>input_sequence_87242
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--------------------------------------------------ATGAAGTTCTTCTCGGCGTTCGACCCGTGG
CCGGTGTTCTTCCGCCGGGAGTGGGGCCGCACCTGGCCCTTCCTCGCCGGCTTCGCCGTCACGGGCGCCCTCATCACCAA
GATGACCGCCGGCTTCACCGAGGAGGACCTCAAGAACTCCAAATTCGTCCAGGCGCACAAGAACAAGTAG----------
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>chr1A_1_TraesCS1A01G035800
TAGGGGCTACATATCTGACTGCCAACCCAGTTTTCCATGCGCGTACCAAGCACATCGAGATTGATTTCCACTTTGTGCGC
GAGCGTGTTGCTTCTGGAGCTCTTGAAGTCAGGATTATTTCTTCTAACAATCAGCTGGCTGATGTGTTTACTAAACCAGC
CACCAGACAGATGCTAGACCGTTTTAGTACCAATCTAAACCTTGTACAGAGTAGAAGCTCAGATTGAGGGAGAGTGTTAA
AATAGGTCTAGCGTGTCATGTACACGTACTGTGTACGTATGTAATTTTATTTGCTGATTGTTATATATAGAAAGACGTGG
AGAGGCTTTGCCCCACGGGAAACCCTAAACTCTATTCTAAAACTCCCCCTATCCATGACCTTGTGCATATAGGAGGAGGG
CAAAGGTAAATGTACACGGGCCTTGCTAGTTTGACAGCACAATAATCAGTATTCCAGTGTCTGGCCAATGAATACTACAG
ATTTCAAAAAACGCATTTTCTTTCTCAGGCTGGCCAAGAAAAAAAAATAGGCCAAGACCTCTTTTTAAGATACTGCAAAA
ACAGTATGGTATTTGTGCTATTAAATACAAATTATAAAAGCCGTGGTGTTTTTTGATGCCAAGCACATCAAAGTTTCTAA
AACCGTGGTTTCTAACATTCATCTGCCGAACGCAGCCTCGGTTTTGTTTTTGAGCAGCCTCGGTGGTTCCCTAAAAACGC
ATCGTGTTCTTGAGAAAAAAAA-AGGCTATCTGGGCCTGAAGTTCCGGGACGCATCG--AAGCCCGAACACCAGCCCAGA
TGGCGCAGCCCACGAGAAGCCCACCCAGCCGGCCACCACGACTCACTCAACCCAACCCCA----ACCCCACAGCCACTCC
TCTTCTTTCCCCTCACC---CCCCGTCCACGCCGCAACGCAACCAGAGAGAGAGAGAGAACCAGATCTTGGCGGACACGA
ATCCAATCCAATCCAACCCAAGGCGGAGGTCGAGATCAAAGCCACCGGAGATGAAGTTCTTCTCGGCGTTCGACCCGTGG
CCGGTGTTCTTCCGCCGGGAGTGGGGCCGCACCTGGCCCTTCCTCGCCGGCTTCGCCGTCACGGGCGCCCTCATCACCAA
GATGACCGCCGGCTTCACCGAGGAGGACCTCAAGAACTCCAAATTCGTCCAGGCGCACAAGAACAAGTAGTCGCCGCCCG
CCCGGCCCGTCCGCCGCCAGGTATCCCCCCG-CCCCTCCCCTCCTTCGATCCGTCCTTGGGTGGGTAGATGC----GTGG
ATCTGCCGGCCGCTTGTTCTCGTCGTAGATCTGGGGTGGGTGGGGG-GAGGGGCGTTCGATTCGCCTTCGCACGTAGGTG
TCTCATGC-------CGGAGTCTTGATCGTTGGTCGTCAGAAGGGCTGCGGCGATTTGCGGGGAGTCGGTGGAGCCGTTT
CGGATCTGGAGGAGCATTAGGGAGACGCAGCACGAGGTGTCTGTGTTTGAGAAATGCTTCTGTGATTAATTGAGCGCTGC
ATGATCTGTGGAACGTCGGATCGCTTGAACCGATTAGGCGACGGATCTGCAGTGTGAGTTGACCCTAGTAGAGGAATGGG
CAACTGAGTGAGTTCATTCATCGATCCCCGTCCGTGGGATAAGAGGGGAAGGGGGTGCATGAAGGAGACACAGCACGATG
GTTTTCTGTTGAGAAATGCTTCTGTAATTAGTTGACCACTGTATGATCTGTGGAACATCGGATCACTTGAACCGATTAGA
CGATGGATCTGCAGTGTGGGTTGGCCCATGCAGAGGAACCGGCGTGGACGATGGATCAACCCCTGTCTGTGGGATAAGAG
CGGAAAGGGAGACACAACACGATGGTTTTGTGTTGAGAAATGGTATTGTAATTTATTGAACTCTGCGTGCTCTGTGGAAC
GTTGGATTCTTGAATCGATTAGGCGATGGTTTTATGGTGTGGTTTGGTCCAAGTAGAGGAATGGCGAGTTAGTGCATTGA
TTCTAATCTCTGGCTTTACTGGTTGTGCCACTCTGACCTCCTGGATGCCGCTGTAGTTCTGTCAAATGTGTTCTTTTGTT
CCTGAAATTAGTGTATTGGATTCCCAACGTGTGTTAACCTGCATTCTTATGGCACAAACCAAAATTATCAACCTAATTTG
CGCATCCTCTGTTATTCTTCAGAAAATAAACATACAAGAGAAT
>chr1B_651
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----------TCTAACATTCATCTGCCAAACGCAGCCTCGGTTTTGTTTTTGAGCAGCCTCAGTGGTTCCCTAAAAACGC
ATCGTGTTCTTGAGAAAAAAAAAAGTATATCTGGGCCCGAAGTTCCGGGACGCATCTCCAAGCCCGAACACCAGCCCAGA
TGGCGCAGCCCACGAGAAACCCACCCAGCCGGCCACCACGACTGACTCAACCCAACCCCAACCCACCCCACAGCCACTCC
TCTTCTTTCCCCTCACCTCCCCCCGTCCACGCCGCAACGCAACAAGAGAGAGAGAGAAT--CAGATCTTGGCGGACTCGA
ATCCAATCCAATCCAATCCAAGGCGGAGGTCGAGATCAAAGCCACCGGAGATGAAGTTCTTCTCGGCGTTCGACCCGTGG
CCGGTGTTCTTCCGCCGGGAGTGGGGCCGCACCTGGCCCTTCCTCGCCGGCTTCGCCGTCACGGGGACCCTCATCACCAA
