>input_sequence_87151
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--------------------------------------ATGGCGGCGACCGCGACGACGTTGATGAGGATGGTGCTGCTG
GTGGTGCTCTTGGTGCAGATGCTCAACGTCATGACC---GTCTCGGCGAGGACGTTGAAGGGGGACGCCT---GGCTCAA
GGACGGCATCGGGATGGTGATGGAGATGCTCGGCGACCTGAAATCAGGCTCCAGCCCTCCCACGCACTGCTGCTAA----
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>chr2B_1_TraesCS2B01G294300
CAGAAACCTGCACTAACGTAAAGGAATGCGTGCTTTTGGATTCTGAATTCGTTCGGGTCAAAAGCAAGAAC----ACGAA
TATTATTTGTTCAACGAGAAGCTGAAATTCCTCGTGTTGGTGTACAT-GGGTTGGTCCTGGTCGCGAAAGGGGGGAGGCA
GGGAGAACTTGCATACAGACACGCATCGTCCTTGTTTATGTCGCCAACATGAACAATGAACAATCTATCGTGTTCACTGT
CGTACTACTACTGCTACTTAGTCAAGAAATACTGTGGCTCCGGTGGACCAAAAGGAGTA--------------TTATAGA
GTTCGAGTCAGAAAGGATT-------------------------------------------------------------
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----------------------------------------TATCTGTTGGTAGCTCTTGCCATGCATGGGCGGGTTGAGG
TAAACGAACTGATGTCTTGTCCATGAGAAAGATTGACCGTACAGTGTTGACGTCATCAAAGACCAAGACTACTCGTCGGT
TGCTTTAGGTAAATCAACGGTGCTGAACGGT------------GTCCAAAGGTCAAAGGGCCGGAACCTGTCCAACACGA
AAAATACGAGGCGGGGTTGGGAGATCGGAAGCAGTGACCCATTCTACACGGTCGCGCAAAGCAACACACGTATNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAGCTC-------------TCACAAGCCCT
GCTGAACCTCGGAACCTGAAGCTACTGAACACGAAGCAAGCAAGGCAATCGTTCTCCCCC------CTAGATCAGAACCT
GCTGT----CTCCCGTCTGCACT---GCAACAACAGCGATGGCGGCGACCGCGACGACGTTGATGAGGATGGTGCTGCTG
GTGGTGCTCTTGGTGCAGATGCTCAACGTCATGACC---GTCTCGGCGAGGACGTTGAAGGGGGACGCCT---GGCTCAA
GGACGGCATCGGGATGGTGATGGAGATGCTCGGCGACCTGAAATCAGGCTCCAGCCCTCCCACGCACTGCTGCTAATCGA
ACCGATCAAGCA--------------------GACAGTTTTCCTTCGGTTAGAAGATGTAAAGATGCGAGGCGCTCTTTT
CCTTTTCTTTTGCCTCTTTGCTGTAGAGGGGTATAGATAGATAGGATCATTCTTTCGTTGTAGAC-ATCAACTGGCCATT
CAACAAAGGTCTAACTGTAACTATGT---TATTTGAGCACAAAATATGTTCATTCTTCCAAGCAAATCGGTGGCAGTGTG
TGTATGAATTGTCTCTGGTCTTAAATGTTTCGACCGATTTC---------------------------------------
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-------------------------------AGAGAAGAGCTTTTGCATCCCCCAAAAAACGAAAAAAAAAAGAAGAGAG
AATAGCTCTTGTGAGTTATTCCTCTTGTGCCT------------------------------------------------
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------------------------------------------------------------------------------TT
TATTTATGTCCACTTCTTTCTTTCAGAAAATATTGCTTTTCGAATGCAATGTCGACAAGCCTTCGAGTTTTACACAACTT
ATTTATATTAGATAAAAAGGAAAAAATACGAACAAAT--AGACTCAAATGATCGTACACGAAATAC-TTTACGAGTCTAA
TTACAAACCGACCACAAAATTTGACCCC-----TGCGGCTGCGGGGCCGGTTGTTGGTCTCATG--A------TGGAACC
GAGACTGCTGACCAATTAAACTGGAGGTGCCGAAACTGGTGTGGTCAAATTAACGCACAAGTTGGAACACGTCCGCGGGA
GAAGAGAAGCCGCTGCATGGTAGGTGTAGCACGTAAAAGGCT------------------------GGTCCGAACGGGAG
