>input_sequence_87175
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--------------------ATGGAGCGGCAGGGCGACTCGAGGCGGCCTCTGCCGAGGCGCGGGCAGGTGAAGGCGAGC
ATATTCGCGTGCCTCTTCCCGTGCCTCGCACGCAACCGCAAGGCAGCCGGAGGCGAGCAGAAGGGAGGCAAGGCCAGGGC
CAAGGAAGGCGGCAGCGGCAGCGGCGGCCGCCGCGTCGCGCCCGGTGGTTGA----------------------------
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>chr4B_1_TraesCS4B01G198000
TTATGTC-TCCTGCTCCTCTGATCTCTTG---TTAGTACTTTTGTTACCGTGCACTGCCTTAGAGATTCCAGACACTTCT
GAAATGTGAAGAGAAAATTTGTCCATCCCGAGAGAGCGAAGACTTTTTCCCCAATGCGAACAGAATATATAGGTTGGT--
-------CCGAAGGTCACAGTGTGGAATTCAAGTCAACTGCTCCCCGGGCGTACAAAATAA-TTTTCCTTGTAACATCTC
TGTCCATCCGCCGCTGTATTTTAGTTCGCTCCTAGTGCATCATTGTACGGCTTTTCCTGCAGGTTATCTTATTTTATGCC
CT-----GTGTTTGGGCACTTGCAA-------------------GCCCGACCTGAGCGGTCGATGCTGAAAGTTGTGATC
CAGAAAATCTC--GGTTTTCTTCTAGTGCCATGGCCCATGGCCATGGGTAGGTTAGTGCTTAAACTATATCCACGCACCG
TAGGCAGGCAGACAGTGGCATGGTTTTC----TATGTCATTCCAGCTGGAGTGTTGAACTTGAGAACCTGGTCAGTTAGT
GGCGCGACCCAGCATTTTTCAGACAGAATCCTGCAGCGACCCAACCCAAAACACCA--------ATTTTTTTTTCTACCC
AGG---CCAGGCTTGCTTGCTGATGAGTTATCTG----CTACCGGGCTGGAGTGCTGGATTGACAAGTAACAGTGGCTAA
ACACACCAGGCTGGCGCGTATCTGACTTAGATCTTCAG----TCTGAAGGTAGCGTACGCAGAAAGATTTGCCCAGG---
-----------CAGTACAGTGACATCCCAAAGTTGAGGCTCGAGCCAGGGCCGAGGCCCAAGCCCAAACCCTAAAGTTTC
CACAAGATGGAGCTCGAACTGTGGAGAGCAGC------------------TGCTTGCATCCCAAGGAACCTTGGC-----
------------------------TATAAAAGGGCGCGACTCTAGCGGTCACTCCCCTCACATCGCACACAAGCACAAGC
CCACACGCCAACCTTCACGCGCT--CTTCTCTCGACC-----CTTCTTCTTCCTGGCCTTCGGAGCAAGAAGGCGCCAGC
AGCAGCCA---------GCAATGGAGCGGCAGGGCGACTCGAGGCGGCCTCTGCCGAGGCGCGGGCAGGTGAAGGCGAGC
ATATTCGCGTGCCTCTTCCCGTGCCTCGCACGCAACCGCAAGGCAGCCGGAGGCGAGCAGAAGGGAGGCAAGGCCAGGGC
CAAGGAAGGCGGCAGCGGCAGCGGCGGCCGCCGCGTCGCGCCCGGTGGTTGATCCGGCCCGGGGAAG-------------
-----GAGGGATGGATATGGATATATGGAGTCTGATGATCTCTGAAGAAAAGAAAGAGTCAAGAATTGCTG---CAGGCC
CGGTTCTTGTTCTTGAGC-GGAAGCCGTTCTGTTGGAGCGCGGGATGAGGGTGGACGA----------GGGTTCGCAGGT
ACGGTAGGGGGTGTTGGAGGGGAATAAACATTTTCGTTTTTTCTGGCTGTGTGGAATTCCGTTGTGATTCCGCAGCAGCT
TTTGGCCAACTTGTGGAGTCCGTAGCCTCGCAGTGATTTTGGATCCTTTGTTGCGGGTGGGTGTATGTATGTGTTGTTGT
ATATGCTACTGTACGTAATTGCCATTGAGTGATGAACTTGTCATGAATTTCTGGCCTTTCTGGTGTTGTCTGTCTATGGT
GTGTACTCTGGTTTCTGCACTTGAATTTCT------------------------------------------------TC
TCTGCATCTCCGTCGCAGAGTACATGGTACATTCACTCAATGACCTTTTCTCGCCTGCATGTCCAAGATTGGCGAGGTTA
CACCATCATCACAGGATAACGAAACAGCAGTAACAAAGTTATTAAAGCTAACACCATGAACAAAACCAAATTTATCAAGC
TTGTGGTACGACAAGCAGCGAAAGGTAATCACAGGCTGCATCATCCGTCGTCCCAGACCGTCAGCGTCAGGGTTCAACCG
ATGAACAACAACTCCTGCATTGCCCCGCATCGACTGCGTTCGTCGTTGACAAGTCATCCCCGTGTCCCTATTTTTACCGG
TGGCATGGCATTTCCACAGGCGCTGATTGGCTGGTGGGCGCACAATCTCCCCAGCTCACCCCATGGCCATGAGGCAACGA
