>input_sequence_87205
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---------------------------------------------ATGACTATTGCTTTCCAATTAGCTGTTTTTGCATT
AATTGCAACTTCCTCAGTCTTAGTAATTAGTGTACCCCTTGTATTTGCTTCTCCTGATGGTTGGTCAAATAATAAAAATG
TTGTATTTTCTGGTACATCATTATGGATTGGACTAGTCTTTCTCGTAGCTATTCTGAATTCTCTCATTTCTTAA------
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>chr1B_1_TraesCS1B01G317700
AGGAATAGTAATAAGGCGCCTATGTAATACTCCCTCCGTCCGGAAATACTTGTCATCAAAAGGGATAAATGGGGATGTAT
CTAGATGTATTTTAGTTCTAAATAATCTCTTTTTATTCATTTTGATGATAAGTATTTTCGGACGGAGGGAGTAGATGAGA
TGGTTCAGAAATAGAAATGGTAACTGGGAGCCAGGGGATCAAGTTAGTGGTGCTGGGCCAGTCGGGTCGTGTGCAAGAGT
GTCAAAACGAGATGGTCTTGTTGGATGAGGTGCAGGAAGCATGTAGTAAATGAACGTGACCTACATATCTTAAACTACAG
CATGGTTAAGACACATATCTAATGGACGCGTCTAGTGGGCG-CTGGGTGCCCGCTAGCGCTCTTGAGCGTCCTGTTTTTT
TCCAT-ATAATGCGCGTAGCGTGTTGCTACTTAATCGTTCCTGTGACTAAAAAGCACACTGCTAATTAATCATCCTCTAT
GTGGTTTTATCTCACGTGATGGATGTCTACATGCCGCTGCATTAATGTTCCTCATATTCGTTCCTTGTGCATTAATTTTT
GGTTTTCAGAATTATAAAAGACATATCTTCTAAACCGCGTGTCAAAATTCAAATCCATTTTCACCGTTGATACCCTCGCG
ACGCGCTCTTCAAAAATAGATCCCGCATGGGGATGTTTCGACAAACTAGTCTTCCTATCAACTAAACATGAATGTGTGTG
CAACTAGACTACATTGCCGTGCCAACTGAGCATATGTGTGTGCC-AT-TAGTCTTGCCAACTAAACATCAATGTGTGTGC
AACTATACTATATTGTCGC-TCAACTGAGTATATATGTGTGTAATTAGGTCTGCAAACTAAATATCAATGTGTGTGCAAC
TAGACTCCATTACCGCGTCAATTGCACATATGTGTGTGTAACTAGACTACATTGCCGCTCTTCTGGTCCTTTCTTCGAAC
CCCCAATTGTCAACGGCCAGCGTGCTCCTTTGGTGGATTAGAAATATGACTATTGCTTTCCAATTAGCTGTTTTTGCATT
AATTGCAACTTCCTCAGTCTTAGTAATTAGTGTACCCCTTGTATTTGCTTCTCCTGATGGTTGGTCAAATAATAAAAATG
TTGTATTTTCTGGTACATCATTATGGATTGGACTAGTCTTTCTCGTAGCTATTCTGAATTCTCTCATTTCTTAAATTAAA
TTTGGTTAATATTTATTAATCCCATAAAAAAGAAATAATAAAGGCCATTTCTTCTAAAAAATTAGAATAGTGAGACGTAT
TAAAACGCAATTTGCGTTCTGAATTGCTAGCTCTTCTCTTTCAGTATTATGAAATTCCATTCCCATTAGAATATTCATTG
ACAGAGTGCCCTGGGATCTCATGCTCTGCATCGAGCGAAGATGCGGAAAACAGAATCGAGGTGACGAAGACGACAGAGTG
GCTAAGGCCTCTTTTTTCTAGCGAGACGGATGGATCGAGCGGTTTCTTCAGCGGTCTGACTGGATGTGTCGCGTAGTGCG
GCCGCTCGACACAACCAAATCATGCGCGCACACTTTTTAGATTTTAGGATATCTAATATACACTGTATATAGATTTTTCT
TCCCAAAAATTTTGGGTGTACATCTGTACACCCATGACCTCAGGTGGATCCGCCCCTGTCTGAGTTGCATATCTTCCTAT
CCAGATTATGTTGTGCATCAAAATGAATCTGAACATCCCAAACAGCATCATCCAAACTACAATTGACAGCACAAATTTAC
ACTGTCATAAGCAACTAACCCTAGCCCCCTGTTTTGAAATATACAGAAAGAAGGAGAGAAGAGAGAAACTTACAACACGC
CGCCAGTAGCTCCACTGGTCCACTGATGGCTACTGCTAGGGTTGGCCACCCATATCTCTGCCAGCTTCACCCTGTCCTCC
ATGGACAGCGTGGCCTCCTCCTCCAAATCCTCGCCGTCTGCGCTAGAGTAGTACAAACTGGAGCCGTCGACGTCGTCCAA
