>input_sequence_87292
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-----ATGGCAGACGGTAAGAAATCCAGCTCCGGCTTCTGGGCGACGGTGGCGT---------CTTGCTTTCGCCCACCC
AAGGC---GGTGGCAAG---CACCGCCGGCCGGACCACCACGTATGATCCAGTCGCGGGGATGGTCGCGGCGGCCAAACA
TTTCTCCGGTGCTCACAAGATAAACTTTGGATGA----------------------------------------------
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>chr5D_1_TraesCS5D01G327600
GACCGGCACGGACCTCGTGCTACAGACGGGCAGCTGTGGCAGCCTGTAGTGCCGTCCATGCTTCACTCGAGGAATGAGAA
GGGAGCGGCGACGGGTAGAGATTGAGGTGGCTACAAGCCTGGCTCACCGCCGTTCCATGCTTGACTCGTGGTCGGCAAGG
TGGGGTAGGAGAAGAAGAATATGTACGCGAGGGAAAATACCGGGAGTTTTACTTTTGTTTTGGCTCTGTAAAAGGAATGT
GGGAAGCGGAAAATTATTGTAACCGTTGGATGGAGAAGGAGCACGGACGGGAGCACCGAACGGGAGCAGGCAAGCCCCGT
CCGACCGGCACGGGAACACGGACGAATAAACGAGACACGATCGAAGAA--------------------------------
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-------------------------------------------------------------------------AAACGAG
GCTAAGGGAGAAAGTTTCCTCCCTTCCCTTATTAACTTTCGTTGTT-GTTGTTGGGGAGAATCGAACACAGATGGCT---
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-------------------------------------------------------------TAAGTGAAAATAGAACTCA
CTCGCCGTTGCGGCACGAGGCTCTCCCCCACTGCTGT-------------------------------------------
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----GCGACGAGCGCTGCCGCGTCAATCACTCCGCGACTGAATTTGCCGCA--TTGTTTTCTCACGAGCTACACAACGTG
GCCTATTGACCGGTTGACCGTTCAACTTTCTCC-GAGTAAGCTGTGAAAGTGATCGATCAATCAACCATTTTTAACACCT
ACGTTGGCATGACTGACCGGGAAATGTTCCTATCGAGCCCCTCGT------TCAGCGAGCGAGGAACGTTCACAAATCAT
AACTAGTAGGAC---------------------------GGATGCA--------CGAGGAGTATCATCTTGGCCAGTAAG
TTGAGTCTGATGTTGACCACCCAAAGCAAACGTTTTGTACACGGGTGTGGGGACCATTCTCACCGTGGTCGCCAAGCCAG
CAGAACCTGGCGATGCTATATGTATGTGAAGCAA--------------AACTCCTCATCGGCACAAGAGAACATATCT--
--------AAGAGACGGACCAACAAACGTGAAGGTTAGAGAGGTTCAGTTCCTTCCATATATTACTGCTACCTACTACTC
CGCCCATGGCAGACGGTAAGAAATCCAGCTCCGGCTTCTGGGCGACGGTGGCGT---------CTTGCTTTCGCCCACCC
AAGGC---GGTGGCAAG---CACCGCCGGCCGGACCACCACGTATGATCCAGTCGCGGGGATGGTCGCGGCGGCCAAACA
TTTCTCCGGTGCTCACAAGATAAACTTTGGATGATTCATGCCTCCCATCTCTGCTGGG--TATACGGTGATTGTACATAT
GTGTATATATGTAGTTCTTATTGAAATCTCTAAG-------AAGACTTATATTTAGAAACGGAGGAAGTATAAGGTCTAA
GCTATACTTTCAAGCCTCGGTTACGATCCCTGTTCTGTGGGGATCAATATTTGTTCTTGTTTTTGCTGCCGCCGTCGTTC
AGTGACTCCGAATAATGGTCCACCGGAAAAGAAATTTGATCCGAGGTAACGGGGCAAATAGAGAATGGATTCTACTCCCT
CCGGTTCCACAAAAGCTCCTGATTTACAGC-----CATAGTCACCAGAATACGTCAAACAATCAACTTAAACCCAGAACG
ACAACTATTATTGTCAAAAGATGGAATACGTATATCCCAAACCAATAGAGTAATTGTTGGTCAAATGCCCCAATTTTGCG
CAATGGAGCTTCTTCTCTAGGGATGCAAGTGGACAGCATCCGCATGTCCGCGACCATCCTCCGACAAAAAAGTTAAACTA
