>input_sequence_87119
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-----------------------------------------------------------------ATGTTCATATTGGAG
CTGGGCATCTGGCTGCTGCCCTTCACGCTGCTGCTGGCGCCGGCGCGGCGGCTCGTGCACCTCCTCCGGGAGCTGCAGCG
GATCCTCCTCGTCGTCGCCTGCGGCCGCCGCACGCCCGCGGCCTTCGGGGAGGTCTGGAGCCGCCTCGACCGCCTCGACT
CCGCCACCGTCATCGCCTGA------------------------------------------------------------
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>chr4A_1_TraesCS4A01G383700
TATTATTGCGTGGCTGCTATGTACTACTAGTACGTGACAGTGACATGTACACGAGACGGGATACTCGTCCAGACGTTCAC
CTGCCGGCGTTGCCCGTGATACATTAGATACGTACCATGCAAAAAAAAAACATTAGATACGTATACGTAGATTTTAGATA
TTTTTGACCGAGGCGAAAATGAAAAACAAAAAATAGT-CGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGG
CGGGAATACTTACCACTATACTACAACGACTTTGATGCAAAATTGTTTTGACAGGCTATCCATATCCTTGTTCATGCGAA
------------------------------------------CCTGTCAGTTCAGTTGAGTGGTCGGCAGCCAATGGGTC
AC-----ATCCAAGCTAGGTGGCGGGCGAGGGGCGACCCAACCGGGCCTCCGGGTCGACCCGGGTGGAGCCTACGGGACC
ACAGGAAACGTCGGCGGGACATAAATCGGA-------------GACCCAGAACATGTTACATCATGAAGTATATCCT-GT
---ACTGCAGCTACGTCCGGGCCACTCCGCTCG---TACGCCCACGCGAACCACGCCACGCTTCCAGGTCGGTCGGCCAT
GTGTACGTACCCTCCAGATTT-------GAGAGATTAATTCCA---CGGTACCACG-----------TCGCATCACAGCT
GCTGGCCTGCTACCGGGCCGATCGACGGAGAGCGGTGGTTGCATATACAAATCCGTTCAACGATGCGTGCTGCGTGGGAC
GTGGAGACCTGCCGTGTGGCCAACTAGCAGCCATGGCCAGCAGCATGCCAATCAGTCCATCGGCGCATTAGCCAGGCTAC
GGAGTTGGTTAACACTACTAGTAG-TATCTTATAAGCTACTACCGCTCCGGCGCGACGAGCCATCAACCATCCGTCCATC
ATCGCGGCGAATCAAAGCGAATTATTGGCTGTTAGTTGGGAACCACCGGAGGATTAGTTAGCAGCTAGCTGCTCCCGTTG
ATCGTGCCAAGAAGAAGCAGAGGAGAAGTG---------------GGAGGAGGAGGAGATCGACGATGTTCATATTGGAG
CTGGGCATCTGGCTGCTGCCCTTCACGCTGCTGCTGGCGCCGGCGCGGCGGCTCGTGCACCTCCTCCGGGAGCTGCAGCG
GATCCTCCTCGTCGTCGCCTGCGGCCGCCGCACGCCCGCGGCCTTCGGGGAGGTCTGGAGCCGCCTCGACCGCCTCGACT
CCGCCACCGTCATCGCCTGATCGGTCCACCACAGCCCGTCCACCATGCGTCGCTCTGGCTCGGCTCCATCCTGTAATTAA
CCTCCTGCTGTTCTTCCTCTTGTATACTCAGCGCCTCCTAGTTTTTTTTCTGGCGCGTCCTAGTTGTGTGTAGCTGTTCC
TCAAGAAAGGATCAAAGGACCGGCGCTACCTCTTTTCTTTTGAGCTTTTGAGCGA----ACCCGCTCTCTGTTCCCCCTT
TTGATTTTGACCTCATCTTCTG--TTTTCCTCTGAGTATGCATCATGCATGCCTCTGTAATTGCGTTGAGGAGATGATCG
ATGAACAGGGATCTCATCTGAGCGATGATCCTGTTTTCATATGTTTATAGAGAAAGAA---AAAAG----AAAGAAAGAA
AATCCATTAATTTTCAGAGTATTATGATGAATCATGCGAGATTCGGGGTCACGATTGTCGAGTGCATGATGACATGACGT
