>input_sequence_87237
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-----------------------------------------------------------------------------ATG
GCGAGCTTACGCGTGGTGGTCACCGTGGTGTTGCTGCTCTTGTGCGCCTGCGCTCTGTTGGCGGAGTGCTCCCGGCCGTT
GCGCGATCATGGCCACGGAGGGGGCGGCTTGTCGACGGCCAACTTGCCGGTGTTTGTCGTCGCAAGGGCGGGGCCAAGCA
GGCGAGGCGCCGGTCACTAG------------------------------------------------------------
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>chr6A_1_TraesCS6A01G173500
AGAATATGTCATATCTCCTCATCCCAAGAAAGGAATAGCACGATCCGGCCGGCCGGATGGATATGC-AGATAGCTAAATC
CAGTACCGACCGCGGGCGCTTTTGGTAAAAGATTCAGCATTCAGCAGTATGAACAGACCGAATAAAACTACCCATGACAC
AGCAC----TGCTGGAAAAAAAGTGCTAACGCTCTGGCCAACCAGGATTACCGACGTTATTCGGTGCGTGCTTTGCTACC
CGGCCAAGGAACAAGACTTTTGGAC----TCACTTTGAGTAGGTTTTACTGCTACACATTCTCTC----TGCAGTGCGAA
GCAAATTCACACTCGTGAATCCAT---------CCATTATGCAATAGCAATGCAAATTTCCAGTATTATATCTCCTGCCA
GTAATCAGTTTCTTCTTCAGAAAAGTGCATACATAAACTAGTAGT-ATGAGCCTTCACCTACGTACCAGATGGAGAACCT
GAATTTCCAG------ATAGGGACTGAACTTGCACTTTGCAGTGTCAACTGTCAAGTTTTATACTGTACTAACGCGGAGT
CCATCCTTCTTAAACAAATACAAATGCATCCATTCACTACAGCTCTGA-TACTATTTTAAGAACCCCTCTCCACAAGCAA
GCACACACGCTGCCGCAGGCCGGTCAAACTGAGCGTGTAAATGCAACCCAGAAAAGCAAAGATTTGGTTCAGAATCTAGG
GGTGGTTGCAGCCTAACGAGATCAAACCTACCACCTTCCT-----TTCCTCCGTTTGTCAACCCTCATCCCTCCATGCGC
GCGCGCTCATTCAAAGTCCTTGCCGCACACGTCTCACCTCCTCCCCTCCCGTGCCCCCGTCTCGCCACCATTTAAGCGTC
CTCCTCCCTTCCTTCCTCCTCCAGGCCAACACGACCAACACCTTACGCACACAACCTCTCCTTCTGAAACCAGAGCTCTC
CCTCTTGCCGATCGACGACCGCCGACAAAGCCCTAGCCCGTAATCGACACCGCCTTCGACCGCCGCGGAGCT--AGGATG
GCGAGCTTACGCGTGGTGGTCACCGTGGTGTTGCTGCTCTTGTGCGCCTGCGCTCTGTTGGCGGAGTGCTCCCGGCCGTT
GCGCGATCATGGCCACGGAGGGGGCGGCTTGTCGACGGCCAACTTGCCGGTGTTTGTCGTCGCAAGGGCGGGGCCAAGCA
GGCGAGGCGCCGGTCACTAGTAGCCGGTTCTGTACGTAAACTTGTGAAATGTATCATATCACCGGTCTCTCTCTTTCAGT
AGTTTTTGCTGATGTTGTTCTGCGGCTGTTTCATTTGTTCTTCCCCATAGGTATAGGCTTCGGTCGGTCTCTCTCTGGAG
AAAAGATAGGTACTGCTAATTGTGAAAAATGTACTGTTAATATTCTTCTTTCATGGCTAGCAACCTAGCCCTCTTTTTCA
CACTTTTTTGGGGGGTTCGATTACATGTAAGATGGGTAGTGAACTTTCCCCTAAAAAGGTGTTATGTTATCTTTTCCTTT
GCGGGGGATGTGCAGATGGAGTTTAACAGCAATAAGATTTATTAAGAATCCCAACGGAGATTACATAATGTTTGCCCAGG
TTTATTGCTCATGATCACAGGGTAAT-------TGTTGTCGGTCCGCTAGCTGCACAAGTTACTCAGAAGACCACAAAAT
GTTTTCTGAAATATTAACAGTAAATTCTCAGGACCATCAAATTTGGAAG-------GAGTGAAAACAGAGGATAAATATC
TGATTGCACTAAACAATAAGACCATCAAATTTGGAAGGAACAATGAGTCAAAAA--------------------------
------------------ACACATATATA------CACTGAACT-TTAAGGTCACCTAGGCTAATGGCCTATCCTATGTC
ATGCAGGGAATTACTGGTCGTCTGCCGCTTTTCAGGGCTTCATTCAGAAAATAAAACAGAAGATGTCCGATAGATAGCAG