ACACGGTTATGAAAGCAATGAAGATT-GTGTAACTTCTGCTTCACAGACGGTCGCTGACATGCGGACGCCGTTCGCTTGC
ATCCGTAATATTCCTTCACTTTTCATATGTTCGGCCCAGCACTAGTGCAAAATCGGGCTTTAGTCCGGTTCGTAAGGACT
TTTAGGGTGTGTTTGATAGTCTGCACGGAAAGTGCATGAGGCTAAAAGTTCTTCATCAAACCCACTTTTCGCTGTTTGAT
AGGGTGCATGGGCTCCTTTGAGCTATGCTCAACCCATGCAAAAAGGGCCTCAACTATGCTCGCTCGAGCACCCCCAGCGA
GGCGAGCCGGGGTCAGCTAGGCTGCGTTCGACCCACGACCCGCTCGAACTACCACCCCTCCCGAACCCCATCTCCCTCGT
GACCCCATTTTTTGACCTAGCCGACCCTCTTCAACCTCGTCGCCGCCGCCGTGGGAGGTAGCGCCTCCACCCTTCCTCCC
TTCTTTCAC
>chr5B_330
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---------ACGGGAACACGGACGAATAAACGAGACACGATCGAAGAAGGGACCATTATTTTTTTAAGAGCAGCCCCTCG
TCCCGTTCCCTCATGTCGCCCTCTCGAGGGCGACTCGGGGGCGACCAACCTCCCCATCCGCCTCCCCCCTTCTCCTCCTT
TCCTCGCCGCCGCCGGAGACGGGTGTCGGGTCCCCCGCGCGGCCGCCGATGAGGGTGGCGGCGAGGCCCTCGGCCGCGAC
GCCGCTCGGGCTCGGGCCTAGGGTTTGAGGCGGCGGCCTCTGCTGGTGAGAGCGGCGTCGTCCCGGTGGCGGGCGGCACT
CGCCGGTGTTGAGGGTCGCGTCTACTCGGCCCCGCGGGCGGCGAGTTGGCGGTGGATGCGGGCGCCGCGTGGAGGGATCC
CCTGCTGCTCTCCTTCGCCAATCTGAAGACGGCGCCGCCGTGCTGCTGCTTCCTCCTCGTCAGTCCGGCCAGATCCGGTG
GCTGACTACGCAGATATGGGGTTGGGAGCTCTGGATCGGAGTAATTTCTTGGCCGGCTGTGGCGGCCACGACGCCGGCGG
CGCTCCAGACGTTGTTTCCTTCTTGAAGGCGGTTTCGAGATCCAGCTCCCTCCCCCTCGTCCTCCCCCTGCACCCGGGTG
AAAACCCACAGCTTTGGTTGGGCGGCGGCGGTGCCCGGCTACGTCACCTTCTTGAAGGCGCCGCTTTGGGTCCGCAGGGA
GGTGGGACAGCTGCAGCGCGTTCTTGGTGTTCCTGATGGCGGCGGTTCTCTTTAGTGGTGTCGCTTCGCCATGGCGGTCG
GCTGGCCCGGCTCTCATGGTGATTGTGGTGCTCAACTCTTCGTCGTGTCTTCCTGGGGTGCTCCCGTTCAGAGAGGCTGG
AGGTGGAGCGGCTTCGTCTTGCACGGAGCTTCGGTGGAGATGTCAAGTCATGTCTGACCGACAGGTGCTACGCCTTGTCA
TGCCTGGTCGGCAGGTGCTACGCACGACAGATCTTCCAAAGACTTCAAGTTGTGTCGGCTAGTGGTACTTGGCAGCATGG
TGCTGAGGTGTATCAGTGGCTACCGCGACGTGCTCAGCTGTTTGCGCGCAGGGAGGAGGTGTCGTTGGGCGCCGTGGTGG
CGTCGACGATAGCTGGACCGAGCAAGGTTGATGCATCAGTACAGTTCTGAAGATGGAGCGGTGGCAGTTGGCGGCGGCGG
CCTCTGAGTGCATGCCGGACCGGTGAGACCCATGCCCGACAGGCGTCCTGGATGGGACCTCAGGTCTTAAATGTTAGGTT
TGGCTGCGATGTCTGTTTGTTATTAGGCCCAGGCTATCTGCGCCCCTTCATCAATTGGATAGGTGTAGCGAAGGTTTGTT
GCTTAGACGGCGGCTTTAATCTTATTATTGTATTACTTTGTAAGGTCTTGTGAGAATAATTAATAAAGTGACCATATGCA
TCGCCCAGATGCAGAGGCCGGGGGTTATCCTCCTTTTCTAAAAAGAACAGCTTCCTTC----------------------
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---------------------------------------------------------------------CAAAAATCCAG
GCTAAA-----------------------------------TTATTAGTAGTTGGGGAGAATCGAACTCAAAGGGCT---
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-------------------------------------------------------------TAAGTGGAAATAGAACAAA
CTCGTTGTTGCGGCAGGAGGCTTTCCCCCACTTGAGTAAACTAGTCAATGTGTACGTACAATGCATGTTAATTTGGAAGT
