>input_sequence_87231
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-----------------------------ATGGCGAAGATCAAGCCGAGAGCACTGCTGGCACAGAGCAAGCAGAAGAAG
AGCCCTACTAAAATCGGCCCAACAATGTTTGCCTTTATCGTCGTCGGTGCCCTAGTGGTGTCCTCACTCTACGCATACAA
GTACTGGATGAGCAATGGACCAGCTGGAGCAGAAAGTGTTGCTGGGAACTAA----------------------------
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>chr3A_1_TraesCS3A01G173500
TTGTTTCGAGATCACGCCCCCCTTGATCTGTCCTTGGTAGATCCCCGCTTTTCCGTTCAGGGCGCAGTGGCTTCGCTTGT
GTGGATCCCTCAGTGTTGTACTACTGTTGCTATACATAGCCTAGTTCTTCAGACAACGAAGCTGGGAACAAGGATAGATG
CACCCCTCCATCTGCGCCAGAG-TTTTACGATCTGTGTCCCTCGAGTGCAACAGCCATAGCCTCCATTTGGTCATGTTGT
AATGAA----CTTACATGGCCCTTGATTTGCATTACTCATCGCAGGTGCAATCTGCGGCTTGAAATTATAATTTCAAGCC
GCAGATTGCACCTGCGATGGGTCGATCTTAGAACATCATTTCCTGCAGTACTGTAGTTCGTCGTCCCATGTATCTTATGT
CAGTCGATCTTAGAACATCATTTCCTACAGTACTGCAGGTCATCGTTCCATGTATCTTATGTCAC--------TCACTGG
GCATGCCTCTTTTATGAGGTCCCCACATAATAACCTTTGGACTGGATTCATGAGTTAACATGATGAATCATTTAA-----
-------------ACAGTGTATCTATCTACTAGCATGAATTATGATTTTCGCTTCTTCAATTATCTCTGAAGTTTGGTAG
TGCATTATTTTG-ACACATGGAAGATGCAATATCGCTGTA-TTAGGTGTTTATTTCCACGTCCCGATGAGTGCAGTTATT
ACTG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TGATCCTACAAATCAGGCTGTTCATAAGCATATAAAACCATGTACTAGTTCAAGGTGCTTAGAGAAGT
ACTTCGTAAAAATAAACAGATTGTCGCTTAAACC--GTTGCTTGTTTTTTTAACAGAGGTGCCAAGCACCGGTGCTTAAG
AAAACAACATGTTCATTTTTACAAGCACCTCTCTAGGCCCCTTGCATTATACATGTCCTAATGCAGTTGATCAGTTAATG
GTATTCTTGTGGATTATAATGGTTCAGAAAA--------------------------AACTTCCTTATGCTGATACCAGT
CTTTTTCTTGGCATTGCCAGAAGTGAGCCATGGCGAAGATCAAGCCGAGAGCACTGCTGGCACAGAGCAAGCAGAAGAAG
AGCCCTACTAAAATCGGCCCAACAATGTTTGCCTTTATCGTCGTCGGTGCCCTAGTGGTGTCCTCACTCTACGCATACAA
GTACTGGATGAGCAATGGACCAGCTGGAGCAGAAAGTGTTGCTGGGAACTAAGCCCGAGCAAGTGTGGAATGATTGAGTT
TTGTTGTTGTATGTATCATCTTGTTGGCTAATTTCCGTTGTTGTACTCCAGTAAATGGAACGTAGACAGATT------TT
TTGCCATGTTTAGTTCTT---ACCCCCATGGTAC----------------------------------------------
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-------------------------------------------------ATTGTATTAATATACTTGCTATGTCACATTC
TTTTCATTATTGCTATGTCACATTCTTTTGGTGGCGCTTTACAAATTTATTTATTTTTCATTATTGCTCCGATTTTGAGC
TTTCTTGGAACTTAAGACCTTTTTTTTTTGAATTTTCTGGAACTTAAGACCTTGTTACGCTTTTTAATAATATGGTTGCA
TGCATCGATTGATGCAGAGGCCAGAGGTAATCCTCCTTTTCCAAAAAAAAATGTCACATTCTTTTCTTTGACTTGATATT
TTTCTCTTC-GGGATGATATTGCTGGAATGATTGATATCCGTGGCAGTTTGTGGTTG-TTTAACAGTTGTTATGGTTTAC
TGGCTTGGAA----------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------CTCACCACTGTTGCTCCTCAAGCAAAGCA
AAAGTTGCTTATGAGTTGCTTCATGATTCTGCATCTGCTAATTATTCTGCTTGCAATGCTCATTTAGTCATTATTAGTAG
TAGTATTCTCAACCATGTCGCTGTTGAACAGAAAAGGCAAATCACATGAAAGTACACACATAATGGACGCATGGTACCCC
CGCTGCAAGGTGGGTTCGGTCGGTTGTTGCGCCGTTCCCATCAGAATTCAGATCAGCAGATGTATGTCTCCTTCTCTGCT