TTGGGTATCATTTACTCCGGGCCTTCGACATTTTGGAAGACAGCCATTTCCCTAGCTTTGGTCGACTGCCCTTTTCGCAG
GAGGGTTGCTCAATATTCTCCGAGTGTGTTCTCCTGTTACCCCTCAATCTAGAGTATGAGAACCAACCGCGAACAGAGCT
TCCTTTCTTACGATCTTCCTCCACGTGCTGCTCGTGGTGCTCATAAACACAAAAATCTTCATCCAGAATACTGGTCGAAT
GCCTAGTAGCAGCAAGCTTCTTCTCGCCCTCATCTTCTTCGATCA
>chr6B_1
AGAATATTTTATATCTCCTCATCCCAAGAAAGGAATAGCACGATCCGGCCGGCCAGTCGGATATGCA-GATAGCTAAATC
CAGTGCCGACCGCGGGCGCTTTTGGTGAAAGATTCAGCATTCAACAGTATGAGCAGACTGAAATAAACTACTGATGACAC
ATCACAAAGTGCCGGAAAAAAAGTGTTAACGCTCTGGCCAACCAGGATTACCGACGTTATTCGGTGCATGCTTTGCTACC
CGGCCAAGGAACAGACAGACTCTCGGGTTTCACTTTGAGTGGGTTTTACTAGTACACATTCTCC----TTGCAGTGTGAA
ACAAATTGACACCGGTGAATCCATTCTACCGCTCCACTATGCAATAGCAATGCAAATTTCCAGTACTATATCTCCTGCCA
GCAATCAGTTTCTTCTTCGGAAAAGTGTATACATAAACCATTCTAT----GCCTTCACCTACGTACCGGTTAGAGAACCT
GAATTTTCAGATAGAGATAGGGACTGAACTTGCACTTTGCAGTGTCAACTGTCAAGTTTTATACTG---TAACGCGGAGT
CCATCCTTCTTAAACAAATACAAACGTATCCATTCACTATAGCTCAGA-TACTATTTTAAGAACCCCTCTCCACAAGCAA
GCACACACGCTGCCGCAAGCCGGTCAAACTGAGCGTGTAAATGCAACCCAGGAAAGCAAAGATTTGGTTCAGAATCTAGG
GGTGGTTGCAGCCTAACGAGATCAAACCTACCACCTTCCT-----TTCCTCCGTTTGTCAACTCCCATCCCTCCATGCGC
GCGCGCTCATTCAAAGTCCTTGCCGCACACGTCTCACCTCCTCCCCTCCCGTGCTCCCATCTCGCCACCATTTAAGCGTC
CTCCTCCCTTCCT----CCTCCAGGCCAACACGATCAACACCTTACGCATACAACCTCTCCTTCTGAAACCAGAGCACCC
TCTCTTGCCGATCGACGACCGCCGACAAAGGCCTAGCCTGT-ATCGACACCACCTTCAACCGCCGCGGCGCT--AGGATG
GCGAGCTTACGCGTGGTGATCATCCTGGTGTTGCTGCTCTTGTGCGCCTGCGCTCTGTTGGCGGAGTGCTCCAGGCCGTT
GCGCGATCATGCCCACGGAGGGGGCGGCTTGTCGACGGCCAACTTGCCGGTGTTTGTCGTCGCGAGGGCGGGGCCAAGCA
GGCGAGGCGCCGGTCACTAGTAGTGGGTTCTCTATGTAAAGTTGTGAAATGTATCATATCACCGGTCTCTCTCTTTCAGT
AGTTTCTGCTGATGTTGTTCTGCGGCTGTTTCATTTGTTCTTCCCGATAGGTATAGGCTTCGGTTGGTCTCTCTCTAGAG
AAAAGATAGGTACTGCTAATTGTGAAAAATGTACTGTTAATATTCTTCTTTCATGGCTAGCAACCTAGCCCTCTTTTTCA
CACTTTTTTTGGGG-TTCAATTACATGTAAGAT-GGTAGTCAACTTTCCCCTAAAAAGGTGTTATGTTATCTTTCCCCTG
AA-------------ATAGAGTTTAACAGCAATAATATTTA---AGAATCCCAACAGAAATTACATAATATTTGGCCAGG
TTTAATGCTCATGATCACAGGGTAAT-------GGTTGTCAGTCGGCTGGCTGCACAAGTTACTCAGAAGACCGCAAAAT
GTTTTCCGAAATATTAACAGTAAATTCTTAAGACCATCAAATTTGGAAGGAACAACGAGTGGAAACAGAGGATAAATATC
TGATTGCACCAAACAATAAGACCATCAAATTTGGAAGGAACAATGAGTCAAAACACACACACACACACACACACACACAC
ACATATATATATATATATATATATATATA------CACTGAACTTTTAAGGTCACCTAGGCTAATGGCCTATCCTATGTC
ATGCAAGGAATTACTGGTCGTCTAC-----------ACTTCATTCAGAAAATAAAGCAGCAGATGTCCGATAGATAGCAG
TTGGGTATCATTTACTCCGGGCCTTCGACATTTTGGAAGACAGCCATTTCCCTAGCTTTGGTCGACTGCCCTTTTCGCAA
GAGGGTTGCTCAATATTCTCGGAGTGTGTTCTCCTGTTACCCCTCAATCTAGAATATGAGAACCAACCGCGAACAGAGAT