ATATTAAGTGCATGTGGATATTAAATAGGATATTATTTGCGTGTTATTATAGATTAGCACTATATTTGGCATGAAATTAA
CTGCACGCTAAACGTGTTGAGCGTTCGACATTGAAACAGTCTAGGTCGTTGGATTGACATGATTTTTTTTGACGAAAAGA
TGGCCCTAGGGCCATATTTCATTGATTAATCAGAAAGAGAAATACAAATTGCAGTAGAGCTACAGTTAGGGAGATCAGCG
TGTTTTGAAGCTGGTTTCCAGCCGGCACGACCAGTATACAACAACAACAAGAAGATGATCTGCGGCACTCAAGGTGGCTC
AAAGAGTCTGTCTAACAGGTTTATACCAGCCGCCGACCAGCTTCTCGCCTCATCCTTGATGCGTCTCATGAGATGTGGAA
CAGTGCACTCGGCGGCGTTGAAGACGCGGTTGTTGCGTTCTTTCCAAAGCATCCAGGAAACCAAGCAGATGGCCGATTTC
CAGGTCTTCTTTTCCTCACCCTGTAGCAAGCTCGGCTGCGCGCTCCAATTGTCTTTCAGGGTTTGTCTTAGCAGTGGTGC
AGCCACCATTTGCCTGAGCTGCAGGAAGGAGCCTCCAAGATTGTCAGTGATACCCATCAACAGCCGCTTGGTGTAGGTGC
ACTCTACCAGCAAGTGTTTGGCCGTCTCCGGTAATTGACATGATTTGATGGCCGAGATTAATTGGATCTGCCCTTTGGGT
CTTTTTATATTGGTATAGATATAGATATAGATAGTTAAAAATCATCACATTTGTCACTAGTGTATTACAAAACTACCGCT
ATTGCCAAAAATCATAGAAGACGACCACTTATATGCCAGGTGAGTAACAAATTACACTGATTCACAGATTGGCTCGCACA
AACAGCAAAACAGATTGGCGAGACCCACTTGTCAGTCCAACATGGCATGTCTATGTGTACACTTTGTTGAGGTGGAACAT
GGGTCCCACATGTCATCCACCCACCTCCTTTTCCCTCTCTTCTTCTTTCCCATCCTCTTCTCCTTCCCCGTCCTCCTCTC
TCTGGTCGCCAACATGCCTTGTGGCCCCGTCGTGCTCCACCCCACTTCCGAGGATGACGGCGAGATCTGGCTGGAGCCCT
CCTCCACGTGTTGGCTCGATGGTGAGATCCAGCCGTCCTCGGCCTTCTCCCACTGGGGCACGCGCACGGTGCGAGTCCAA
CGGAAGCGGCGGGGCACGGTGGTGCATCTCGGGTGCCTCCCGCTAGGACACGTGCACCCGGCGGATCCGTTCCCGGTGAC
GGGAGCTCCGGCGGAAGCGGCGGGCCGCAGTGGTGCATCTCAGGTGCGGCCATGGTTGCGGTGCTCCCACTGGGACACGC
ACACCCGGCTCAGCCTTCTCTCGTTGGGACACGGGCACTCGGCCCGCCCTTCTCCTGCTGGGACAGCGCACCCAACGGAT
CTGTTCCCGACGATAGGAGCTTTTATGGAAGCGGCGTGTCTCGGTGGTGCATCTCGAGCGCGGCCATGGCTGGAGTGCCG
TTGCGAGAGAGAATAAAGAGATTGAGAGGAGGGAGAGGAAGGAACAAAGGAGGAGGAAGAGGAAGGAGCAGAGGCACGGG
AGGTTCGGCGGGGTCCGGTGGCCGGCCGGTGACGACTGCCAGAGACAAGGAGGGCGGGAGGAAGGAGAAGGAGGAGAAAT
AAGACGTCTGGCTGACATGTGGGACCCCCGTCCACCTCAACAGGTCAACACATGGACTAGGTCTAGTTTTCGCCACATCA
GCCACAGACGGGTCCCATCCGTCAGTTCTGCTGTTAAAGACAACTTATTTTCGAATCAGTGTGTTTTATTAGTACTCACT
TGACATAGAAGTGGTGTTCTTTTGTGATTTTCAGCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAAAAGA
ACTGGCGACGAGCGCTGCCGCGTCAATCACTCCGCGACTGAATTTGCCGC------------------------------
----ATTGTCCGATTGACTGTTCAACTTTCTCC-GTGTAAGCTGTGAAAGTGATCGATCAATCAACCATTTTTAACACTT
ACGTTGGCA----TGACCGGGAAATGTTCCTATCGAGCCCCTTGTTCAGCGTCAGCGAGCGAGGAACGTTCACAAATCCC
AACTAGGAGTATTGTCCCTTTTTCTTTCTTTCTTGGAAGGGGCGCACCAGGACTCCAGGAGTATCATCTTGGCCAGTAAG
CTGAGTCTGATGTTGACCACCCAAGCAC----------ACAGTTGTGTGGAGACCATTCTCAACGTGGTCGCCAAGCAAG
CA----------ATGCTATATGTATATGAAAGCTAGCCCCGCGGCAGCAACGTGAAG-----ACTAGAGAACATCTAGTC
TAGCACTGAAGAGACGGACGAACAAACGTGAAGACTAGAGAGGTTCAGTTGCTTCCATATACTACTAGCTAG--CTACTC