GATGACCGCCGGCTTCACCGAGGAGGACCTCAAGAACTCCAAGTTCGTCCAGGCGCACAAGAACAAGTAGTCGCCGCCCG
CCCGGCCCGTCCGCCGCCAGGTATCCTCCCCTTCA------TCCTTCGATCCGTCCTTGGGTAGATAGATGCATCCGTGG
ATCTGCCGGCTCCTTGTTCTCGTCGTAGATCTGGGGTAGAGGGGGTAGAGGGGCGTTCGATTCGCCTTCTCGCGCACGTA
GTATATGGCTGGTGACGGAGTCTTGATCGTTGGTCGTCAGAAGGGCTGCGGCGAT-TGCGGGGAATCGGTAGAGCCGTTT
CGGATCTGGAGGAGCATGAGGGAGACGCAGCACGAGGTGTCTGTGTTTGAGAAATGCTTCTGTGATTAATTGAGCGCTGC
ATGATCCGTGGAACCTCGGATCACTTGAACCGATTAGGCAACGGATCCGCAGTGTGAGTTGACCCTAGTAGAGGAATGGG
CATCAA------------------------TCTGTGGGATGAGAGGGGAAGGGGGTGCATGAGGCGGACA----------
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--------------CAACACGATGGTTTTCTGTTGAGAAATGGTACTGTAATTTGT------------------------
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>chr1D_719
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------------------------------------------------------------------------------GC
ATCTTGTTCTTGAGAAGAAAAAAAGTCTATCTGGACCCGAAGTTCCGGAACGCAACG--AAGCCCAAACACCAGCCCGCA
TGGCGTGGCCCACGAGAAG----CCCAGCTGGACACCACGACTCACTCAACCAA------------CCCACAGCCACTCC
TCTTCTTTCCCCTCACC---CCCCGTCCACGCCGCAACGCAACC---GAGAGAGAGAAT--CAGATCTTGGTGGACTCGA
ATCCAATCCAATCCAATCCAAGGCGGAGGTCGAGATCAAACCCACCGGAGATGAAGTTCTTCTCGGCGTTCGACCCGTGG
CCGGTGTTCTTCCGCCGGGAGTGGGGCCGCACCTGGCCCTTCCTCGCCGGCTTCGCCGTCACGGGGGCCCTCATCACCAA
GATGACCGCCGGCTTCACCAAGGAGGACCTCAAGAACTCCAAGTTCGTCCAGGCGCACAAGAAGAAGTAGTCGCCGCCCG
CCCGGCCCGTCCGCCGCCAGGTATCCCCCCGGCCCCTCCCTTCCTTCGATCCGTCCTTGGGTAGGTAGATGC-------G
ATCTGTTGACTGCTTGTTCTCGCGGTAGATCTGGGGTGGGTGGG------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS-----------------S---------------------------------S------------------
-------------------------S-----------S------------------------------------------
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---------------------------------------------------------SSSS---------------S---
----------------S---------------------------------------------------------------
-----------------------------------------------------------------S--------------
------------------------------------------S-------------------------------------
----------------------------------------S---------------------S-----------------
----------S----------------------------------S-----------------------S-S--S-S--S
SSSS---S-----------------------------------------------S--------S-----S---------
-----------------S--------------------------------------------------------------
------S-------S-------S----------------S-------S--------------------------------
--S-SSSSSSSSSSSSSSSSSSSSSSSSSS--S-------S---------------------S-SS----SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS---------------S---------------S--------S-SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_37
-----------------ACTGCCAACCCAGTTTTCCA-------------------------------------------
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>reverse_1838
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-----------------------------------------------------------------------------GAG
CGGAAAGGGAGACACAA---------------------------------------------------------------
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