CTGTCGCACCATCTTATTGGGGCATTTTCAATCGCTATAGCAGCCGA-----GAATATCGAAATGCTCATGACAGTTCTT
GTTGGCATTAAAAATCTACTCGTATTACTGACTGAACTGAAATCTACCTGAAGTTTCGAAGAAGAAGAAATAAGAGGGGA
AAACTAACCATTGCTTCGTTATCCTTTTGTATCATCTATAGTTTGGCCATGTCCACACGTTACACGTGTTCGTGAAAACA
ACAC
>chr3D_1
TTGTTTCGAGATCACGCCTCCCTTCATCTGTCCTTGGTAGAT-CCCGCTTTTCCGTTCAGGGCGCAGTGGCTTCGCTTGT
GTGGATCGCTCAGTGTTGTA---CTGTTGCTGTAGATGGCCTAGTTCTTCAGACAACGAAGCTCGAAATAA--ACAGATG
AACTCGTCAATATGCGCCAGTATAGTACGGAGTAC----------------------TAGCTTCCATTTGGGCATGTCGT
AATGAAGCAACTTCCATGACCCTTGATCTCATTATTATAATT--------------------------TAATTTCAAGCA
GCAGATGGCACCTGCAATCGATCGATCTGAAAACATCATTTCCTGCAGTAGT-TAGTTC---------------------
-----------------------------------------ATCGTTTCATTTAGGGATTCATCTATGTTATGTCACTGT
GCATGCCTCTTTTATGTGGTCCCTATGTTACAACCATTGGATTGGATTCACAAGTTATCAGTCGTTTCAAGAGTCTTCTA
TTTAGAACCATTTACAGTGTATCTATCTACTAGCATGAATTGTGTATTCTGCTTCTTCAGTTATCGTTGAAGATTGGCAG
TACATTGCTTTTCACACATGGAAGATGGGATATCGCCATAATTAGATGCTCATTTCTACAACCCGATGAGCAGGGGCGGA
GCTACGTGAGGTGCTCCGGCCCGCCCAGCGCGGCAGGAGTTTCTTCATTGCACACTTAGTTTGTGCTATGGAACGGCAAT
CAAAGAGTAATCTCTATAGATTAGCCAGCCCGGCCAGCCCAACCTTTTGCTTCAAGCTCCGCCACTGCCGATGAGTGCAT
TTTGTTACTGATTGGTCTTATAAATCTGGCCGTTCATAAGCTTATAA---------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------TGCAGTTAATCAGTTAATG
GTCTTCTTGTGGTTTATTATGGTTCAGAA----AAAAAACATAGCTGTTCTTTACACAACTTCCTTATGCTGACTCCAGT
CCTTCTCTTGGCACTGTCAGAAGTGAGCCATGGCGAAGATCAAGCCGAGAGCACTGCTGGCACAGAGCAAGCAGAAGAGG
AGCCCTACTAAAATCGCCCCAACAATGTTTGCCTTCATCGTCGTCGGTGCCCTAGTGGTGTCCTCACTCTACGCATACAA
GTACTGGATGAGCAAAGGACCAGCTGGAGCGGAAAGTGTTGCTGGGAACTAAGCCCGAGCAAATGTGGAATGATTAATTC
TT-TTGTTGTATGTATCATCTTGTTGGCTAATTTCAGTTGTTGTACTCCATTAAATGGAACATAGACAGATTC-----TT
TTGCCATGTTTAGTTCTTCTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGTATTA--ATACTTGCTATGTCACATTC
TTTC----------------------------------------------------------------------------
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-------------------------------------------------------------------TTGACTTGATATT
TTTCTCTTCTGGGATGAACTTGCTGGAATGATTGATATCCATGGCAGT-TGTGGTTG-TTTAACTGTTTTTATGGTTTAC
TGGCTTGGAAG---------------------------------------------------------------------
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---------------------------------------------TTGGAACTGATCAATGTTGCTGCTCAAGCAAAGCA
AAAGTTGATTATGAATTGCTTCAAGATTCTGCATCTGCTAATTATTCTGCTTGCAATGCTCATTTAGTCATTAT---TAG
TAGTATTCTCAACCATGTCGCTGTTGAACAGAAAAGGCAAATCACATGAAAGTACACACATAATGGATGCATGGTACCCC
CGCTGCAAGGTGGGTTCGGTCGGTTGTTGCGCCGTTCCCATCAGAATTCAGATCAGCAGATGAATGTCTCCTTCTCTGCT
CTGTCGCACCATCTTATTGGGACCTTTTCAATCGCTATTGCAGTCGA-----GAATGTCGAAACGTTCATGACAGTTCTT
GTTGCCTTTAAAAATCTACTCGTATTACTGACCGGACTGAAATTTACCTGAAGTTTTGAAGAAA---AAATAAGAGGGGA