ATTTCTACACGGCCGGCCGGTGGGTCGGGGT---------CTTGTGTTGGGCAGC-GGTGCAGCCAGAGGAAACAGCGCG
CGACACCTGCCGCTCCACTGTCGGTTCTTCACGCCTTTCTTCTGCTTGATGGCGGCTCTTCACACTTGTCATCGAGTCAG
GGGTCTCATGCGATTCACCGGCGTCCT--------TCGTGTGATGTTCCCTCCCCGACAAACTTCACGCGCCGACGAAAG
CGTTCACGGTGCTCGTTTCTCATGCACCGTACATTTTCGGCCGATACCAATGGTAATTTTGTAGGTTGACCCAC
>chr2A_1
CAGAAACCTGCACTAACGTAAAGGAATGCGTGCTTTTGAATTCTGAATTCGTTCGGGTCAAACGCAAGAAC----ACGAA
TATTATTTGTTCAACGAGAAGCTGAAATTCCTCGTGTTGGTGTACAT-GGGTTGGTCCTGGTCGTGAAAGGGGGGAGGCA
GGGAAAACTTGCATACAGACACGCATCGTCCTTGTTAATGTCGCCAAC-------ATGAACAATCTATCGTGTTCACTGT
CGTACTACCACTGCTACTTGGTCAAGAAATACTGTAGC--CGTTGGACCAAATGTATCGTGTATCTTAATGTCTTATAGA
GTTCGAGTCAGAAAGGATGTACTCTGTTTTTATTTACTCTGCATATTAGGTTTGACTGAAGTCAAACTTCGTAAAGTTTA
ATCAAGTTTATGGAAAAAAATACAAACATTTACCCTAACAAATCCATATGACGTGAAAGTACATTCAATAATGAATCTAA
TGATATTAATTTGTTATTATATATGTTAATATTTTTGTTTATAAACTTTGCAAAGTTTACAAAGTTTGACCTTGAGCAAA
GCTAATACGTGGATTAAATAAATAATAAAAACAGGGGCAATATATGTTGGTAGCTATTGCCATGGGTTGGGTTGAATTAA
GTAACTAACTGATGTCTTGTCCATGGGAAAGATTGACCGTACAGTGTTGACGTCATCAA-GACCAAGACTACTCGTCGGT
TGCTTTAGGTAAATCAACGGTGCTGACCGTCTCTAAGGTCTGTGTCGACGGGTCAAAGGGCCGGAACCTGTCCAACACGA
AAAATACGAGGTGGGGTGGGGAGATCGGAAGCAGTGACCCATTCTACACGGCCGGG--------CACACGTATGCGCATG
CATGTGTGTGCACCTACCACCTACGTGCACCTACCCCCTCTCACGGTCTCACCTCTATATAAATCGAGACACACCATGCA
AATCAACCCATCTCCATTC--AGCAGAAACAAACCAAA------------------------------------------
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------------------------------------------------CCAAGCTC-------------TCACAAGCTCC
GCTGAACCTCGGAACCTGAAGCTACTGAACACGAAGCAAGCAAGGCAATCGTTCTCCCCC------CTAGATCAGAACCT
GCTGT----CTCCCGTCTGCACA---GTAACAACAGCGATGGCGGCGACCGCGGCGGCGTTGATGAGGATGGTGCTGCTG
GTGGTGCTCTTGGTGCAGATGCTCAGCGTCATGGCC---GTCTCGGCGAGGACGTTGAAGGGGGACGCCT---GGCTCAC
GGACGGCATCGGGATGGTGATGGAGATGTTCGGCGACCTGAAATCAGGGTCCAGCCCTCCCACGCACTGCTGCTAAGCGA
ACCGATCAAGCA--------------------GACAGTTTTTCTTCGGTTAGAAGATGTAAAGATGCGAGGCTCTCTTTT
----TCTTTTTGCCTCTTTGTTGTAGAGGAGTATATATAGATAGGATCATTCTTTCGTTGTAGAG-ATCAACTGGCCATT
CAACAAAGGTCTAACTGTAACTATGTTACTATTTGAGTACAAAATTTGTTCATTCTTTCAAGCAA-TCGGTGGCA--GTG
TGTATGGATTGTCTCTGGCCTTAAATGTTTCGACTGATTTC---------------------------------------
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-------------------------------AAAGAATGGCTTTTGCGTCCCCACAACAACAACAA--------------
AATAGCTTTTGCGAGTTATTACTCTTTGCATTTTATTTACGGAAATGATAAACCCCGTTCGGATTTTAAGCATGACAACC
CGAACATTTCTCATACTAACTTTAGTTCACGCAAGATTGGCAAACATGATAATTTTCTGACAAAAAACAGACTGGGACAA
AGTTGTCATTTTTTTAACACAGTACAGACGCAAGCGCTCATATAAACGCGCATACACTCACCCCCTATGAACGCATACAC
ACACCCTACCCCTATGAGCACCTCCGAAAGACTGAGCCAGTATATCATCTTGAAATTTACGAAGTCATCGTAGGCACCCC
