>input_sequence_87178
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----------------------------------------------------------------------ATGGCAGGCG
GCAGAGTTGCACATGCGACCCTCAAGGGGCCGAGCGTGGTGAAGGAGATCTTCATTGGACTCACCCTTGGGCTGGTTGCT
GGTGGTATGTGGAAGATGCATCACTGGAACGAGCAGAGGAAGACGCGATCCTTCTACGACATGCTTGAGAAGGGGCAGAT
CAGCGTCGTTGTCGAGGAGTAG----------------------------------------------------------
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>chr5A_1_TraesCS5A01G088200
ACCCCAAGTGCAAACTTATCATAGATCTCATCAAGTATACTTTCTGTGGGTATTTTCTTTGATGGAAAGGATTTTTTTTA
ATTTTCTTAGTGATTTCTTGAATTTGAGTGAACCCGGTCTTGACTTATCTTGTAGTTTGTCTGTAACTTCTTAAATATGC
ATTGTGTTGAAGAAAATGATCTGTTGTGGCAATTATGATG---------------------TTATTGTCCATCTTCTTTT
GGCTGAGTGCTTCGTATGGAACAATGCATAATTTGAGTGGTGATTGTTGGATTTGCTAGGATGTTGATAATTTATGGTTA
ATCTGATGATGGGTGATAAGGAAGTTCCTCCCAACTAATTGCTTTGCCTCATTTATGCTTTGTTGACTACGACGCCTGTG
TCCTCTGTGCATGAGTGGCAGGTTAGGTGAAGGGTACACTGCATACATTTTTTGTTCTTGAAAGAAGCAATGATTGATGC
TGAGG-----ACCATTTATTGTGTCACATTTTTTCCCTGCTCCATCTTAAGATGCCTTTTTAAAAACTTGGGCGGTGGAA
TAGTATGATACTAGGATGTGCAAAAGCAGGGAGTTGACTCTTTTTGCAACTACTATTGTTCTCTAGAGAGGTTTTGATGA
GTAGTTTGAGGAATCAGAACCTGTTCCTCACACTCTACTGTTTGTGAATCATGCTGGTTTAACATAGCTGGGTCCACTAA
TTTTACAACTCAAAATCTTGAAATTCTTGATTCACATTCTAGTTCTTCCAGTCTCAACTCGGTTATGTCTTGAAAATTTG
TACAGACTTGTTTTTGCGCAATTAACCCAAGTGACCTTTGAACGCTTGAAAAATCATATATCATGGCCTAATTGTTTTAT
GTTGTTTGCACATGCATGCCTGCATTTATTTAAAGTATCTTGCTGC---CTTGGTGAAGATATGCTGTCACCATGTTCCC
ACTAAATCAGCTCACAGAATCTTCTCATTTTCTGCAGGCATTTTGGCATC-TGAGCCCAACAGCTAGCAGATGGCAGGCG
GCAGAGTTGCACATGCGACCCTCAAGGGGCCGAGCGTGGTGAAGGAGATCTTCATTGGACTCACCCTTGGGCTGGTTGCT
GGTGGTATGTGGAAGATGCATCACTGGAACGAGCAGAGGAAGACGCGATCCTTCTACGACATGCTTGAGAAGGGGCAGAT
CAGCGTCGTTGTCGAGGAGTAGTTCTGAAGTGCTGAACCAGAAGTTCTACATCTCGAAGTCTTTTGTCATTTTGGTTTTG
CCAGTAATTTCTGAAACTCTCTGGAGAGCATGACAGAGTGATTGCTGTGGAGATTGTCATGAAAATAAGCACACCACCAT
TTGAGAACATCGAACCATTTTGAATTTGCTTTTTGTCGTATCAAATATGTCTTGTCTCATATGTGTTGCAAACCAATTCA
GCGATTGGAAGGCTTCCCTCTGACATGAATATGATTTAGATTTCACTGTCATCCTTTTGGAAGTGAGCT-----------
-----------------------AACAAGCTACTCCTTATGTTTGATATTATCATGAATGGAACAAGCACCATCATTATG
ACCTATAACTGGTGCTCTTCTATCTGGTGATGTCATTTGGTTCGGTCAAGATAAGTTTTTAAGGTTTTCCCTTGCCTTTC
ACCGTCGTTTTCGTATGCGGTCACGAGTTTAGTTTTCTGATGACGGATCTCGTTCTGCTTGCTTACGCTACAGTCATTAG
CCATTATTGCGTGATTACTGATCAAAGGTGCTG-----------------------------------------------
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-----------------------------------------------------ATGTATACGCTGTTTCTTCCCTGTT--
----GTAACACATATCTTGATGGTTGCGACATGGATTGTGACCTAGTGGTACCATTTGATTCTTGTCACCTTGCTTTTGC
CTATGAAAAGGTTGGAATAGATGCATGCAAGAAAATAAAACAACATAGAACAGAGAGCTGTCGGACAGAATCCAGGAGGA