AAACTAACCATTGCTTCGTTATCCTTTTGTATCATCTATAGTTTCGCCGTGTCCACACGTTACACGTGTTGGTGAAAACA
ACAC
>chr3B_3
--GTTTCGAGATCGAGCCCCCCTTGATCTGCCCTTGGTAGATCCCCGCTTTTCCGTTCAGAGCGCAGTGGCTTCGCTTAT
GTGGATTGCTCAGTGTTGTACC---GTTGCTATAGATAGCCTAGTTCTTCAGACAACGAAGCTGGGAACAAGGATAGATG
CACCCCTCAATCTGCGCCAGTATTTTTACGATCTGCGTCCCTCGAGTGCAACAGCCATAACCTCCATTTGGTCATGTTGT
AATGAA----CTCACATGGCCCTTGATTTGCATTAT-TAATT--------------------------TAATTTCAAGCC
GCAGATGGCACCTGCGATGGATAGATCTTAGAACATCATTTCCTGCAGTACTGTAGTTC---------------------
-----------------------------------------ATCGTTCCATGTATCTTATGTCACTCAC----TCACTAG
GCATGCCTCTTTTGTGAGGTCCCTACATAATAACCAGTGGACTGGATTCATGAGTTAACATGATGAATCGTTTAA-----
-------------ACAGTGTATCTATCTACTAGCATGAATTATGATTTTCGCTTCTTCAATTATCTCTGAAGGTTGGTAG
TACATTGCTTTG-ACACATGCAAGATGCAATATCGCCGTAATTAGATGTTTATTTCTACATCCCACCGAGGGCATTTATT
ACTG----------------------------------------------------------------------------
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------------TGATCTTACAAATCAGGCTGTTCATAAGCATATAAAACCATGTACAATG-CAAGGTTCTTAGAGAAGT
ACTTTGTAAAAATAAACAGATTTTTGCTTAAGCATTGTTGCTTGTTTCTATAACAG-GGTGCCAAGCACCGGTGCTTCAG
AAAAAACCTGTTCG--TTTTACAAGCACCTCTCTAGGCACCTTGCATTGTACGTGACCTACTGCAGTTAATCAGTTAATG
GTCTTCTTGTGGTATGCAATGGTTCAGAAAGAAAAAAAACATAGCAGTTCCTTACACAACTTCCTTATGCTGATTCCAGT
CATTCTCTTGGCATTGTCAGAAGTGAGCCATGGCGAAGATCAAGCCGAGAGCACTGCTGGCACAGAGCAAGCAGAAGAAG
AGCCCTACTAAAATCGGCCCAACAATGTTTGCCTTCATCGTCGTTGGTGCCCTAGTGGTGTCCTCACTCTACGCATACAG
GTACTGGATGAGCAAAGGACCAGCTGGAGCAGAAAGTGTTGCTGGGAACTAAGCCCGAGCAAGTGTGGAATGATTGATTT
TTGTTGTTGTATGTATCATCTTGTTGGCTAATTTCTGTTGTTGTACTCCAGTAAATGGTACGTAGACAGATTTATTTATT
TTGCCATGTTTAGTTCCTCTTACCCACCTGGTAC----------------------------------------------
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-------------------------------------------------ATTGTATTAATACTTGTTT------------
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---------------------------------------------------TGTTACACTCTTTTCTTTGACTTGATATT
TTTCTCGCCTGGGATGATATTGCTGGAAGGATTGGTATCGATGGCAGC-TGTTGTTGCTTTAACTGTTTTTATGGTTTAT
TAGGCCTTGTACAATGGGAGATGCTTGGGGAGGTGCTTAGAAAAATAAATCGAGTTTTTCTGAAGCACCGGTGCCTATTT
CTACAGGAGAGACGCTTAGTTAAGCGTCTATCCTGTACAAATAAGCACGGGTGCTTAAGAAAAGTCTGGTTTATTTCTCT
AAGCACCTCTCCTAAGCATCTTGCATTGTACAAGGCCTTACTGGCTTGGAACTAACCACTGTTGCTGCTCAAGCAAAGCA
AAAGTTGGTTATGAGTTGCTTCATGATTCTGCATCTGCTAATTATTCTGCTTGCGATGCTCATTTAGTCATTAT---TAG
TAGGATTCTCAACCATGTCGCTGTTGAACAGAAAAGGCAAATAACATGAAAGTACACACATAATGGATGCATGGTACCCC
CGCTGCAAGGTGGGTTCGGTCGGTTGTTGCGCTGTTCCCATCAGAATTCAGATCAGCAGATGAATGTCTCCTTCTGTGCT
CTGTTGCATCATCTTATTGGGACCTTTTCAATCGCTATAGCAGCCAGCAGATGAATATCGAAACGTTCATGACAGTTCTT
GTTGCCTTTAAAAATCATGTAGTATTACTGACTGAGCTGAAATCTACCTGAAGTTTCGAAGAAA---AAATAAGAGGGGA
AAAGTAAGCATTCCTTCGTTATCCTTTTGTATCATGTAGCTTCGCTAT-TGTCCACGCGT--------------------
