>input_sequence_87232
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-----------ATGGCGAAGATCAAGCCGAGAGCACTGCTGGCACAGAGCAAGCAGAAGAAGAGCCCTACTAAAATCGGC
CCAACAATGTTTGCCTTCATCGTCGTTGGTGCCCTAGTGGTGTCCTCACTCTACGCATACAGGTACTGGATGAGCAAAGG
ACCAGCTGGAGCAGAAAGTGTTGCTGGGAACTAA----------------------------------------------
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>chr3B_1_TraesCS3B01G204300
AGCCGTCGGGTGATTAATTTCGGTTGTGGGTGTCGCCGGAGGAACCGTGGATCTTGAGCGAATCGTTTCGAGATCGAGCC
CCCCTTGATCTGCCCTTGGTAGATCCCCGCTTTTCCGTTCAGAGCGCAGTGGCTTCGCTTATGTGGATTGCTCAGTGTTG
TACC---GTTGCTATAGATAGCCTAGTTCTTCAGACAACGAAGCTGGGAACAAGGATAGATGCACCCCTCAATCTGCGCC
AGTATTTTTACGATCTGCGTCCCTCGAGTGCAACAGCCATAACCTCCATTTGGTCATGTTGTAATGAA----CTCACATG
GCCCTTGATTTGCATTAT-TAATT--------------------------TAATTTCAAGCCGCAGATGGCACCTGCGAT
GGATAGATCTTAGAACATCATTTCCTGCAGTACTGTAGTTC---------------------------------------
-----------------------ATCGTTCCATGTATCTTATGTCACTCAC----TCACTAGGCATGCCTCTTTTGTGAG
GTCCCTACATAATAACCAGTGGACTGGATTCATGAGTTAACATGATGAATCGTTTAA------------------ACAGT
GTATCTATCTACTAGCATGAATTATGATTTTCGCTTCTTCAATTATCTCTGAAGGTTGGTAGTACATTGCTTTG-ACACA
TGCAAGATGCAATATCGCCGTAATTAGATGTTTATTTCTACATCCCACCGAGGGCATTTATTACTG--------------
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--------------------------------------------------------------------------TGATCT
TACAAATCAGGCTGTTCATAAGCATATAAAACCATGTACAATG-CAAGGTTCTTAGAGAAGTACTTTGTAAAAATAAACA
GATTTTTGCTTAAGCATTGTTGCTTGTTTCTATAACAG-GGTGCCAAGCACCGGTGCTTCAGAAAAAACCTGTTCG--TT
TTACAAGCACCTCTCTAGGCACCTTGCATTGTACGTGACCTACTGCAGTTAATCAGTTAATGGTCTTCTTGTGGTATGCA
ATGGTTCAGAAAGAAAAAAAACATAGCAGTTCCTTACACAACTTCCTTATGCTGATTCCAGTCATTCTCTTGGCATTGTC
AGAAGTGAGCCATGGCGAAGATCAAGCCGAGAGCACTGCTGGCACAGAGCAAGCAGAAGAAGAGCCCTACTAAAATCGGC
CCAACAATGTTTGCCTTCATCGTCGTTGGTGCCCTAGTGGTGTCCTCACTCTACGCATACAGGTACTGGATGAGCAAAGG
ACCAGCTGGAGCAGAAAGTGTTGCTGGGAACTAAGCCCGAGCAAGTGTGGAATGATTGATTTTTGTTGTTGTATGTATCA
TCTTGTTGGCTAATTTCTGTTGTTGTACTCCAGTAAATGGTACGTAGACAGATTTATTTATTTTGCCATGTTTAGTTCCT
CTTACCCACCTGGTAC----------------------------------------------------------------
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-------------------------------ATTGTATTAATACTTGTTT------------------------------
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---------------------------------TGTTACACTCTTTTCTTTGACTTGATATTTTTCTCGCCTGGGATGAT
ATTGCTGGAAGGATTGGTATCGATGGCAGC-TGTTGTTGCTTTAACTGTTTTTATGGTTTATTAGGCCTTGTACAATGGG
AGATGCTTGGGGAGGTGCTTAGAAAAATAAATCGAGTTTTTCTGAAGCACCGGTGCCTATTTCTACAGGAGAGACGCTTA
GTTAAGCGTCTATCCTGTACAAATAAGCACGGGTGCTTAAGAAAAGTCTGGTTTATTTCTCTAAGCACCTCTCCTAAGCA
TCTTGCATTGTACAAGGCCTTACTGGCTTGGAACTAACCACTGTTGCTGCTCAAGCAAAGCAAAAGTTGGTTATGAGTTG
CTTCATGATTCTGCATCTGCTAATTATTCTGCTTGCGATGCTCATTTAGTCATTAT---TAGTAGGATTCTCAACCATGT
CGCTGTTGAACAGAAAAGGCAAATAACATGAAAGTACACACATAATGGATGCATGGTACCCCCGCTGCAAGGTGGGTTCG
GTCGGTTGTTGCGCTGTTCCCATCAGAATTCAGATCAGCAGATGAATGTCTCCTTCTGTGCTCTGTTGCATCATCTTATT
