>input_sequence_87181
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-----------------------------------------------ATGGAGGCAGTGGCGAACAAGCGCAGCGGCATC
GGATCCGGCGCCACGGCGGCCGCGGAGGAGGAGAAGGGCCGTAAGAGGGGCCACGGATCCACCGCGCTGTTCGTGGCGGT
GGACTACGCCTTCCTGCTCGCCTTCGCCGGGTTCCTCTCCTACCTCGTCGTCTCCCAGATCCTCCCTTCCGCCATCTAG-
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>chr5B_1_TraesCS5B01G119600
CCCACGCTTCTCCACGCGGCCACGCCTATATATTGGAGGCGCTGGCCAACCCTAGCCGCAACGAGAATCAAATCGCATCT
CTACATCCACGC----CCGTCATTCCTGTTGCTGATGCTACCGCCGGTGATCCCATACCGTCCACCACGTACACAGTTGA
CGGGGGAGTAGGTCTTTGAAACCCCGCCTCTCTAGATCATGTACGGTAGAGGGGCGATTAGTTTTTTGGAGA-GCGTCTC
--------CTACGCGACTGCTCATTGTCGTTCGTCCACGTCCGCTGCATCGTCTACGTTTGCATCGTCTTCATCGTCACC
ATGCCCACCGCCAACAAAGCCGATCGTGCCACCGTCGAGAAACTCGAAGCCGAGAAGAAGGACACCGAGGACGCCG----
--CCG---CGGCTTCTGCCTGA----------------------------------------------------------
---------------------------------------CCGATTGGAGGGTATAACTCGCTTATGCCTCTCATGTTTAG
TTC-CGTCTTAGTGGTACCAGCTATGTGCATATATCTTTCTACT------ATATGTGTGGTGCATGCTTATCTAGAGCGT
AATTAGTATGTTTTTAATTCTATCAATGCCATGATCATGACTATTTACTGGATTAATTTAATAAAAAAATTGTCTATTTA
TTCAACACTTTCAACCCATCTTCGGGGGAGGATAAAGAGAGCAACCTAATTGCGTATTTTTTTGCAAATTCATTATTTTA
GGAGCTTTTTGCAAATTCATTGAAGAGTGTTTGATATACCAAAAGTAAAACAAAGGAACTATCGAAATATCAAAACATG-
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-----------------------------------CACGCCTGGTGGGACTCGAACCCACAATCGTCTGATTAGAAGTCA
GACGCCTTATCCATTAGGCCACAGGCGCTGCTTTGTCTGCGTCCAACCCACGCCTCTCCTTCTTTAGTCTTCTGCGCTGC
GTCTTCTTGCGTTCCGCCGTTCTCTTGTCGTTATATCCAAGACAC-----AGCCTTCCCCGTCGTCTCCCATCTCATCAC
ATCGCCGTCGCCGGAGCGAGGTGCGGAAGAGGTCATCTGCGCTCGGGATGGAGGCAGTGGCGAACAAGCGCAGCGGCATC
GGATCCGGCGCCACGGCGGCCGCGGAGGAGGAGAAGGGCCGTAAGAGGGGCCACGGATCCACCGCGCTGTTCGTGGCGGT
GGACTACGCCTTCCTGCTCGCCTTCGCCGGGTTCCTCTCCTACCTCGTCGTCTCCCAGATCCTCCCTTCCGCCATCTAGA
TCGG-CGCCCGTCGTCGTTTGCTTCTGGATGCGATGCGTGTGAAATCCCGAGATCTTGGCTCGGGGTATGGTCACCTCCT
CCTTGTCTCGTTTGATGCAATGGATTCCGCCTCTGTAACAATCAAAATATGAGACGACAAGTAGCTCGGATGCTGTTTCT
TTGCGATTTTGCATGACGAATTGTAATGCCCCAGTCTTGCCGTGTTCTAGAACAATAAAATGCTTCAGTGTTCCTTTGTT
CATTGCTTGAAC----GACTGGATGGTGTCCATTATATA---TCAGATTGATCGTTCATGTTTACGTTATTAATATGTTG
GAGATGGATAATATTTCCAGGAACAAGAAGCTCAGGTGCATCTGAAGCGTCCCTTCTTCAGATGAGACCACAAGGCTTCC
TGCTTTCTGCCTTGGCTTCTTTCAAAATTG------------------GCAACGACTTAATTTCGACCAAGATTGACC-T
TTCCATTTCCTTCCCAAGAGGAAGAGACCAAAAAGAACCTTGTTACAACATTTCACATCAATAGTCGCATATCATCTGAC