ACCTAAGTGGTAATCGCTCCCGAGGCCAGGAAGGTCTCCGTACCCGCCCGCACTGTCGTGGATCTAAGTCTGACAGTAGA
GTGGGGGGTAGGTATGGAGAGGCAAGGTTCTAGCTATGGAGAGGTTGTAAACACAAGAGATGTACGAGTTCAGGCCCTTC
TCGGAGGAAGTAAAAGCCCTACGTCTCGGAGCCC
>chr7B_341
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--------------------AATGGACGCGTCTAGCGGGCGGCTGGGCGCCCGCTAGCGCTCCTGGGCGGCCGATTTTTT
TTG--------GCACGTAGCGTGTTGTTACTTAATAATCCATGTGGATAAAAATAACACTGCTAATTAATCACTTCTTAT
GTGGTCTTTTTTCAGTTGATAGATATCTGCATGATGTTGCATTAATGTTTCTCATGTTCATTCCTTGTGCATTAATTTTT
GGTTTTCAAAATTATAAAAAACATATGTTCTAAACCGTGTGTCGAAAATCAGATCCGTTTTTATCGTTGAAACCCTCGCG
ACGTGCTCTTCAAAAATAGATCCCGCATGAGGATGTTTCGACGAACTAGTCTTCCTGCCAACTAAACATCAATGTGTGCG
CAACTAGACTACATTGCCGCGCCAACTGAGCATATGTATGCGTC-AA-TAGTCCTGCCAACTAAACATCTATGTGTGTGC
AACTAGAATACATTGCCGCGTCAACTGAGCATATGTGTGTGTAATTAGTCCTACCAACTAAATATCA--ATGTGTGCAAC
TAGACTAAATTATCGCGCCAACTGAGCATATATGTGTGTAACTAG-----------------------------------
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>chr2A_343
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----------------------TGGACGCGTCTAGCGGGCGGCTGGGCGCCCGCTAGCGCTCCTGGGCGGCCGCTTTTTT
TTG--------GCACGTAGCGTGTTGTTACTTAATAATCCATGTGGATAAAAATAACATTGCTAATTAATCACTTCTTAT
GTGGTCTTTTTTCACTTGATGGATATCTGCATGACGTTGCATTAATGTTTCTCATGTTCATCCCTTGTGCACTAATTTTT
GGTTTTTAAAATTATAAAAAACATATGTTCTAAACCGTGTGTTGAAAATCAGATCCGTTTTCATCGTTGAAACCCTCGCG
ACGTGCTCTTCAAAAATAGATCCCGCATGGGGATGTTTCGACGAACTAGTCTTCCTGCCAACTAAACATCAATGTGTGCG
CAACTAGACTACATTGCCGCGCCAACTGAGCATATGTATGCGTC-AAATAGTCCTGCCAACTAAACATCTATGTGTGTGC
AACTAGAATACATTGCCGCGTCAACTGTTCATATGTGTGTGTAATTAGTCCTGCCAACTAAACATCA--ATGTATGCAAC
TAGACTAAATTGCCACGCCAACTGAGCATATATGTGTGTAACTAG-----------------------------------
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>chr2B_344
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-----------------------GGACGCGTCTAGCGGGCGGCTGGCTGCCCGCTAGCGCTCGTGGGCGGCCTGCCTTTT
TGCCAAATAATTCGCGTAGCGTGTTGTTACTTAACCATCCCTGTGGCTAGAAAGGACACTGCTAATTAATTACCTTTTAT
GTGGTCTCTTCTCACGTGATGGATGCCTTCATGCCGTTGCATTAATGTTCCTCATATTTGTCCCTTGTGCGTTAATTTTT
GGTTTTCAAAATTATAAAAGACATATCTTCTAAACTGCGTGTCAAAATTCAGATGCATTTTCACCGTTGAAACCTCCGCG
ACGTGCTCTTCAGAAGTAGATCCCGCATGAGGATATTTCGACGAACTAGTTTTCCTGCCAACTAAACATCAATGTGTGTA
CAATTAGACTACATTGGCGCGCCAACTAAACATATGTATGTGCCAAA-TAGTCCTGCCAACTAAACATCAATGTGTGCGC
AACTAGACTACATTACCGCGCCAACTAAGCATATATGTGTAACTACCGA--TGCCAACTAAATATCAATGTGTGTGCAAC
TAGACTACATTGCTGCGTCAATTGCGCATATGTGTGTGCAACTAG-----------------------------------