ACCTTGAAGCTGAAGATCTTTCTCTGCTTTTGAGCACTTGGTGTTTCTCTGCACTCAAGCTGATTCGATGCCTTCCACCT
TACTTGTGATTTGACATGAGCCCACAGATTTACACAGACTTGGTGTGGGCTAAAAAAACCATGTGAATCTGCGAAACTGG
CCAAACTGTTCTTCATTCAATTCAACAAGAAACCAACATCCGGTGACTGTTGTAAAATCTGATCAAACACTTGAATTATT
ACTTGGAACACTGCAGAATTTACACTGAACACTGGAACCAAA
>chr5D_1
ACCCCAAGTGCAAACTTATTATAGATCTCATCAAGTATACTTTCTGTGGGTATTTTCTTTGATGGAAAGGATTTTTTAT-
-TTTTCTTAGTGATATCTTGAATTTGAGTGAACCTGGTCTTGACTTATCTTGTAGTTTGTCTGTAACTTCTTAAATATGC
ATTGTGTTGAAGAAAATGACTTGTTGTGGCAATTATGATGCTGCCTTCTACAAGCCAAATGTCATTGTCCATCTTCTTTT
GGCCGAGTGCTTTGTATGAAACAATGCATAATTTGAGTGGTGATTGTTGCATTTGCTAGGATGTTGATAATTTATGGTTA
ATCTGATGATGGGTGATAAGGAAGTTCCTCCCAACTAATTGCTTTGCCTCATTTATGCTTTATTGACTACGACGGTTGTG
TCCTCTGTGCATGAGTGGCAGGTTAGGTGAAGGGTACACTGCATACATTTTTTGTTCTTGAAAGAAGCAATGATTGATGC
TGAGGATGGAACCATTTATTGTGTCACATTTTTTCCCTGCTCCATCTTAAAATACCTTTTTAAAAACTTGGGCGGTGGAA
TAGTATGATACTAGGATC--CAAATGCAGGGAGTTGACTCTTTTTGTAACTACTATTGTTCACGAAAGAGGTTTTGCTGA
GCAGTT-GATGAATCAGAGCCTCTTTTTCATACTCTATTGTTTGTGAATCATGCTGGTTTAACATAGCTTGGTCAACTAA
TTTTACAACTCAAAATCTTGAAGTTCTTGATTCATATTCTAGTTCTTCCAGTTTCAGCTTGGTTACGTCTTGAAAATTTG
CACTGACTTGTTTTTGTGCAATTAACCCAAGCGACCTTTGGATGCGTGAAATACCATATATCATGTCCTGATTGTTTTAT
GTTGTTTGCA----CATGCCTGCATTTGTTTAAAGTATCTTGCTGCTGCCTTGGTGAAGATATGCTGTCACCATGTTCCC
ACGAAATCAGCTCACAGAATCTTCTCATCTTCTGCAGGCATTTTGGCATCTTGAGCCCAACAGCTAGCAGATGGCAGGCG
GCAGAGTTGCACATGCGACCCTCAAGGGGCCGAGCGTGGTGAAGGAGATCTTCATTGGACTCACCCTTGGGCTGGTTGCT
GGTGGTATGTGGAAGATGCATCACTGGAACGAGCAGAGGAAGACCCGATCCTTCTATGACATGCTCGAGAAGGGGCAGAT
CAGCGTCGTTGTCGAGGAGTAGTTCTGAAGTGCTGAACCAGAAGTTCTACATCTCGAAGTCTTTTGTCATTTTGGTTTTG
CCAGTAATTTCTGAAACTCTCTGGAGAGCATGACAGAGTGATTGCTGTGGAGATTGTCATGAAAATAAGCACACCACCAT
TTGAGAACATCGAATCATTTTGAATTTGCTTTTTGTCCTATCAAATATGTCTTGTCTCATATGTGTTGCAAACAAATTCA
GGGTTTGGAAGGCTTCCCTCTGACATGAATATGATTTAGGTTTCACTGTCATCCTTTTGGAAGTGAGCTCACCCTTTTGG
CTTAATGCAATGGTGGGATGCCTAACAAGCTACTCCTTGTGTTTGATATTATCATGAATGGAACAAGCACCATCATTATG
ACTTATAACTGGTGTTCTTCTATCTGGTGATGTCATTTGGTTCGGTCAAGATAAGTTTTTAAGGTTTTCCCTTGCCTTTC
ACCGTCGTTTTCGTATGCGGTCATGAGTTTAGTTTTCTGATGACGGATCTTGTTCTGCTTGCTTACACTACCGTCATTAA
CCATTATTGCGTGATTACTGATCAAAGGTGCTG-----------------------------------------------
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-----------------------------------------------------ATGTATATTCTGTTTCTTCCCTGTT--
----GGAACACATATCTTGATGGTTGTGACATGGGTTGTGATCTAGTGGTACCATTTGATTCTTGTCACCTTGCTTTTGC
CTCTGCAAAGGTTGGAATAGATGCAAGAAAAT-----AAACAACATAGAACAGAGAGCTGTCGGATAGAATCCAGGAGGA
ACCTTGAAGCTGAAGATCTTTCTCTGCTTTTGAGCACTTGATGTTTCTCTGCACTCAAGGTGATTCGATGCCTTCCACCT