TAGAGATGAGAAACTCTCCATGGGGCTACCAGCTACCAGCTACAGTGGTGATCTGATCAGTTAGCACATTCATAGCATTT
TCCTGGATAACCAGATATTCACAGCAGTGTTTTGCAGTTGAAGCTTACGGCAATAGCCGGACAGCTGCGATGGATGGGAT
CTTCTCTCTGAGCTTCTGTGCTACAGCAACTCGGACGGCCGCCACACCTGCTGCAGGGCCCTTGAGTTGGACTTTCACGA
AGAATTTGTTGATCGCGACAAACCTGAGATTACCGCCTCCTGCGCCGGTGAGGTATGGCCTGATCTCATCGAGTACCTGC
CATTGGGTGAAAGGAAGTAATTTTCAAATATGTACCTTTAGTTGCTCCAGCTACTGGTTTTCGCCCATATTATGGAAAGG
GCAAATAAATGTTAGATAAATCGTCTCAAGGTGTAGGACAATGTGCAA--CAAGGAGACATTGTATAA
>chr4D_1
CCCACGTCTATCCACACGTCCGCGCCTATATATTGGAGGCGCCGACCAACCCTAGCCGCCACAAAA--CATATTGCATCT
---ACCTCCGCACCCACTGTCATTCCTTTTGCTGCTGCTGCCGCCGGTGATCCCATCCCATCCACCGCGTACACGGTCGA
CGGGAGAGCAGACCTTTGAAACCCCGCCTCTCCGAATCCTATACGGGAGAGGGGCGATTAGGTTTTTGCGGA-GCATCTC
--------CTGCTTGC--------CGTCGTTCGTCCACGTCCGCTGCATCGTCTACGTCTGTGTCGTCTTTATTGTCACC
ATGCCCACCGCTTACGAAGCCGACCGTGCCACTGCTGAGAAGCTTGAAGCCGAGAAGAAGGCCACCAAGGATGCCGTTGC
CGCCG---CCGCCTCTGCCTGG----------------------------------------------------------
---------------------------------------CCGATCGGAGGGTATAACTCGCTTATCCCACTCTTGTT-AT
TAC-TGTTTTAGCCGTACTAATGATTTGCATAGATGTTTCTACT------CTCTAACTAGTACGCAGTAATATGATCAAT
TATCAGTATGTGCTTAATGTTGTTTATGTCATGCCCATGATATATTT-TTGATTAATTTAATCGAAAATTTGCTTATTTA
CTCAACACT-----------------------------------------------------------------------
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>chr4A_1
CCCACGTCTCTCCACACGTCTGTGCCTATATATTGGAGGCGCCGACCAATCCTAGCCACCACAAAA--CAGATTGCATCT
---GCCTACGCACCCACTGTTGTTCCTTTTGCTGCTGCCGCCGCCGGTGATCCCATCCCGTCCACCGCGTACACGGTCGA
CGGGAGAGCAGACATCCGAAACCCCGCCTCTCCGAATCCTATACGGGAGAGGGGCGATTAGCTTTTTGGGGA-GCGTCTC
--------CTGCTCGC--------CGCCGTTCGTCCACGTCCGCTGCATCGTCTATGTCCGTGACGTCTTTATCGTCACC
ATGCCCACCGCCAACGAAGCCGACCGTGCCACCGTTGAGAAGCTTCAAGCCGAGAAGAAGGCCACCGGGGTCGCC---GC
CGCCG---CAGCCTCTTCCTGG----------------------------------------------------------
---------------------------------------CCGATCGAAGGGTATAACTCGCTTATCCCGCTCATGTT-AT
TAC-TGTTTTAGCCATACTAGTGATTTGCGTAGATGTTTCTACT------CTATGTCTAGTACGCGGTAATATGATCAAT
TATCAGCACGTGCTTAATGTTGTTTATGTCATGCCCATGATCTATTT-TTGATTAATTTAATCAAAAA-TTGCTTATTTA
TTCAACACT-----------------------------------------------------------------------
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>chr4B_1
CCCACGTCTATCCACACATCCGCGCCTATATATTGGAGGCGCCGACCAACCCTAGCCGCCACAAAA--CAGATCGTATCT
---GCCTCCGCGCCCACCGTTGTTTCTTTTGCTACTCCTACCGCCGGTGATCCCATCCCGTCCACCGCGTACACGGTTGA