CACGTCAACTAAAGTTGACGTGAAAAAACGTTAGAGATGGCATGCTTAAAATCTGAACGTTTGAGATTTACCGGGGTCTT
TTTTTATGTCCA---CTTTCTTTCAGAGAACATCGCATTTCAAATA----------------------TTTATAAATTTT
ATTTAGAT------AAAAA-GAGAAATATGAACAAATATAGACTCAAATGATCATACACGAAATACTTTTACGAGTCTAA
----AAACCGACCACAAAATTTGACCCGTGCCGTGCGGCTGCGGGGCCGGTTGTTGGTCTGGTCTCATATATGTGGAACC
GAGACTGCTGACCAATTAAACTCGAGCTGCCGAAGCTGGTGTGGTCAAATTTTGTGGTCCGAA------------CGGGA
GAGGAGAGGCCGCTGCATGGTAGGTGTAGCACGTAAAAGGCT------------------------GGTCCGAACGGGAG
ATTTCTACACGGTCGGCCGGTCGGTCGGGGTTTGCAGCGTCTTGTGTTGGGCAGC-GGTGCAGGCAGAGGAAACAGCGCG
CGACACCTGCCGCTCCACTGTCGGTTCTTCACGCCTTTCTTCTGCTT---------------------------------
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>chr1B_1
CAGAAACCTGCACTAACGTAAAGGAATGCATGCTTTTGAACCCTGAA----TTCAGGTCAAACGCAACAACACGTACGAA
TGTTGTTTGTTCGACAGGAAAC-----------------------AT-GTGCTGGTCCTGGTCGTAG-------------
--------------------------CGTCCTTGTTAATGTAGCGAAC-------GGGAACGGTTCATCCATCACTTGCC
G-------------TACTTAGTCAAGAAATAGCTCTTCTGAACTGGACCAAATGTATCCTGTG-----------TATAGA
ATTCGAATCAGAATACATATACAAGAGAAAGATTGTTAACCGA-------------------------------------
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-----------------TGTCCATGAGAAAGATTGACCGTGCAGTGTGGACGTCATCT-------AGACTACTGGTCAGT
TGTTGTAGGCAAATCAACGGTGCTT----------AGGTCTCCGTCCAATGGTCAAAGGGTTGGAACGCCAAAAGTAGGA
--------------GGTGGGGAGATCGGAAGCAGTCACCCATTCTACACGGCCGGG------------------------
------------------------------------------------------CTATATAAACCGAGACCCATCGTGCA
AATCTACCCATCTCCATTTCTAGCAGAAACGA------------------------------------------------
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----------------------------------------------------------------AGCAGCAACAAGACCT
GCTGGAGCTCGTAACCTG-AGCTACTAAGCACGAAGCAAGGCAATCCTT-----TCCATC------CTAGATCAAAATCT
GCTGTACGTCTCCCGTCTGCAGCAGCGCAACGACAGCGATGGCGGCG------------TTGATGAAGACGTTGCTGCTG
GTCGTCTTCTTGGTGCACATGTTCAACGTCATTGCGCCTGTCTCGGCGAGGGCGTTGAAGGGCGACGCCTCCTGGCTCAA
GGACGGCATCGGGATGGTGGTGGAGATGCTCGGCGACCTGAAATCAGGGTCCAGCCCTCCCACGCACTGCTGCT-AGCTA
ATTGATCAAGCAACACCATGCAATCACCTCCTCACAGTTTTTCTTCGGTTACAAGATGTAAAGATGCGAGGCT--CTGTT
----TTCTTTTGCCTCTTTGCTGTACAGGTC----TATAGCTAGGATCATTCTTTCGTTTTAGAGAATCAACTGGCTATT
CAAGGAAGGTCTAACCTTAACCATGTCT---TTTGAATACAAAATTTGTTCGTGCTTTCAAGCAA---------------
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>chr2D_2
-AGAAACCTGCACTAACGTAAAGGAATGCGTGCTTTTGAATCCTGAATTCGTTCGGGTCAAACGCAAGAAC----ACGAA
TATTATTTGTTCAACGAGAAGCTGAAATTCCTCGTGTTCATGTACATGGGTTTGGTCCTGGTCGTGAAAGGGAGGAGGCA
GGGAAAACTTGCATACAGACACGCATCGTCCTT--TTATGTGGCCAACATGAACAATGAACAATCTATCGTGTTCACTGT
CGTACTACTACTGCTACTTAGTCAAGAAATACTGTGGCTCCGGTGGACCGAAAGGAG-----------------------