TATTTGTGATTTGATAGGAGCCCACAGATTTATAC-GACTTGGTGTGGGCTCAAAAAACCATGTGAATCTGCAAAACTGG
CCAAATTGTTCTTCATTCAATTCAACAAGAAACCAACATCCGGTGACTATCGTAAAATCTGATCAAACACTTGAATTAAT
ACTTGGAACACAGCAGAATTTACACTGAACACTGGAACCAAA
>chr5B_3
--CCCAAGTGCAAACTTACCATAGATCTCATCAAGTATAC-TTCTGTGGGTATTTTCTTTGATGGAAAAGAT--TTTTTA
ATTTTCTTAGTGATTTCTTGAATTTGAGTGAACCTGGTCTTGACTTATCTTGTAGTTTGTCTGTAACTTCTTAAATATGC
ATTGTGTTGAAGAAAATGACCTGTTGTGGCAATTATGATGCCGCCTTCTACAAGCCTAATGTTATTGTCCATCTTCTTTT
GGCCGAGTGCTTCGTATGAAACAATGCATAATTTGAGTGGTGATTGTTGCATTTGCTAGGATGTTGATAATTTATGGTTA
ATCTGATGATGGGTGATAAGGAAGTTCCTCCCAACTAATTGCTTTGCCTCATTTATGCTTTATTGACTACGACGGTTGTG
TCCTCTGTGCATGAGTGGCAGGTTAAGTGAAGGGTACACTGCATACATTTTTTGTTCTTGAAAGAAGCAATGATTGATGC
TGAGGATGGAACCATTTATTGTGTCACATTTTTTCCCTGCTCCATCTTAAGATTCCTTTTTAAAAACTTGGGCGGTGGAA
TAGTATGATACTAGGATGTGCAAAAGCAGGGAGTTGACTCTTTTTGCAACTGCTATTGTTCTCTAGAGAGGTTTTGAGGA
GCAGTT-GATGTATCAAAACCTCTTCTTCATACTCTACTGTTTGTGGATCATGCTGGTTTGACATAGCTGGGGTCACTAA
TTTTAGAACTCAAAATCTTGAAGTTCTTGATTCATATTTTAGTTCTTCCAGTCTAAACTCGGTTACGTCTTGAAAGTTTG
TACTGACTTGTTTTTGTGCAATTAACCCAAGTGACCTTTGAACGCATGAAAAACCATATATCATGGCCTAATTGTTTTAT
GTTGTTTGCACATGCATGCCTGCATTTATTTAAAGTATCTTGCTGC---CTTGGTGAAGATATGCTGTCACCATGTTCCC
ACGAAATCAGCTCACAGAATCTTCTCATTTTCTGCAGGCATTTTGGCATC-TGAGCCCAACAGCTAGCAGATGGCAGGCG
GCAGAGTTGCACATGCGACCCTCAAGGGGCCAAGCGTGGTGAAGGAGATCTTCATTGGACTCACCCTTGGGCTGGTTGCT
GGTGGTATGTGGAAGATGCATCACTGGAACGAGCAGAGGAAGACCCGATCCTTCTACGACATGCTCGAGAAGGGGCAGAT
CAGCGTCGTTGTCGAGGAGTAGTTCTGAAGTGCTGAATCAGAAGTTCTACATCTCGAAGTCTTTTGTCATTTTGGTTTTG
CCAGTAATTTCTGAAACTCTCTGGAGAGCATGACAGAGTGATTGCTGTGGAGATTGTCATGAAAATAAGCACACCACCAT
TTGAGAACATTGAACCATTTTGAATTTGCTTTCTGTCGTATCAAATATGTCTTGTCTCATATGTGTTGCAAACAAATTCA
GGGATTGGAAGGCTTCCCTCTGACATGAATATGATTTAGATTTCACTGTCATCCTTTTGGAAGTGAGCTCACCTTTTTGG
CTTAATGCAATGGTGGGATGCCTAACAAGCTACTCCTTGTGTTTGATATTATCATGAATGGAACAAGCACCATCATTATG
ACTTATAACTGGTGCTCTTCTATCTGGTGATGTCATTTGGTTCGGTCAAGATAAGTTTTTAAGGTTTTCCCTTGGCTTTC
ACCGTCGTTTTCATATGCGGTCATGAGTTTAGTTTTCTGATGACGGATCTCGTTCTGCTTGCTTACACTACCGTCATTAA
CCATTATTGCTTGATTACTGATCAAAGTTGATGATGTATATGCGAAAATCCAAATCTGAGCCCGAGCTCATCTGCACCTG
CGCTCACCAAAAAAATCAAAATAAATACTAAAAACATTCAAAAAATTCCAAAAAAAATTGGGGTGGTGAACAATTTGATG
TGTGAGGTGCGCCCCAATTTTCAAAACATTTGGACTTATGTGCAGCTCTTAGCAAAAAAGACAAATCGGAGGTCTGTAAA
AATGTGTACTGTTCATATACTGTTTTGGTCTGATTTGTCTTTTTTGCTGAGAGCTGCACATAAGTCCCAATGTTTTGAAA
ATTGGGGCGCACCTCACGCATCAAATTGTCCACCACCTCAATTTTTTTCGGAATTTTTTGATTTTTTCGGAATTTTTTAC
GAATTTTTTTTTGAACGGGTGCAGATGCACCCGGGCACCGAAACGCCGCACTCATGTATATGCTGTTTCTTCCCTGTTGG
AACAGGAACACATATCTTGATGGTTGTGACATGAGTTGTGACC---TGGTACTATTTGATTCTTGTGACCTTGCTTTTGC
CTCTGCAAAGGTTGGAATAGATGCAAGAAAAT-----AAACAACATAGAACAGAGAGCTGTCGGACAGAATCCAGGAGGA