CACCTGGGGTGCCCGCC--CAGGCGGGCGTGTAAACATCGAGGTCGAGGTGCTTCGCGGCCAAGTCTTCTCCTCCTGCAA
GGGCCCT------------CCATGCCGCAATCAACATCATCCACAAATTTGCCAACGAAACCCTAGAAAGCAGAAATTGC
AAAAAAAAAAAAAAAACCTAGAAAGC
>chr4A_1
TTATGTTTTCCTGCTTCTCTTATCTCTCG---TTATTACTTTTGTTACCGTGCATTGCCTTAAAGATTCCAGACACTTCT
GAAATGTGAAGAGAAAATTTGTCCATCCCGAGAGAGCGAAGACTTTTTCCCCAATGCGAACAGAATATATAGGTTGGT--
-------C----------AGTGTGGAATTCAAGTCAACTTCTCCCCGGGCGTACAAAATAGTTTTTCCTTGTAACATCTC
-GTACATCTGCCGCTGTATTTTAGTTCGCTGCCAGTGCATTATTGTACAGCTTTTCCTGCAGGTTATCATATTTTATGCC
CTGTGCTGTGTTTGGGCACTTGCAATCTCCATGGCCAACGGAGAGCCCGGCCTGAACGGTCCATGCTGAAAGTTGTGATC
GAGAAAATCTCTATATTTTCTTCTAGTG-------CCATGGTCATGGGTAGGTTAGTGCTTAAACTATATCCACTCATCG
TAGGCAGGCAGACAGTGGCGTAGTTTTC----TATATCATTCCAGCTGGAGTGTTGAACTTCAGAACCAC----------
------------CATTTTTCAGACAGAATCCTGCAGCGAGCCAACACAAAACACATACAGTACTATATTTTTTTCTTTCT
TTCTACCCAGGCTTGCTTGCTGGTGAGTTATGTATGTACTACCGGACTGGTGTGCTGGGCTGACTAGTAACAGTGGATAA
ACACACCAGGCTGGCGCGTATCTGATTTAGATCTTCATCACCTCTGAAGGTAGCGTATCCAGAAAGCTTTGCCCCAGGCA
GGCAGTAGAGTCAGTACAGTGACATCTCAAGGTTCAGACTCGAGCCAGGGCTGCTGAG---GCGCAGACCCGAAAGTTTC
CAGAAGACGGAGTTCGAA-------------C------------------TGCTTGCACCCCAAGGAACCTTGGCCCTCA
CTCTTCCCAGTACATTGGCTTGGCTATAAAAGGGCGCGGCTCTGGCGGTCACTCCCCTCACATCGCACACAAGCACAAGC
CCACACGCCAACCTTCCTTCACACGCTCCTCTCGACC-----C---TTCTTCCTGGCTTTCGGAGCAAGAAGGCGC---C
TGCAGCAGCGGCGGCCCGCAATGGAGCGGCAGGGCGACTCGAGGCGGCCTCTGCCGAGGCGCGGGCAGGTGAAGGCGAGC
ATATTCGCGTGCCTCTTCCCGTGCCTCGCCCGCAACCGCAAGGCGGCCGGCGGCGAGCGGAAGGAGGGCAAGGCCAGGGC
CAAGGAAG------GCGGCAGCGGCGGCCGCCGCGTCGCGCCCGGTGGTTGATCCGGT-----CCGGCCCGTGCCCGGGG
AAGGAGGGATGG----AT-------------CTGATGATCTCTGAAGAAAAGAAAGAATCAAGAATTGCTGCTGCAGGTC
CGGTTCTTGTTCTTGAGCCGGAAGCCGTTCTGTTGGGACGCGGGATGAGGGTGGACGATTTGGTGGTCGGGTTCGCTGGT
ACGATAGGGGGTGTTGGAGGGGAATAA-CATTTTCCTTTTTGCTGGCTGCATGGAATTCCGTTGTGATTCCGCAGCAGCT
TTTGGCCAACATGTGGAGTCCGTAGTCTCGCAGTGATTT-GGATCGTTTGTT----GTGGGTGTATGTATGTGTT---GT
ATATGCTACTGTACGTAATTGCCATTGAGTGATGAACTTGTCATGAATTTCTGTTCTTTCTGGTGTTGTCTGTCTATGGT
CTGTACTCCGGTTTCTGCACTTGAATTTCTTCTCTGCATCTCCGTCGCGGAGTACATTCAT----TGAACAAGCCCGCTC
TCTGCATCTCCGTCGCAGAGTACATGGTACATTCACTC--------------------------AAGATTGGCGAGGTTA
CAGT---ATCACAGGATAACGAAACAGCAGTAACAAAGTTATTAAAGCTAACACCATGAACAAAACCAAATT-ATCAAGC
TTGTGGTACAACAAGCAGCAAAAGGTAATCAGAGGCTGCATCATCCGTCGTCCCGGGTCGTCAGTGTCAGGGTTCAACCG
ATGAACAACTACTCCTGCATTGCACCGCATCGACTGCGTTCGTCGTTGACAAGTCATCCCCATGCTCCTTTTTTTACCGG
TGGCATGGCATTTCCACAGGCGCTGATTGGCTGGTGGGCGCGCAATCTCCCCAGCCCACCCCATGGCCACGAGGCAACGA
CACCTGGGTGCCCGCCTGAGC-----------------CGAGGTCGAGGTGCTTCGCGGCGAAGTCTTCTCCTCCTGCAA
GGGCCCT------------CCCTCCGC-----------------------------------------------------