GGGGAGGGCAGACCTCTGAAAACCCGCCTCTCTGAATCCTGTATGGGAGAAGGGCGACTAGGTTTTTTGGGA-GCGTCTC
--------CTACTCGC--------CGCCGTTTGTCCACGTCTGC------------------GTCGTCTTCATCGTCACC
ATGCCCACCGCCAACAAAGGCGACCGTGCCACTGCTGAGAAGCTTGAAGCCCAGAAGAAGGTCACTGAGGCCGCCG----
--CCGTCGCGGCCACTGCCTGG----------------------------------------------------------
---------------------------------------CCGATCGAAGGGTATAACTCGCTTATCCCGCTCTTGTT-AT
TAC-TGTTTTAGCCGTACTAGTGATTTGCGTATATGTTTCTACT------CTCTGTCTAATACGCGGTAATATAGTCAAT
TATCAGTATGTGCTTAATGTTGTTTATGTCATGCCAATGATCTATTT-TTGATTAATTTAATCAAAAAATTGCTTATTTA
CTCAACACT-----------------------------------------------------------------------
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>chr5D_9
--------TCTCCATGCAGCCACGCCTATATATTGGAGGCGCTGGCCAACCCTAGCCGCAACGAGAATCAGACCGCATCT
CTGCATCCACTC----CCGTAATTCCTTTTGCTGCCGCCGCCGCCGGTGATCCCATACCGTCTACCACGTACACGGTTGA
CAGGAGAGTAGGTCTCTGTAACCCCGCCTATCTAGATCATGTATGGTAGAAGGGCAATTAGGTTTTTGGGGA-GCGTCTC
--------CTACGCGACTGCTCATCGCCGTTCGTCCATGTCCGCTGCATCGTCTACGTCTGCGTCGTCTTCATCTTCATC
ATGTCCACCGCCAACAAAGCCGATCGTGCCGCCGTCGAGAAACTCGAAGCCGAGAAGAAGGACATCGAGGACGCAG----
--CCG---CGGCTTCTGCCTGGCCGATTGGAAGGTATAACTCGCTTATCCCTCTCCTGTTTATTTCTGTCTTAGCGGTAC
CAGCTATGTGCATCGACCGCCGCCGCGGCTTCTGCCTGGCCGATTGGAGGGTATAACTCGCTTATCCCTCTCCTGTTTAT
TTC-TGTCTTAGCGGTACCAGCTATGTGCATAGATCTTTCTACT------ATATGTGTGGTGCATGCTTATCTAGAGCGT
AATCAGTATGTTTTAAATTCTATCAATGCCATGATCATGATTATTTCCTGGATTTATTTAACCAAAAAATTATCTATTTA
CTCGGCACTTTCAACCCATGTTCGGGGGA---TAAAGAGAGCAAGCTAATTGTGTATTTTTTGC--AAATTAATTTTTTA
TAATCTTTTTGCAAATTCATTGAAGAGTGTTTGATACACCAAAAGAAAAACAAAGGAACTATCGAAATATCAAAACACAC
GCCTGGCGGGACCAACCCACGTCTCTCCACGCAGCCGCGCCTATATATTAGAGGCGCTGGACAACCCTAGCCGCAACGAA
AATCAGATCGCATCTCTGCATCCACTCCCGTCATTTCTTTTGCTGCTCCCGCCACTGGTGATCCCATACCGTCTACCACG
TACACGGTTGACGGGAGTCCACTGCATCGTCTACATCTGCATCTCTTCATTGTCACTTTCAACCCATGTTCAGGGGATAA
AGAGAGCAAGCTATTTGCGTACTTTTTTGCAAATTCATTTTTGTAGGATCTTTTTGCAAATTCATTGAACAGTGTTTGAT
ACACCAAAAAAAAACAAAGAAATTGTTGAAATATCAAAACACGCTCTAAAAAACACACGCCTGGCGGGACCAACCCACGT
CTCTCCACGCAGCCGCGCCTATATATTGGAGGTGCTGGACAACCCTAGCCGCAACGAGAATCAGATTGCATCTCTGCATC
CACTCCCGTCATTTCTTTTGCTGCTGCCGCCACTGGCGATTCCATACCGTCTACCACGTATACGGTTGACGGGAGTCCNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCATCGTCACTTTCAACCCATGTTCG
GGGGATAAAGGGAGCAAGCTATTTGCATACTTTTTTGCAAATTCATTTTTGTAGGATCTTTTTGCAAATTCATTGAAGAG
TGTTTGATACACCAAAAGAAAAACAAAGAAATTGTTGAAATATCAAAACACGCTCTAAAAACCACACGCCTGGCGGGACC