GGGACCTTTTCAATCGCTATAGCAGCCAGCAGATGAATATCGAAACGTTCATGACAGTTCTTGTTGCCTTTAAAAATCAT
GTAGTATTACTGACTGAGCTGAAATCTACCTGAAGTTTCGAAGAAA---AAATAAGAGGGGAAAAGTAAGCATTCCTTCG
TTATCCTTTTGTATCATGTAGCTTCGCTATTGTCCACG--------CGTATCCGTGGAAACAACACGCGTTGATGAGATG
AGACGTG
>chr3D_9
--------GGTGATTAATTTCGGTTGTGGGTGTCGCCGGAGGAACCGTGGATCTCGAACGGATTGTTTCGAGATCACGCC
TCCCTTCATCTGTCCTTGGTAGAT-CCCGCTTTTCCGTTCAGGGCGCAGTGGCTTCGCTTGTGTGGATCGCTCAGTGTTG
TA---CTGTTGCTGTAGATGGCCTAGTTCTTCAGACAACGAAGCTCGAAATAA--ACAGATGAACTCGTCAATATGCGCC
AGTATAGTACGGAGTAC----------------------TAGCTTCCATTTGGGCATGTCGTAATGAAGCAACTTCCATG
ACCCTTGATCTCATTATTATAATT--------------------------TAATTTCAAGCAGCAGATGGCACCTGCAAT
CGATCGATCTGAAAACATCATTTCCTGCAGTAGT-TAGTTC---------------------------------------
-----------------------ATCGTTTCATTTAGGGATTCATCTATGTTATGTCACTGTGCATGCCTCTTTTATGTG
GTCCCTATGTTACAACCATTGGATTGGATTCACAAGTTATCAGTCGTTTCAAGAGTCTTCTATTTAGAACCATTTACAGT
GTATCTATCTACTAGCATGAATTGTGTATTCTGCTTCTTCAGTTATCGTTGAAGATTGGCAGTACATTGCTTTTCACACA
TGGAAGATGGGATATCGCCATAATTAGATGCTCATTTCTACAACCCGATGAGCAGGGGCGGAGCTACGTGAGGTGCTCCG
GCCCGCCCAGCGCGGCAGGAGTTTCTTCATTGCACACTTAGTTTGTGCTATGGAACGGCAATCAAAGAGTAATCTCTATA
GATTAGCCAGCCCGGCCAGCCCAACCTTTTGCTTCAAGCTCCGCCACTGCCGATGAGTGCATTTTGTTACTGATTGGTCT
TATAAATCTGGCCGTTCATAAGCTTATAA---------------------------------------------------
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-------------------------------------------TGCAGTTAATCAGTTAATGGTCTTCTTGTGGTTTATT
ATGGTTCAGAA----AAAAAACATAGCTGTTCTTTACACAACTTCCTTATGCTGACTCCAGTCCTTCTCTTGGCACTGTC
AGAAGTGAGCCATGGCGAAGATCAAGCCGAGAGCACTGCTGGCACAGAGCAAGCAGAAGAGGAGCCCTACTAAAATCGCC
CCAACAATGTTTGCCTTCATCGTCGTCGGTGCCCTAGTGGTGTCCTCACTCTACGCATACAAGTACTGGATGAGCAAAGG
ACCAGCTGGAGCGGAAAGTGTTGCTGGGAACTAAGCCCGAGCAAATGTGGAATGATTAATTCTT-TTGTTGTATGTATCA
TCTTGTTGGCTAATTTCAGTTGTTGTACTCCATTAAATGGAACATAGACAGATTC-----TTTTGCCATGTTTAGTTCTT
CTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATTA--ATACTTGCTATGTCACATTCTTTC--------------
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-------------------------------------------------TTGACTTGATATTTTTCTCTTCTGGGATGAA
CTTGCTGGAATGATTGATATCCATGGCAGT-TGTGGTTG-TTTAACTGTTTTTATGGTTTACTGGCTTGGAAG-------
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---------------------------TTGGAACTGATCAATGTTGCTGCTCAAGCAAAGCAAAAGTTGATTATGAATTG
CTTCAAGATTCTGCATCTGCTAATTATTCTGCTTGCAATGCTCATTTAGTCATTAT---TAGTAGTATTCTCAACCATGT
CGCTGTTGAACAGAAAAGGCAAATCACATGAAAGTACACACATAATGGATGCATGGTACCCCCGCTGCAAGGTGGGTTCG
GTCGGTTGTTGCGCCGTTCCCATCAGAATTCAGATCAGCAGATGAATGTCTCCTTCTCTGCTCTGTCGCACCATCTTATT
GGGACCTTTTCAATCGCTATTGCAGTCGA-----GAATGTCGAAACGTTCATGACAGTTCTTGTTGCCTTTAAAAATCTA
CTCGTATTACTGACCGGACTGAAATTTACCTGAAGTTTTGAAGAAA---AAATAAGAGGGGAAAACTAACCATTGCTTCG
TTATCCTTTTGTATCATCTATAGTTTCGCCGTGTCCACACGTTACACGTGTTGGTGAAAACAACACGCGTTGATGAGATG
AGACTTG
>chr3A_10