CGCTCATGGGAGACGGTAAGAAATCCAGCTCCGCCTTCTGGTCGACGGTGGCGTCTTGGTTAGCTTGCTTTCGCCCGCCC
AAGGGCAAGGCGGCGAG---CACCGGCGGCCGGGCCACCACGTATGATCCAGCCGCCGGGATGGTCGCAGCGGCCAAACA
TTTCTCCGGTGCTCACAAGATAAACTTTGGATGATCCATGC----GATGTCTGCTGGC--TATACGGTGATTGTACATAT
GTGTATATACGTAGTTTTTATTGAAATCTCTAATCTCCAAAAAGACTTATATTTAGAAACGGATGAAGCATAAGGTCTAA
GCTATACTTTCAAGCCTCGGTTACGATCCACGTTCTGTGGGGATCAATATTTGTTCTTGTTTTTGCTATCGTCGTCGTTT
AGTGAGTCCGAATAATGGTCCACTGGAAATGAAATTTGATCCGAGGTAACGGGGCAAAAAGAGAATGGATTCTACTCCCT
CCGGTTCCACGGAAGCTCCTGATTTACAGTACAATCATGGTCACCAGAATACGTCAAACAATCAAATTAAACCCAGAACG
ACAACTATTATTGTCG-AAGATGGAATACGTATGGCCCAAACCAATAGAGTAATTGTTGGTCAAATGCCCCATTTTTGCG
CACTGGAGCTTCTTCTCTAGGGATGCAAGTGGACAACATCCGCATGTCCGCGACCATCCCCCAACAAAAATGTCAAAGTA
ACACCGTTATGAAAGCAATGAAGATTAGTGTAACTTTTGCTTCAGCGGTCGGTC-------GCGGACGCCGTTCGCTTGC
ATCCCTAATCTTCCTTCACTTTGCATATGTTCGACCCAG-----------------------------------------
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>chr5A_330
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---------ACGGGAACACGGACGAATAAACGAGACACGATCCAAGAAGGGCACAGCTTCCTTCTCTACTA---------
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------------------------------------TCTAAAAAGAACATAAGGTTCCTTTTCCTGCCGACCGACCGTGT
TCTGCCAACCTTCGTCCATCCACTTTATCTTTTTTTCTTGGTTGGCAGGTGACGATTCAATTTAATCATCATAATTACAA
TGACCCAATTCGCAATCATCATAATTACAAAATTTTGGCTCACGTAGCAGCATGGGCACATACCTAGTGCAAAAAACGAG
GCTAAGGGAGAAAGTTTCCTCCCTTGAT--------TTTCGTTGTTAGTAGGTGGGAAGAATCAAACTTAGATGGAGCAT
CTCCAACAGGCGACCAAAAAGAGCTCTGCGCATTAAAAATTCGTTTTTTTTACCGCCGAACAGCCCTAGAAGATGCTGTA
GCGCTAAAATGTTTTGGACGCGCGCTGAAAAACGCTATCACGCGCAGCATATTTTGGGCTCCGGATTGCGCGCACTTCAT
AATTTACACCGTCTGCTTTTTGGACGCGCGTTTTTGGTCGTCTGCTAAACTAATATTGGTCCCGACGCATTAAAAATGCT
ACAGCGACACGCTATAACATTTATTGGACGTGAAATTTTTATGCGGGCGTTGGAGATGCTCTAAGTGAAAATAGAACGCA
CTCGCCGTTGCGCCGGAAGA--CTCCCCCACCTGCTTGCTTCTGGCAGCAAG----------------------------
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ACTCGCGACGAGCGCTGCCGCGTCAATCACTCCGCGACTGGATTTTGACGCATTTGTTTTCTCACGAGCTACACAACGTG
GCCTATTGACCGATTGACCGTTCAACTTTCTCTTGTGTAAGCTGTGAAAGTGATCGATCAATCAACCATTTTTAACACTT
ACGTTGGCA----TGACCGGGAAATGTTCCTATCGAGCCCCTAGT------TCAGCCAGCGAGGAACGTTCGCAAATCAC
AACTAGGAGTATTGTC----TTTCTTTCTTTCTTGGAAGGGGTGCA--------CCAGGAGTATCATCTTGGCCAGCAAG
CTGAGTCTGGTGTTGACCACCCAAGCAC----------ACAGGTGTGTGGAGACCTTTCTCACCGTGGTCGCCAAGCAAG
CAGAACCTGGCGATGCTATATG-------AAGCTAGCCCCGCGGCAGCAAGTCCTCATCGGCACAAGAGAGCATCTAGTC
TAGCACCAAGGAGACGGACGAACAAACGTGAAGACGAGAGAGGTTCAGTTCCTTCCATATACTACTAGCTAG--CTACTC
CGCTCATGGGAGACGGTAAGAAATCCAGCTCCGGCTTCTGGTCGACGGTGGCGTCTTGGTTAGCTTGCTTTCGCCCACCC