AACCCACGTCTCTCCACGCAGCCGCGCCTATATATTGGAGGCGCTGGACAACCCTAGCCGCAATGAGAATCAGATTGCAT
CTCTGCATCCACTCCCGTCATTTCTTTTGCTGCTGCCGCCACTGGTGATTCCATACCGTCTATCACGTACACGGTTGACG
GGAGTCCGCTGCATCGTCTACATCTGCATCGTCACTTTCAACCCATGTTCGAGGGATAAAGAGAGCAAGCTAATTGCTTA
TTTTTTTGCAAATTCATTTTTTTAGAATCTTTTTGCAAATTCATTGAAGAGTGTTTGATACACCAAAAGAAAAACAAAGG
AACTACCAAAATATCAAAACATTCTGTAAAAAACACACGCCTGGTGGGACTCGAACCCACAATCGTCTGATTAGAAGTCA
GACGCCTTATCCATTAGGCCACAGGCGCTATTTTGTCTGCGTCCAACCCACGCCTCTCCTTCTTTAGTCTCCTGCGTTGC
GTCTTCTTGCGTTCCGCCGTTCTCTTGTCGTTATATCCAAGACAA-----ACACTTCCCCGTCGTCTCCCATCTCATCAC
ATCGCCGTCGCCGGAGCGAGGTGCGGAAGAGGTCATCTGCGCGAGGGATGGAGGCAGCGGCGAACAAGCGCAGCGGCATC
GGGTCCGGCGCCACGGCGGCCGCGGAGGAGGAGAAGGGCCGCAAGAGGGGCCACGGATCCACCGCGCTGTTCGTGGCGGT
GGACTACGCCTTCCTGCTCGCCTTCGCCGGGTTCCTCTCCTACCTCGTCGTCTCCCAGGTCCTCCCTTCCGCCATCTAGA
TCGGTCGCCCGTCGTCGTTTGCTTCTGGATGCGATGCGTGTGAAATCCCGAGATCTTGGCTCGGGGTATGGTCACCTCCT
CCTTGTCTCGTTTGATGCAATGGATTCCGCGTCTGTAACAATCAAAATATGAGACGACAAGTAGCTCGGATGCTGTTTCT
TTGCGATTTTGCATGACGAATTGTAATGCCCCAGTCTTGCCGTGTTCTAGAACAATAAAATGCTTCAGTGTTCCTTTGTT
CATGGCTTGG-CTCCTGACTGGATGGTGTCCATTATATA---TCAGATTGATTGTTCATGTTTACGTT--TTATATGTTG
AAGATGGATAATATTTCCAGGAACAAGAAGCTCAGGTGAAT--------------------------------------C
TGCTTTCCGCCTTGGCTTCTTTCAAAATCGTGTAATTTTTCAGGCAAAGCAACGAGTTAATTTCGACCAAGATTGACCTT
TTCCATTTCCTTCCCAAGAGGATGAGACCAAAA-GAACCTTGTTACAACATTTCACATCAATAGTCGCATATCATCTGAC
TAGAGATGAGAAACTCTCCATGGGGCTACCAGCTAACAGCTACAGTGGTGATCTGATCAGTTAGCACATTCATAGCATTT
TCCTGGATAACCAGATATTCACAGCAATGCTTTGCAGTTGAAGCTTACGGCAATAGCCGGACAGCTGTGATGGATGGGAT
CTTCTCTCTGAGCTTCTTTGCTACAGCAACTCGGACGGCCGCCACACCTGCTGCAGGGCCCTTGAGTTGGACTTTCACGA
AGAATTTGTTGATCGCAACAAACCTGAGATTACCGCCTCCAGCGCCGGTGAGGTATGGCCTGATCTCATCGAGTACCTGC
CATTGGGTGAAAGGAAGGAATTTTCAAATATGTACCTTTAGTTGCTCTAGCTACTGGTTTTCGCCCATATTATGGTAAGG
GCAAATAAAAGTTAGATAAATCATCTCAAGGTGTAGGACAATGTGCAAAACAAGGAGACGATGTATAA
>chr4A_52
---------------------------------------------------CTAGCCGCCACGAGA--CAGATCGCGTGT
ACAGCATCCGCGCCCACTGTCGTTCCTTTTGTTGCTGCCGCCGCCGGTGATCCTGTCACGTCCACCGCGTACACGGTTGA
TAGGAGAGCAGGCCTTTGAAACCCCGCCTCTCTAGATCATGTACGGGAGAGGGGCGATTAGGTTATTTTGGAAGCATCTC
CTATGCGACTGCTCTC--------CACCGTTCGTG---------TGCATCTACTAGGTCTGCGTCGCCTTCGTCATCATC
ATGTCCACCGACGCCAAGAGAAT------CGCCGCCGAGAAGGCTGCCACTGGCAAGAAGGCGGCCGAGGAGGCCG----
--CCGCCGCTGCTATGGCCAACTAGCCTGC--------------------------------------------------
--------------------------------------------TGTAGGGTATAATACGCTTATGCCGCTCCTGTTTTT