GAATCGCTCTTGATGTGCTAGCCCGCCGGTTTCCTGTCGTTGTCGTACACTCAATCAAGCACGCCACTACTACTAAATTT
CTTCTGCTATTCACCGGATAGCTAAGTATTACTTACCTCTTGTTTCATGATAAGATCAAACACAAACTTCCCATG-----
-------------------------ATTTATCATTCATAAAGTAT-----------------------------------
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-----GTACATATCATCATCGTTGCACACTGAAGAAGAGAAAAAGGCATAAATCATCGTACATATGCTGGCAGCAATTTA
---GAATGTACTAAAGGTTATCCACACTGAAAGGACTGGATACTGGATAAGTAAAAAAAAAAAAAGGCCATGGATAAGAT
GGACGATTTTGCTAACGCGCGTGTGGACAAGATGTACACCTGTCCAAAATTTGTCTTTTTGTACATGAGAACAACATGTA
TATGTGACTTCTCAAAATTTTTGTCTAATTGTACATGAGTACAAAATGTATACGTGAATTTTTCAAAATTTGGATTTATG
TACATGAATACA---ACTGACGTGTTTGGTTGCCCGCATGAATTTA-CCTACATTGCATGTGTGTCTCAG
>chr7A_145
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----------------------------------------------------------------ACGTAGATTTTAGATA
TTTTTGACCGCCGCGAAAACGAGAAGAAAAAAAAGGAGCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGG
CGGGAATACTTACCACTATACTACAACGACTTGGGTGCAAAACATATCTAACTGTTCACTTATATCCATATTCATGCGAA
------------------------------------------CCTGTCAGTTTGGTTGAGTGGTCGGCAGCCAGTGGGTC
AC-----ATCCAAGCTAGGTGGCA-------GGCGACCCAGCCGGGCCTCTGGGTGGAGCCTACGT-----------ACG
ACAGGAAACGTCGGGGAGACATAAATCGGACACCCGAT----CGACCCAGAACATGTTACATCATGGAGTATATCCCAGT
---ACTGCAGCTACGTCCGGGCCATGT-----------------------------------------------------
------GTATCCTCCAGATTT-------GAGAGATTAATTCCA---CGGTACCACGTCGCGCCATGCTCGCATCACAGCT
GCTGGCCTGCCACCGGGCCGATCGACTGAGAGCGGTGGTTGCATATACAAATCCGTTCAACGATGCGTGCTGCGTGGGAC
GTGGAGACCTGGCGTGTGGCCAACTAGC---CACGGCCAGCGACATGCCAATCAATCTATCGGCGCATTAGCCAGGCTAC
GGAGTTGGTTAACACTGCTAG----TATCTTATAAG---CTACCGCTCCGGCGCAACGGGCCATCCATCA----------
ATCGCGGCGAATCAAAGCGAATTATTGGCTGTTGGTTGGGAACCACCGGAGGATTAGTTAGCCGC-AGCTGCTCCCGTTG
ATCGTGCCAAGGAGAAGCAGAGGAGGAGGCGAAGGGGAAAGAGGAGGAGGAGGAGGAGATCGAAGATGTTCGTATTGGAG
CTGGGCGTCTGGCTGCTGCCCTTCACGCTGCTGCTGGCGCCGGCGCGGCGGCTCGTGCACCTCGTGCGGGAGCTGCAGCG
GATCCTCCTCGTCGTCGCCTGCGGCCGCCGCACGCCCGCCGCCTTCGGGGAGGTCTGGAGCCGCCTCGACCGCCTCGACT
CCGCCACCGTCATCGCCTGATCGGTCCTCCACCGATCCT------TGCGTCGCTATGGCTCTGCTCCACCGTGTAATTAA
CCTCCTGCGTTTCTTCCTCTTGTAAATTCCGCGCGTCCTAGTTTTTTTTCTGGCGCGTCCTAGTTGTGCGTAGCTGTTCT
TCAAGAAAGGAT--------CGATGCTACCTCTTTTCTTTTGATTGAGCTTTTGAACAGACCAGCTCTCTGTTTTCCTTT