TCCTTTCTTACGATCTTCCTCCACGTGCTGCTCGTGGTGCTCATAAACACAAAAATCTTCATCCAGAATACTGGTTGAAT
GCCTAGTAGCGGCAAGCTTCTTCTCGGCCTCATCTTCTTCGATCA
>chr6D_5
----TATTTCATATCTCCTCATCCCAAGAAAAGAATAGCACGATCCGGCCGGCCAGATGGATATGCAAGATAGCTAAATC
CAGTACCGACCGTGGGCGCTTTTGGTGAAAGATTCAGCATTCAACAGTATGAACAGACTGAATAAAACTACTGATGACAC
AGCACAAAGTGCTGGAAAAAA-GTGTTAACGTTCTGACCAACCAGGATTACCGACGTTATTCGGTGCATGCTTTGCTACC
CAGCCAAGGAACAGACAGACTCTCGGATTTCACTTTGAGTGGGTTTTACTACTACACATTCTCTTAATTTGCAGTGTGAA
ACAAATTGACACTCGTGAATCCAT---------CCACTATGCAATAGCAATGCAAATTTCCAGTACTATATCTCCTGCCA
GTAATCAATTTCTTCTTCAGAAAAGCGCATACATAAACTATCTAGCATGAGCCTTCACCTACGTACCAGATAGAGAACCT
GAATTTCCAGATAGAGATAGGGACTGAACTTGCACTTTGCAGTGTCAACTGTCACGTTTTATACTG---TAACGCGGAGT
CCATCCTTGTTAAACAAATACAAATGTATCCGTTCACTACAGCTCTCATTACTATTTTAAGAACCCCTCTCCACAAGCAA
GCACACACGCTGCCGCAAGCCGGTCAAACTGAGCGTGTAAATGCAACCCAGAAAAGCAAAGATATGGTTCAGAATCTAGG
GGTGGTTGCAGCCTAACGAGATCAAACCTACCACCTTCCTTTCCTTTCCTCCGTTTGTCAACCCCCATCCCTCCATGCGC
GCGCGCTCATTCAAAGTCCTTGCCGCACACGTCTCACCTCCTCCCCTCCCGTGCCCCCGTCTCGCCACCATTTAAGCGTC
CTCCTCCCTTCCT----CCTCCAGGCCAACACGACCAACACCTTACGCACACAACCTCTCCTTCTGAAACCAGAGCACTC
TCTCTTGCTGATCGACCACCGCCGACAAAGGCCTAGCCCGT-ATCAACACCGCCTTCGACCGCCGCGGCGCTAGAGGATG
GCGAGCTTACGTGTGGTGATCACCGTGGTGTTGCTGCTCTTGTGCGCCTGCGCTCTGTTGGCGGAGTGCTCCAGGCCGTT
GCGCGATCATGCCCACGGAGGGGGCGGCTTGTCCACGGCGAACTTGCCGGTGTTTGTCGTCGCGAGGGCGGGGCCAAGCA
GGCGAGGCGCGGGTCACTAGTAGCGGGTTCTCTATGTAAAGTTGTGAAGTGTATCATATCACCGGTCTCTCTCTTTCAGT
AGTTTTTGCTGATGTTGTGCTCCGGCTGTTCCATTTGTTCTTCCCGATAGGTATAGGCTTCGGCCGGTCTCTCTCTAGAG
AAAAGATAGGTACTGCTAATTGTGAAAAATGTACTGTTAATATTCTTCTTTCATGGCTAGCAACCTAGCCCTCTTTTTCA
CATTTTTTTTGGGGGTTCGATTACATGTAAGATGGTAA-TGAACTTTCCCCTAAAAAGGTGTTATGTTATCTTTTCGTTT
GT-GGGGATGTGCAGATGGAGTTTAACAGCAACAAGATTTA---AGAATCC------------CATAATGTTTGGCCAGG
TTTAATGCTCATGATCACGGAGGACAAATGAAAGGTTGTCGGTCGGCTGGCTGCACAAGTTACTCAGAAGACCACAAAAT
GTTTTCTGAAATATCAACAATAAATTCTTAAGATCATCAACTTTGGAAG-------GAGTTAACACAGAGGATAAATATC
TGATTGCACTAAACAATAAGACCATCAAATTTGTAAGGAACATTGAGTAAAAAA--------------------------
------------------ATATATATATATATATACACTGAACT-TTAAGGTCACCTAGGCTAATGGCCTATCCTATGTC
ATGCAGGGAATTACTGGTCGTCTGCCGCTTTTCAGGACTTCATTCAGAAAATAAAGCAGCAGATGTCCGATAGATAGCTG
TTGGGTATCATTTACTCCGGGCCTTCGACATTTTGGAAGACAGCCATTTCCCTAGCTTTGGTCGACTGCCCTTTTCGCAA
GAGGGTTGCTCAATATTCTCGGAGTGTGTTCTCCTGTTACCCCTCAATCTAGAGTATGAGAACCAACCGCGAACATAGCT
TCCTTTCTTACGATCTTCCTCCACGTGCTGCTCGTGGTGCTCATAAACACAAAAATCTTCATCCAGAATACTGGTCGAAT
GCCTAGTAGCGGCAAGCTTCTTCTCGCCCTCATCTTCTTCAATCA
>SNPs
-------S----------------------------------------------S-------------------------