--------------------------
>chr4D_1
TTATGTTTTCCCGCTCCTCGTATCTCTCGTTATTATTACTTTTGTTACGGTGCATTGCCTTA--GATTCCAGACACTTCT
GAAATGTGAACAGAAAATTTGTCCATCCCGAGAGAGCGAAGACTTTTTCCCCGATGCGAACAGAATATAAGGTTGGTCCG
AAGGTCAC----------AGTGTGGAATTCAAGTCAACTGCTCCCCGGGCGCACAAAATAGTTTTTCCTTGTAACATCTC
TATACATCTGCCGCTGTATTTTAGTTCGCTGCGAGTGCATTATTGTACGGCTTTTCCTGCAGGTTATCATATTTTATGCC
CT-----GCGTTTGGGCGCTTGCAATCTCCATGGCCAACGGAGAGCCTGACCTGAACGGTCGATGCTGAAAGTTGTGATC
CAGAAAATCTC--TATTTTCTTCTAGTG-------CCATGGCCATGGGTAGTTTAGTGCTTAAACTATATCCACTCGCCG
TAGGCAGGCAGACAGTGGCGTAGTTTTCTACGTATATCATTCCAGCTGGAGTGTTGAACTTCAGAACCACA---------
-------------ATTTTTCAGACAGAATCCTGCAGCGAGCCAACACGAAACACCAAAAAAAAA-------TTCCTACCC
AGG---CCAGGCTTGCTTGCTGGTGAGTTATGTACC----ACCGGGCTGGAGTGCTGGGCTGACAAGTAACAGTGGCTAA
ACACACCAGGCTGGCGCGTATCTGATTTAGATCTTCATCACCTCTGAAGGTAGCGTATCCAGAAAGCTTTTGCCC---CA
GGCAGTACAGTCACTACAGTGACATCGCAAGGTTCAGACTCGAGCCAGGGCTG---AG---GCGCAGACCCGAAAGTTTC
CAGAAGATGGAGTTCGAA-------------CCGTGAAGGGCAGGGCAGCTGCTTGCATCCCAAGGAACCTTGGCCCTCA
CTGTTCCCAG----TTCGCCTGGCTATAAAACGGCAGAGACTCTGCGTTCACTCCCCTCACATCGCACACAAGCACAAGC
CCACACGCCAACCTTCCTTCACACGCTCCTCTCTCGACCCTTC---TTCTTCCTGGCTTTCGGAGCAAGAAGGCGC---C
AGCAGCCA---------GCAATGGAGCGGCAGGGCGACTCGAGGCGGCCTCTGCCGAGGCGCGGGCAGGTGAAGGCCAGC
ATATTCGCGTGCCTCTTCCCGTGCCTCTTCCGCAAGGCG---------------GAGCGGAAGGAGGGCAAGGCCAGGGC
TAAAGAAG------GCGGCAGCGGCGGCCGCCGCGTCGCGCCCGGTGGTTGATCCGGCCTGGCCCGGCACGTGCCCGGGG
AAGGAGAGGGATGGATAT-------------ATGATGATCTCTGAAGA----AAAGAATCAAGAATTGCTGCGGT-----
-------------------------CGTTCTCTTGGAACGCGAAATGGGGGTGGGCGATTGGGGGTC-GGGGTCGCTGGT
AAGGTAGGGGGTGTTGGAGGGGAATAA-CATTTTCGTTTTTTCTGGCTGTATGGAATTCCGTTGTAATTCCGCAGC---T
TTTGGCGAACATGTGGAGTCCGTAGCCTCGCAGTGATTT-GGATCGTTTT-----GGTGGATGTATGTATGTGTG---GT
ATATACTACTGTACGTAATTGCCATTAGTTGGTGAACTTATCATGAATTTCTAGCCTTTCTAGTGTTGTGC----ATGGT
GTGTGCTCCGGTCTCTGCACTTGAATTTCTTCTCTGCATCTCCGTGGCGAAGTACATTGACTGACTGAACAAGCTCGCTC
TCCGCATCTCCGTCGCAGAGTACATGGATTGAACAGGAGCGCT-------------------------------------
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-------------------------------CAGGCTGCAACATCCGTCGTCCCAGACCGTCAGCGTCAGTGTTCAACCG
AAGAATAACTACTCCTGCGTTGCATTGTATCGACTGCGTTCGATGCTGACC-----------------------------
------------------GGCGCTGATTGGCTGGTGGGCGCACAATCTCCCCCGCTCGCC------CCATGAGGCAACGA
CACCTCAGCATGCACAGTGCCGGCGTGCGGATGAACATCGAGGTGGAGGTGCTTCGCGGCCAAGTCTTCTCCTCCTGCAA
GGGCCCTCCGCGGTCGTTGCCATGCCGCCATCAACATCATCCACAAAATTGCTAACGAAAACCTAGAAAGCAGA------
--------------------------
>SNPs
------S-------------S------S-------S------------------S-------S-----------------
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--------SSSSSSSSSS------------------------------------------S-------------------
