACAGCAC----------CACGACGACCCA
GTCGTCCCGCCCCCGCCGGTATAAATCAAGCTCGACGCCCCCACAAGCTTCTCACCTCAATCAGCA------AAGCGACC
TCAGCAGCCATCCCCGAGCTCG--CTCCCAACACCGCACGAGCACCACATCCTTGGCGCCATTCGAGCCACCAAGTGTCA
GCTAAGCCCCCTGCGTTGCGCTGTGCTGCGATCGCGACGCTCTGCTCTGCGTGGCCTGTGAAATGTGCGGCATGCCGATC
GCCGGCTGCTTCTGCTTCGGCGGGAAAGGGAAGGCGGGCGGCGGTGCTGCCGCCAGGGCC------GCGCGCCCGCGCTA
CGTGCCCAAGAGGGGCAAGGTGTTCCGGGCCGTGCTGGGCGCGCTGGTCAGCTGCTACCGCCCCGCCAGGACCGGGCCTC
TGCCGCGCTGAGGCTCGGCTCGGCTCGCCCGCCGCCGCCGGCGTCCTTGTTCGGCAGCGCGCGGGGGGCTCGCGTCGGCC
GGAGACCGGGCATTCGC--------TCCGCCGGAGTCGACCAACCATTGTAGTAGTAGTAGCAGCTCAACTTTGCCAAGG
CCCTGTTTTTAGCGCGAGCTCCACATTTCCACAGGGTCTTGAC--------GTTGGATCTAGCAAACACAA-TAAGTGCA
GCC-TTTTCTTCTTCTTTTTGTTTGCCTCAAATGTCTGGTTTGAAATTTGAATAGGCACATTGCTTTGCATTTTG-----
-------------TGCTTTGAATTATTGCTACCTTGCACTCCTGAGAACCTTGTGAATTAATTCCTGAAAGCCACCGTGC
ATCACGAACTCTGAACTGAAGTCAGCTTCATCAGGTGTTGGATTACTTCAT----GAGAGAAGAAGGCACGAGAGATTTA
AGAACACCAATACCATCTTTGAATAATAACTGTACGGGGCAGGGAAGCAGTCAGCGGAGGGAATTGTTTGCATCGACGGG
ACAG-----TTGTCTCTCTCGACGCAGACAGGACTGCACAT-----GACGAAAAACAAATGACGGGCAAAGT-----CGT
AGGTCAGGGTCAGCGTTTTGACCTGAGTCTTGGCGT----CGGCCTTGGCTAGTTGCATTGGTGCCA-GATCTGTGATCG
TCCTGGCCGGCACTGCGGTGGCCGGATCAGATGAAAATTCAGCACTTGACAAATCTTGTCCCGTCGTCTCAAC-------
------AATCTTTGCTTCTCAAGTCTGAACATTGACCAGGCGGCATTCTTGC-----TAACTCGGTTGGTTCCACCTCAA
CCTCATCGTA--CTACTCGAATAAAAGGAGGACCTTCTT---TTCCAAACCAAAGCACAAGGACCTCCCAATGAGGCCAA
CTCCAGCGCGCGACACCGTCCGGTTCGGCCCCGTCCGTTTGGGCAAAACAGATAGACCCCACGGCCCAGCGCGCGACGGT
CTGGACCCATCTTGTCCATTCTCTGTCCGGCCCGACTCATTTCGAATGCAAACA
>chr6D_455
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------------------------------------------------------CAAAGTTAACACCCGGCCCCGCCGCC
ATGCCATGCTCGGCGCGCGGCCGCGGCTAGCGAGGGACTGCCCCGGCGCCGAGCGGGCGTTGATCCACTCAACCCAAACC
TCCCCCGTGTCCTTGACCTTTCAGAAAACGCGGCAATCCCCGTCAGCGTCCGTGCCAGCTCCGGAGCGAGCCAGGGCGAC
GACCCCGGACCCCGATGCCGATGCCGATGC-----------------------CCACCTGTCCACGGATCCCGATGCGGC
CT-------------GCCTGACACCCCGGCCCAGAGCCTCACACGTCCAGAACACAAAAGAAAGGCAGCACGACGACCCA
GTCGTCCCGCCCCCGCCGGTATAAATAAAGCTCGACGCCCCCACAAGCTTCTCACCTCAATCAGCATTCAGCAAGCGACC
TCAGCAGCCATCCCAGACCTCCTCCTCCCG--ACCGCACGACCACCACATCCTTGGCGCCATTCGAGCCGCCG-------
-----------------GCGCTGCGCCGCGATCGCTCTGCCCTGCTCTGCGTGGCCCGTGAAATGTGCGGCATGCCGATC
GCCGGCTGCTTC------GGTGGGAAAGGGAAGGTGGGCGGCGGTGCCGGCGCTGCGCCTGCGCCAGCGTGCCCGCGCTA
CGTGCCCAGGAGGGGCAAGGTGTTCCGGGCCGTGCTGGGCGCGCTGGTCAGCTGCTACCGCCCCGCCAGGACCGGGCCTC
TGCCGCGCTGAGGCTCGGCTCGCCCG--CCGCCGCCGCCGGCGTCCCTGGTCGGCAGC-----GGGGGCTCGCGTCAGCC