ACCTTGAAGCTGAAGATCTTTCTCTGCTTTTGAGCACTTGATGTTTCTCTGCACTCAAGGTGATTCGATGCCTTCCACCT
TACTTGTGATTTGATATGAGCCCACAGATTTATAT-GACTTAGTGTGGGCTCAGAAAACCATGTGAATCTACAAAACCGG
CCAAACTATTCTTCATTCAATTCAACAAGAAACCAACATCCGGTGACCGTCGTAAAATCTGATCAAACACTTTGATTATT
ACTTGGAACACAGCAGAATCTACACTGAACACTGGAACCAAA
>SNPs
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-------------------S------------------------------------------------------------
---S--------------S------------------------------S------------------------------
-------------------------------------------------------------S------------SS----
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-S----S--S------------S---S---S-------------------------------------------------
----------------------S-----------S------------------------------S--------------
---S------------S----------------------------S-------S--------------------------
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--S-----------------------------------------------------------------------------
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--------------------------------------------S--------------------S--------------
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-------------------------------------------------------------------------S------
-S------------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
--S-----------------------------------------------------------------------------
-----------------------S------------------------------------------S----S-------S
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------------------------------------------------------------S-------------------
-----S--------------------S-------S---------------------------------------------
--S--S-------------------S-S--SSSSSSS-------------------------------------------
----------------------------------------S------------------S--------------------
--------------S-----------------S--S---------------S--------------------S-------
--------------------------------------------------S-----------------------------
-----------S------------------------------
>forward_259
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-------------------------------------------------------------------------------T
GGCTGAGTGCTTCGTATGG-------------------------------------------------------------
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>reverse_2513
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--------------------------------CACAGACTTGGTGTGGGCTA----------------------------
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