---S----S---------------------S-S-------S---------------------------S-----------
-------------------------------------------------------S------------------------
-------------SS-------------SSSSSSS---------------------------------------S-----
-------------------S-S-------------S-------------------------S------SSSSSSSSSSSS
SSSSSSSSSSSS---------------------------S-----S--------------------S-------------
----------------------S--------S-S------------------------SS--------------------
-------------------------S-----------S-------------------SS-------S-------SS----
--------------------------S---S---S--S-------------S-SS-SSSSS--S--S----S--------
--S---------S-----SSSSSSSSSSSSS-------------------------------------------------
--------------------------------------S----S------------------------------------
----------------SSS-S-S----S---------------SSS-----------S------------------SSS-
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-----------------------------S--------------S-----S-------S-----SS--------------
--------SSSSSS---------------------------------------------S--SSSS--------------
------------------SSSSSSSSSSSSS--------------------------S--------------------S-
-------------------------------------S--------------------------------------S---
---------------------------S----------------------S-----------------------------
----------S----------------------------S-----S------SSS--------------------SSS--
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--------S-----------------------------------------------------------------------
--------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSS----------------
--SSSSS-----------------------------------------------------------------S-------
---------S---------S------------------------------------------------------------
---------S-------------S-------------------------------------S--SS---S----------
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--------SSS--SS-S---S----S---SS-S-----------------------------------------------
----------------------------S------------------S----S-------S-------------SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_564
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----------------------------------------------------------------AACCTGGTCAGTTAGT
GGCG----------------------------------------------------------------------------
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>reverse_1891
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--------------------------------------------------TCGCCTGCATGTCCAAGATT----------
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