---------GTGATTGATTTCGGTTGTGGGTGTGGCCGGAGGAACCGTGGATCTTGAGCGGGTTGTTTCGAGATCACGCC
CCCCTTGATCTGTCCTTGGTAGATCCCCGCTTTTCCGTTCAGGGCGCAGTGGCTTCGCTTGTGTGGATCCCTCAGTGTTG
TACTACTGTTGCTATACATAGCCTAGTTCTTCAGACAACGAAGCTGGGAACAAGGATAGATGCACCCCTCCATCTGCGCC
AGAG-TTTTACGATCTGTGTCCCTCGAGTGCAACAGCCATAGCCTCCATTTGGTCATGTTGTAATGAA----CTTACATG
GCCCTTGATTTGCATTACTCATCGCAGGTGCAATCTGCGGCTTGAAATTATAATTTCAAGCCGCAGATTGCACCTGCGAT
GGGTCGATCTTAGAACATCATTTCCTGCAGTACTGTAGTTCGTCGTCCCATGTATCTTATGTCAGTCGATCTTAGAACAT
CATTTCCTACAGTACTGCAGGTCATCGTTCCATGTATCTTATGTCAC--------TCACTGGGCATGCCTCTTTTATGAG
GTCCCCACATAATAACCTTTGGACTGGATTCATGAGTTAACATGATGAATCATTTAA------------------ACAGT
GTATCTATCTACTAGCATGAATTATGATTTTCGCTTCTTCAATTATCTCTGAAGTTTGGTAGTGCATTATTTTG-ACACA
TGGAAGATGCAATATCGCTGTA-TTAGGTGTTTATTTCCACGTCCCGATGAGTGCAGTTATTACTG--------------
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--------------------------------------------------------------------------TGATCC
TACAAATCAGGCTGTTCATAAGCATATAAAACCATGTACTAGTTCAAGGTGCTTAGAGAAGTACTTCGTAAAAATAAACA
GATTGTCGCTTAAACC--GTTGCTTGTTTTTTTAACAGAGGTGCCAAGCACCGGTGCTTAAGAAAACAACATGTTCATTT
TTACAAGCACCTCTCTAGGCCCCTTGCATTATACATGTCCTAATGCAGTTGATCAGTTAATGGTATTCTTGTGGATTATA
ATGGTTCAGAAAA--------------------------AACTTCCTTATGCTGATACCAGTCTTTTTCTTGGCATTGCC
AGAAGTGAGCCATGGCGAAGATCAAGCCGAGAGCACTGCTGGCACAGAGCAAGCAGAAGAAGAGCCCTACTAAAATCGGC
CCAACAATGTTTGCCTTTATCGTCGTCGGTGCCCTAGTGGTGTCCTCACTCTACGCATACAAGTACTGGATGAGCAATGG
ACCAGCTGGAGCAGAAAGTGTTGCTGGGAACTAAGCCCGAGCAAGTGTGGAATGATTGAGTTTTGTTGTTGTATGTATCA
TCTTGTTGGCTAATTTCCGTTGTTGTACTCCAGTAAATGGAACGTAGACAGATT------TTTTGCCATGTTTAGTTCTT
---ACCCCCATGGTAC----------------------------------------------------------------
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-------------------------------ATTGTATTAATATACTTGCTATGTCACATTCTTTTCATTATTGCTATGT
CACATTCTTTTGGTGGCGCTTTACAAATTTATTTATTTTTCATTATTGCTCCGATTTTGAGCTTTCTTGGAACTTAAGAC
CTTTTTTTTTTGAATTTTCTGGAACTTAAGACCTTGTTACGCTTTTTAATAATATGGTTGCATGCATCGATTGATGCAGA
GGCCAGAGGTAATCCTCCTTTTCCAAAAAAAAATGTCACATTCTTTTCTTTGACTTGATATTTTTCTCTTC-GGGATGAT
ATTGCTGGAATGATTGATATCCGTGGCAGTTTGTGGTTG-TTTAACAGTTGTTATGGTTTACTGGCTTGGAA--------
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---------------------------------CTCACCACTGTTGCTCCTCAAGCAAAGCAAAAGTTGCTTATGAGTTG
CTTCATGATTCTGCATCTGCTAATTATTCTGCTTGCAATGCTCATTTAGTCATTATTAGTAGTAGTATTCTCAACCATGT
CGCTGTTGAACAGAAAAGGCAAATCACATGAAAGTACACACATAATGGACGCATGGTACCCCCGCTGCAAGGTGGGTTCG
GTCGGTTGTTGCGCCGTTCCCATCAGAATTCAGATCAGCAGATGTATGTCTCCTTCTCTGCTCTGTCGCACCATCTTATT
GGGGCATTTTCAATCGCTATAGCAGCCGA-----GAATATCGAAATGCTCATGACAGTTCTTGTTGGCATTAAAAATCTA
CTCGTATTACTGACTGAACTGAAATCTACCTGAAGTTTCGAAGAAGAAGAAATAAGAGGGGAAAACTAACCATTGCTTCG
TTATCCTTTTGTATCATCTATAGTTTGGCCATGTCCACACGTTACACGTGTTCGTGAAAACAACACGCGTTGATGAGACG
AGACTTG
>SNPs
SSSSSSSS----------------------------------------------------S--S-----------SS---
------------S-----------------------------S-----------------S-------S-----------