AAGGGCAAGGCGGCGAGCACCACCGGCGGCCGGGCCACCACGTACGATCCAGTCGGCGGGATGGTCGCGGCGGCCAAACA
TTTCTCCGCTGCTCACAAGATAAACTTTGGATGATCCATGA----CATGTCTGCTGGGTATATACGGTGATTGTACATAT
GTGTA---------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS-----------------------------------------------------------------------
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-------------------------SSSSSSSSSSS-------------S-----------------S------------
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-----------------------------------------------------------------------------S--
---------------S----------------SSS---------------------------------------------
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--------------------------------------------------S-----------------------------
------------S----------------------S------------------------------------------S-
---------SSSS-----------------------------S------------------------------------S
------S--S-S-----------------------------S-------------S------------------------
S-----------------------SSSSSSSSSSSSSS---S-S------S--------------------------S--
-------------------------S----SSSS----------------------------------------S-SS--
-------------------S-------------SS--------------------------S----SSSSSSSS------
---S-----S-------------------------------S--------------------------------------
----S-----S---S----------S-------S----------------------S-----------------------
-----------------------------------S-----SSSS---S-------------------------------
---------S------S----------------S-----------------------------S----S-----------
-----------------------------SS------------------------------------SS--S-------S
-----S-----------------S-----S----------------------------S---------------------
----------SS-----------------S--------S--------------------------S--------------
---------------SS----------------SS-------------------------------------S-------
--S--------------------------------S-----------------------S--S-------S--S---S--
----S-------------------------------S-------SS-SSS-SSSSSSSSSS-------------------
----S----S------------S----------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS
>forward_106
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------GGCGACGGGTAGAGATTGAG------------------------------------------------------
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>reverse_6336
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---------------CCTAGCCGACCCTCTTCAAC---------------------------------------------
---------