----
>SNPs
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-------S-------------SS-----------S---------------------------------------------
--------S-----------SS-------------S--------------------------------------------
-----------------------------------SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------
------S-------------S--------------------------------------SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------
-----------------------S-----------S--------------------------------------------
------------------------------------------------------------------------S-------
-S----SS----------------------------S--------S----------S--S----------S---------
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-----------------S---------------------------------------S-SSS------S-----------
----S-----------------S-S------S-S-------------S-S------S--------------------S--
----S-S-SSS-SSSS----------------------S---------S---S--S----S-------S-----------
--S---------S-----------------S-------------------------------------------S-----
-S--S-----------S---------------------------------------------------------------
-----------------------------------S--------------------------------------------
---------------S-------------------------------------------------------------S--
-----------------------------------S--------------------------------------------
-------------------------S-S----------------------------------------------------
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---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S---S---------------------
----------------------------------------S-------S---------------S---S-----------
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-----------------------------------------------------S------------S-------------
-------S------------------------------------------------------------------SSS---
-------------------------------------------------------------------S------------
--------------------------------------------------------------S-----------------
---------------------S-S---------------------------------------S-S--------------
----S-S--------------------------------------------------------SSSS-------------
--------------------------------------------S---S---------------------S---------
----
>forward_294
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----------------------------------ACTCATCGCAGGTGCAATCT--------------------------
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>reverse_2094
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-------------GCAGAGGCCAGAGGTAATCC-----------------------------------------------
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