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----------------------------------------TATCTGTTGGTAGCTCTTGCCATGCATGGGCGGGTTGAGG
TAAACGAACTGATGTCTTGTCCATGAGAAAGATTGACCGT-CAGTGTTGACGTCATCAAAGACCAAGACTACTCGTCGGT
TGCTTTAGGTAAATCAACGGTG----------------------TCGAAAGGTCAAAGGGCCGGAACCTGTCCAACACGA
AAAATACGAGGTGGGGTTGGGAGATCGGAAGCAGTGACCCATTCTACACGGTCGCGCAAAGCAACACACGTATGCGCATG
CATGTGTGTGCACCTACTACCTACGTGCACCTACCCCCC-------TCTCACCTCTATATAAACCCAGACCCACCATGCA
AATCAACCCATCTCCATTC--AGCAGAAACAAACCAAA------------------------------------------
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------------------------------------------------CCAAACCAAAGATCTCAGAAGTCAGAAGCCCT
GCTGAACCTCGGAACCTGAAGCTACGAAACACCAAGCAAGGCAAATCTT-----TTCTCCCCCTAGCTAGATCAAAACCT
TCTGT----CTCCCGTCTGCACA---GCCACAACAGCGATGGCGGCGACCGCGACGACATTGATGAGGATGGTGCTGCTG
GTGGTGCTCTTGGTGCAGATGCTGAACGTCATGGCC---GTCTCGGCGAGGACTTTGAAGGGGGGCGCCT---GGCTCAA
GGACGGCATCGGGATGGTGATGGAGATGCTCGGCGACCTGAAATCAGGCTCCAGCCCTCCCACGCACTGCTGCTAATCGA
ACCGATCAAGCA--------------------CACAGTTTTTCTTCGGTTAGAAGATGTAAAGATGCGAGGCTCTCTTTT
----TCTTTTTGCCTCTTTGCTGTAGAGGGGTATAGATAGATAGGATCATTCTTTCGTTG--GAG-ATCAACTGGCCACT
CGACACAGGTCTAACTGTAACCATGT---TATTTGAGTACAAAATTTGTTCATTCTTTCAAGCAA-TCGATGACAGTATG
TGTATGAATTGTCTCTGGTCTTAGATGTTTCGACCGATTTCAAAAGTATGGGAGCGTCTAAATATCAGTTAACTGAAAAA
ATGATCGCATCAGTCACTTTGTTTCTATTCGTCGGATCAAAAACTGTCCGCACTTCGTCTTCTTCCTCCCCAGATTCGGT
CGACCACCTGTGCAACCGCCGGCCCTACCGTGTCCCATCCGCCTGCCTCCACCACCCGGGGACGGCGGGCGCAGTCGCGC
ACCGCCTCGCCGCCCCGCCCTCCCCGCATCGTTGTTGCTGACCGCCGCCCCGGCCATTCCTCTAAGCTCCGCAGCAATAG
AGAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCACACCCCTAAAATAGATAATGGGGCAAGGCTTCCCCCTAAGATAGATGGTGGGGCAATGA
CTTCTCCAGCAAGGTTTCTTCTTCTCCAGTGGGATTGGAAGGAAGAAAGAAAGAAAGGAGATGACTGACTCAAGAAAAAA
TTTCAAGTACCTGAGAAATAGCAAAACCACAAAAGAATGGCTTTTGTGTTCCCCAATAAAAATT----------------
--TAGCTTTTGCGAGTTATGCCTCTTTGCCTTTTATTTA-----------------------------------------
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------TGTGCA---CTTTATTTCAGAAAATATAGCTTTTCGAATACAATGGCGATAGGCCTTCGACTCTTACAAAATTT
GTTTAGAT------AAAAAAGAGAAATATGAACAAATTTAGACTCAAATGATCATAGACGAAATAC-TTTACGAGTCTAA
----AAACCGACCACAAAATTTGACCCC-----TGCGGCTGCGGGGCCGGTTGTTGGTCTCATGTCA------TGGAACC
GAGACTGCTGACCAATTAAACGGGAGCTGCCGAAACTGGTGTGGTCAAATTAACGCACAAGTTGGAACACGTCCGGGGAC
CGGGAGAAGCCGCTGCCTGGTAGGTGTAGCACGTTAAAGGCTGGTCCGACCTCAGAAAAAAAGGCTGGTCCGAACGGGAG
ATTTCTACAGGGTCGGCCGGTGGGTCGGGATTTCCT-CGTCTTGTGTTGGGCAGCGGGTGCAGGCAGAGGAAACAGCGCG
CGACACCTGCCGCTCCACTGTCGGTTCTTCACGCCTTTCTTCTGCTTGACGGCGGCTCTTCACACTTGCCATCGAATCAG
GGGTCTCATGTGATTCACCACCGTCCTTCGTGTCATCGTGTGATGTTCCCTCCCCGACAAACTTCACGCGCCGACGAAAG