TTCCTGTCTTAGTAGTACTAGAAATGTACGCAGATGTTTCGGCTATATGCATATGCGCAGTACGTGCTTATCTAGATCTT
AATCAGTATGTTATTAGTTCTGTCAATGCAATGTTCATGATTATTTG-TGGATTAAATTAATCAAAAAAT-GCTAATATA
CTCAACA-------------------------------------------------------------------------
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>chr5A_689
ATT-----------------------------------------------------------------------------
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------------------ATTGAAGAGTGTTTGATACACCAAAAGAAAAACAAAGGAACTATCGAAATATCAAAACAAGC
T-------------------------------------------------------------------------------
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----------------------------------------------TAAAAAACACACGCCTGGT---------------
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-------------------------------------------GTGGGACTCGAACCCACAATCGTCTGATTAGAAGTCA
GACGCCTTATCCATTAGGCCACAGGCGCTGTTTTGTCTGCGCCAAACCCACGCATCTCCTTCTTTAGTCTTCTGCGTTGC
GTCTTCTTGGGTTCCGCCGTTCTCTTGTCGCTATATCTAAGACAAGACATAGCCTTCCCCGTCGTCTCCCATCTCATCAC
ATCGCCGTCGCCGGAGCGAGGTGCGGAAGAGGTCATCTGCGCGCGGGATGGAGGCAGCGGCGAACAAGCGCAGCGGCATC
GGGTTCGGCGCCACGGCGGCCGCGGAGGAGGAGAAGGGCCGCAAGAGGGGCCACGGATCCACCGCGCTGTTCGTGGCGGT
GGACTACGCCTTCCTGCTCGCCTTCGCCGGGTTCCTCGCCTACCTCGTCGTCTCCCAGATCCTCCCTTCCGCCATCTAGA
TCGGTCGCCCGTCGTCGTTTGCTTCTGGATGCGATGCGTGTGAAATCCCGAGATCTTGGCTCGGGGTATAGTCACCTCCT
CCTTGTCTCGTTTGATGCAATGGATTCCGCGTCTGTAACAATCAAAATATGAGACGACAAGTAGCTCGGATGCTGTTCCT
TTGCGATTTTGCATGACGAATTGTAATGCCCCAGTCTTGCCGTGTTCTAGAACAATAAAATGCTTCAGTGTTCCTTTGTT
CATGGCTTGAACTCCTGACTGGATGGTGTCCATTATATACTATCAGATTGATTGTTCATGTTTATGTTATTTATATGTTG
AAGATGGATAATATTTCCAGGAACAAGAAGCTCAGGTGAATCTGAAGCGTCCCTTCTTCAGATGAGACCACAAGGCTTCA
TGCTTTCTGCCTTGGCTTCTTTCAAAATCATGTAATTTTTCAGGCAAAGCAACGAGTTAATTTCGACCAAGATTGACCTT
TTCCATTTCCTTCCCAAGAGGAGGAGACCAAAA-GAACCTTGTTACAACATTTCACATCAATAGTCGCATATCATCTGAC
TAGAGATGAGAAACTCTCCATGGGGCTACCAGCTAACAGCTACAGTGGTGATCTGATCAGTTAGCGCATTCATAGCATTC
TCCTGGATAACCAGATATTCACAGCAATGTTTTGCAGTTGAAGTTTACGGCAGTAGCCGGACAGCTGCGATGGATGGGAT
CTTCTCTTTGAGCTTCTGTGCTATAGCAACTCGGACGGCCGCCACACCTGCTGCAGGGCCCTTGAGTTGGACTTTCACGA
AGAATTTGTTGATCGCGACAAACCTGAGATTACCGCCTCCTGCACCGGTGAGGTATGGCCTGATCTCATCGAGTACCTGC
CATTGGGTGAAAGGAAGGAATTTTCAAAGATGTACCTTTATTTGCTCCAGCTACTGGTTTTCGCCCATATTATGGAAAGG
GCCAATAAAAGTTA------------------------------------------------------
>SNPs
------SS--------------------------------------------------------------S---------
----------S----------------S------S---------------------------------------S-----
----S--------------------------------------------------------S-------S----------
------------------------S---------------------------------S---S-----------------
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---------------------S----------------------------------------------------------
-------------------------------------------------------------------------------S
----S---------------------------------------------------------------------------
---S------------------------------------S-----S---------------S-----------------
-------------------S---------SSS------------S-------S---------SSSS--S-S-S-S-----
SS-S--------------------------------S--------S-------------------------------S--
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------------------------------S---------------------------------------------S---
--------------------------------------------S-----------------------------------
------------------------------------------S--------------S----------------------
--S--------------------------------------S--------------------------------------
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------------------------------S-------------------------------------------------
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---S------------------------------------------------S------------------S--------
S-------------------------------------S-----------------------------------------
----------------------------S--------------------------S------------------------
----------------------S----------S----------------------------------------------
-----------------------------------S--------------------------------------------
--------------------------S-----------------------------------------------------
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-----------------S--------------------------------------------------------------
---------S------------S------------------------------------SS-------
>forward_265
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-----CTCCTACGCGACTGCTCATT-------------------------------------------------------
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>reverse_2964
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---TGCTTGAACGACTGGATGGT---------------------------------------------------------
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