--------------------------S----------------S--------------S------------SS-------
-------------------------S-----------------------------------------S------------
-------------SSSSSSS-SSSS---------------S---------S-------------S-----------S---
S------S----------------------------S----------------------------S--------------
----------------------------------------S-SSS--------------------------S--------
------------------------------------------------------------------SSS-----------
--------------------------S-----------------------------------------------------
-----------------S--------------------------------------------------------------
----------------------------------------------------------------S---------------
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-------------SSSS-----------------------------------------------------------S---
S-----------------------------S----------S--------------------------S-----------
------------------S-----------------------------------------------------S-------
-----------S---------------------------------------------------S----------------
------------------------S------S--S-----S---------------------------------------
---------------------------------------------S------------------------------S---
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---------S----------------------------------------------------------------------
-SS--------------------------------------SSS-----------S--S---------------S-----
----S----------------------------S----------S---S-------------------------------
----------------------------S-S-------------------------------------------------
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-------------------S-S----------------------------------------------------------
------------------------------------S------------------S---S--------------------
-------------------------------------------------------------------------------S
--------------------S-----------------------------------------------------------
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----------S----------------------------------
>forward_897
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-----------------------------------------------------------------------------GTC
CTCCTCCCTTCCTTCCT---------------------------------------------------------------
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>reverse_2251
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----------AGCAAGCTTCTTCTCGCCC----------------