CGTTCACGGTGCTCGTTTCTCATGCACCGTACATTTTCGGCCGATGCCAATGGTAAATTTGTAGGTTGATCCA-
>SNPs
--------------------------------------S-----------------------S-----------------
----------------------------------------------------------------S---------------
----S---------------------------------------------------------------------------
---------------------------------------------------------SS---------------------
------------------S-------------------------------------------------------------
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--------------------------S--SS-------------------------------------------------
-----------S-------------------------------------------------------------SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------
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----------------------S---------------------------------------------------------
---------------------------------S----------------------------------------------
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-----------------------------------------S------------------------------S-------
SSSS------------------------------------------------------------S---------------
-------------------------------------S-------S-----------S-------S--------------
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--------------------------------S----SS--------S-------------S-S--SSSSSSSSSSSSSS
-------S---S--------------SSS-S-------------------------------------------------
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-S----------SSS------------------S-----------S-----S---S-S--------S-------S--S--
-----S--SSSSSS----SSS-S-----S------------------------S--------------------------
SSSS----------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
--S-----------------------------------------------------------------------------
------------S--------------------------------------------------S----------------
-------------------------------------------------S------------------S------S----
----------S--------SS-----------------------------------------------------------
---------------------------------------------S----------S------------S---S
>forward_751
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-----------AATCAACGGTGCTGAACGGT-------------------------------------------------
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>reverse_3676
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---------------------------------------------------------------------------GTCAG
GGGTCTCATGCGATT-----------------------------------------------------------------
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