---S----------------------------------------------------------------------------
-----------------S-----------------------S--------------------------------S-----
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----S---------------------------------------------------------------------------
-----------------------------------------------SSSS---------S--------------S----
------------------S--------------------------------S----------------------------
------------------------------------------------------S-------------------------
--S-------------------------------------------SSS---S---S-----------------------
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---------------------------------------S-SS-------S---------------S-------------
----S-S------S-SSS-----------S-S---------------------------S------S-S-SSS-SS----
--------------------S---------S---S--S----S--------------------------------S-SS-
------------SSS------------S----S------------------------------S----------------
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--------------------------S----------------------------------S------------------
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-----------------S----------------------S-------------SSSSSS------------------S-
-------S-S----------------------------------------------------------------------
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-------------------------------------------SSSS-SS------------------------------
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------------------------------------S---S---------------------------SS----------
----------S-----S----S-------S----S----S---------------------S-S-SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS--------S---------------------------------S----------
------------------------------------S----------------------------S--------------
------------------------S-------------------------------------------------------
--------------S------------------------------------------S--------S---S---------
---------------------------SSSSSSS--------------------------------------------SS
S-S--------------S-----------------------------------------------S---S----S-----
-----------------S--SSS-SS-SSSSSSS-SSS-----------S-S----S-----------------------
----S--
>forward_405
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-----------------------------------------------------------------GATGGCACCTGCGAT
GGATA---------------------------------------------------------------------------
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>reverse_2313
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------------------------------------------------------------------------ACAATGGG
AGATGCTTGGGG--------------------------------------------------------------------
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