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>chr3D_344
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-----------------------GGACGCGTCTAGCGGGCGGCTGGGTGCCTGCTAGCGCTCCTGGACGGCCTGCTTTTT
TT-CAAATAGTGCCCGTAGCGCGTTGTTACTTAATCATTCCTGTGACTAAAAAGGATACTGCTAATTAATTACCCATTAT
GTGGTCTCTTCTCACGTGATGGATGCCTGCATGTCGCTGCATTAATGTTCCTCATGTACGTTTCTTGTGCATTAATGTTT
GGTTTTCAAAATTATAAAAGACATATCTTCTAAACCGCGTGTTGAAATTCAGATCCGTTTTCACCATTGAAACCCTCACG
ACGTGCTCTTCAAAAATAGATTCCGCATGGGGATGTTTCGACGAACTGGTATTCCTGCCAACTAAACATCAACGTGTGTG
CAACTAGACTACATTGCCGCGCCAACTGAGCATATGTGTGCGCT-AA-CAGTCCTGCCAACTAAACATCAATGTGTGTGC
AATTAGACTACGTTGTCGCGCCAACTGAGCATA--TGTGTGTAACTAGTCATATCAACTAAACATCAATATGTGTGCAAC
TAGACTACATTGTCCCGCCAACTGAGCATATGTGTGTAACTAG-------------------------------------
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>chr5A_410
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-----------GCACGTAGCGTGTTGTTACTTAATAATCCATGTGAATAAAAATAACACTGCTAATTAATCATTTCTTAT
GTAATCTTTTTTCACTTGATGGATATCTGCATGACGTTGCATTAATGTTTCTCATGTTCATTCCTTGTGCATTAATTTTT
GGTTTTCAAAATTATGAAAAACATATGTTCTAAACCGTGTGTCGAAAATCAGATCCGTTTTCATCGTTGAAATCCTCGCG
ACGTGCTCTTCAAAAATAGATCCCGCATGGGGATATTTTGACGAACTAGTCTTCCTTCCAACTAAACATCAATGTGTGCG
CAACTAGACTACATTGCCGCGCCAACTGAGCATATGTATGCGTC-AA-TAGTCCTGCCAACTAAACATCTATGTGTGTGC
AACTAGAATACATTGCCGCGTCAACTGAGCATGTGTGTGTGTAATTAGTCCTGCCAACTAAACATCA--ATGTGTGCAAC
TAGACTAAATTGCCGCGCCAACTGAGCATATATGTGTGTAACTAG-----------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS---------------S--------------------------S--S---S----------
-S-SS---------------------S---------S-----------------S---------------------S---
-----S--S-------------------S---------------------------------------------------
--------S------------------------------------------S------------------S---------
---S--------------------------------------S-------------SS-----------S----------
-------------------S--------------------------S------S--------------------------
-----S----S------------------S------------------SS----S-------------------------
------S------------------S-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_45
-------------------------AATACTCCCTCCGTCCGGAA-----------------------------------
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>reverse_1363
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--AGAGTGCCCTGGGATCTCAT----------------------------------------------------------
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