GGAGAGCGGGCATTCGCAGCGCTAGTCCGCCGGAGTCGACCAACCAGTGTAGTAGTAGCAGC---TCAACTTTGCCGAGG
CCCTGTTTTTAGCGCTAGCTCCACA-TTCCACAGGGTCTTGAAATTAGGATGTTCGATCTAGCAAACACAAATAAGTGCA
GCCTTTTTCTTCTTTTTTTTTTTTGCCCCAAATGTCTGATTTGAGTAGGCACAT------TTGCTCTGCATTTTGTTAGA
AGAAACCAACCACTGTTTTGAATTATTGCTATCTTGCCCTCCTGAGAACCTTGTGAATTAATTCCTGAAAGCCATCGTGC
ATCATGAACTCTCAACTGAAGTCAGCTTCATCAGGTGTTTGATCACTTCATTCATGAGAGAACAAGACACGAAAGATTGA
AG---------ACCATCTTTGAATAATAACTGTACGGGGCAGGGAAGCAGTCAGCGGAGGGAATTGTTTGCGTCGACGGG
ACAGGATGGCTGTCTCTCTCGACACAGACACGACTGCACGGGAGC-----AAAAACAAATGACCGGCAAAGT-----CGT
AGGTCAGGGTCAGCGTTTTGACCTGAATCTTGGCGTCGGCCGGCCTTGGCTAGTTGCATTGGTGGACGGATCCGTGATCG
TCCTGGCCCGCACTGCAGTGGCCGGATCAGATGAAAATTCAGCAGTTGGCAAATCTTGTCGCCCCAAAC-----------
---------CTTTGCTTCCGAAGCCTCAACATTGACCAGGCTGCATTTTTGCTACTGTAACTCGGTTGGTTCCAGCTCAA
CCTCATCGTATACTACTCAAATAA------GACCTTCTTTCCTTCCAAACCAAAGCACAAAGACCTCGCAATGA------
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>chr6A_455
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------------------------------------------------------CAAATTTAATACCCGGCCCCGCCAC-
--GCCATGCTCGGCGCGCGGCCGCGGCTAGCGAGAGACTGCCCCGGGGCCGAGCGGGCGTTGATCCACTCAACTCAAACC
TCCCCCCTCTCCTTGACCTTTCAGAAAACGCGGCAATCCCCGTCAGCGTCAGTGCCAGCTGCCCAGCTCCCA--------
-ACCCGGAACCCCGATGCCGATGCCGACGC-----------------------CCACCTGTCCACGGATCCCGATGCGGC
CTCCCTCCTGCCTGAGCCTGACACCCCGGCCCGGAGCCTCACACGCCCACAACACAAAAGAAAAGCACGACGACGACCCA
GTCGTCCCGCCCCCGCCGGTATAAATAAAGCTCACCGCCCCCACAAGCTTCTCACCTCAATCAGCAT-CAGCAAGCGACC
TCAGCAGCCATCCCCGAGCTCCTCCTCCCGACACAGCACGACCACCGCATCCTCGGCGCCATTCGAGCCTCCAAGTGGCC
GCTAAGCCGCCTGCGCTGCGATCGCT-----------------------------CTGTGAAATGTGCGGCATGCCGATC
GCCGGCTGCTTC------GGCGGGAAAGGGAAGGTGGGCGGCGGCGGCGGT------GCC------GCGCGCCCGCGCTA
CGTGCCCAGGAGGGGCAAGGTGTTCCGGGCCGTGCTGGGCGCGCTCATCAGCTGCTACCGCCCCGCCAGGACCGGGCCTC
TGCCGCGCTGAGGCTCGGCTCA-----CCCGCCGCCGCCGGCGTCCTTAATCGGCAGC-----GGGACCGGGTATTCA--
----------------CAGCGCTAGTCCGCCGGAGTCGACCAACCAGTGTAGTAGTAGTAGC---TCATCTTTGCCAAGG
CCCTGTTTTTAGCGCGAGCTCCACATTTCCACAGGGTCTTGAC--------GTTCGATCTAGCAAACACAA-TAAATGCA
GCC-TTTTTCTTCT-TTTTTGTTTGCCTCAAATGTC--------------------------------------------
------------CTGTTTTGAATTATTGCTACCTTGCCCTCCCGAGAACCTTGTGAATTAATTCCTGAAAGCCATCGTGC
ATCACGAACTCTGAACTGAAGTCTGCTTCATCAGGTGTTTGATTACTTCATTCATGAGGGAACAAGACACGAAAGATTGA
AG---------ACCATCTTTGAATAATAACTGTACGGGGCAGGGAAGCGGTCAGCGGAGGGAATTGTTTGCGTCGACGGG
ACAGGATGATTGTCTCTCTCGACGCAGACACGACTGCACTGCACAGGACGAAAAACAAATGACGGGCAAAGTCGTAGCGT
AGGTCAGGGTCAGCGTTTTGACCTGAATCTTGGCCAGGTTGGGTACGCTGGTGTC-----------CGGATCTGTGATCT
TGTTGGCTCGCACTGCAGTGGCCGGATCTGATGAAAAATCAGCACTTGACAAATCTTGTCGCGCCGTCTCAAGAATCTGA
CCTCCAAATCTCTGCTTCTGAAGTCTGAACATTGACCAGGCTGCATTCTTGC-----TAACTCGGTTGGTTCCAGCTCAA
CCTCATCC--TACTGCTCGAATAAAAGGCTGACCTT-----CTTCAAAACCAAAGCACAAAGACCTCGCAATGA------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------S
------------------------S------------SS-----------------------------------------
-S-SS-SS-------------------------------------------------------S---S-SS-SS------
S-----------------------------SSSSSSSSSSSSSSSSSSSSSSS---------S-S---------------
--S---------------------------------------------------SS-S----------------------
--------------------------S-----------------------------------------------------
---------------------S-------S-----------S---------------------------S-------S-S
--------S------S-------S--S--------SSS--S---------------------------------------
------------SSSSSS----------------S------------S-S---SSS------------------------
--------S-----------------------------------------------------------------------
----------------------S-SSS----------------------S--------SSSSS-------------S---
-----S----------------------------------------S---------------SSS---------------
------------------------------------------------------S-------------------------
--------------S-----------------------S-----SSSSSS-SSSSSSSSS-----S--------------
---------------S---------------------S------------------------------------S-----
---------------------------------------S----------------------S---S-----S-----S-
--SSSSSSSSS------------------------------------------------------------S--------
------------------------------S--------SS---------------------------------------
--------------------------S-------------------------------------SSS-------------
--------S-------S-------------------------------------------S--S--------S-------
-------------------S---------------------S--------------------------------S-----
----------------------------SS------------------------------S------S------SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_300
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----------------------------------------CGGGCCAGATCAGCATGTAT--------------------
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>reverse_2270
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-----------------------------GCCCGACTCATTTCGAATGC-----