TTGATTTTGACTTCCTCTTCTGTCTTTTCCTCTGAATATGCATCAGACATGCCATTGTAATTGCGTTGAGGAGATGATCG
ATGAACAGGGGTCTCATCTGAGCGATGATCTTGTTTTAAGATGTTTATATACAGAGAAAAAAAACAGAAAAAACAAAGAA
AATCCATTACTTTTCGGATTATTATGATGAATCGTGCGAGATTCGGGGTCACGATTGTCGCGTGCATGATGACATGACGT
GAATCGCTCTTGATGTGCTAGCCCGCCCGTTTCCTGTCGTTGTCCTACACTCAATCAAGCACGCCACT---ACTAAATTT
CTTCTCCTATTCACCGGATAGCTAAGTATTACTTACCTCTTGTTTCATGATAAGATCGAACACGAACTTCCCAAGAGCTA
GAAAGTACT-------GTATAACTTATTTATCATTCCAAAAAAGTATGCAGTATATATC---------------------
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-----------ATCATCATCGTTGCACACTGAAGAAGA--AAAAGGCATAAATCATCGTACATATGCTGGCTGGAATTTA
CTAGAATG---TAAAGGTTATCCACACTGAAAGGACTGGATACTGGATAAGTC---AAAAAAAAAAGGCATGGATAAGAT
GCACGTTTTTGCTATCGCGCGTGTGGACAAGATGTACACTTGTCCAAATTTTGTCTTTTTGTACATGAGAACAACATGTA
TATTTGACGTCTCCAAAATTTTGTCTAATTGTCCATGAGTAAAAAATGTTTACGTGACTTTTTCAAAATTTGGATTTATG
TACATGAATACAACGACTGACGTGTTTGGTTGCCCGCATCAATTTTGCCTATATTGCATGTGTGTCTCAG
>chr7D_188
AAAAAAAAC-----------------------------------------------------------------------
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------------------------------------T-CGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGG
CGGGAATACTTACCACTATACTACAACGACTTTGATGCAAAACGAGTTTGACAGCCCTTTTATATCCTAGTTCAAAAACA
GGAGTACTATTGGTTAGCACGTCGTGCTACAGATCTCTCTATCCTGTCAGCTCAGTTGAGTGGTCGGCAGCCAGTGGGTC
ACATCACATCCAAGCTAGGTGGCG-------GGCGACCCAGCCGGGCCTCTGGGTCGATCCGGGTGGAGCCTACGGGACG
ACAGGAAACGCCGGCGAGACATAAATCGGACACCCGATCGACCGATCCACAACATGTTGCATCATGGAGTATACCCT-GT
ACGACTGCAGCTACGTCCGGGCCACTCCGCTTGCAATACGCCCACGCGAACCACGCTA----------------GGCCAT
GTGTAGCTGCCAGATTGATCGGTCGAGCGAGCGATTAATTCCACCACGGTACCACG-----------TCGCGTCACAGCT
GCTAGCCCGCCACCGGGGCGATGGACTGAGAGCGGTGGTTGCATATACAAATCCGTTCAACGATGCGTGCTGCGTGGGAC
GTGGAGACCTGGCGTGTGGCCAACTAGCAGCCATGGCCAGCAACATGCCAATCAGTCCATCGGCGCATTAGCCAGGCCAC
GGAGTTGGTTAACGCTACTAGTATCTATCTTATAAG---CTACCGCTCCGGCGCAACGAACCATCCATCA----------
ATCGCGGCGAATCAAAGCGAATTATTGGCTGTTGGTTGGGAACCACCGGAGGATTAGTTAGCAGCTAGCTGCTCCCGTTG
ATCGTGCCAAGGAGAAGCAGAGGAGG------------------------AGGAGGAGACCGACGATGTTCATATTGGAG
CTGGGCATCTGGCTGTTGCCCTTCACGCTGCTGCTGGCGCCGGCGCGGCGGCTGGTGCACCTCGTGCGCGAGCTGCAGCG
GATCCTCCTCGTCGTCGCCTGCGGCCGCCGCACGCCGGCCGCCTTCGGCGAGGTCTGGAGCCGCCTCGACCGCCTCGACT
CCGCCACCGTCATCGCCTGATCGGTCGGCCACACCCCGCCCACCATGCGTCGCTCTGGCTCGGCTCCATCCTGTAATTAA
CCTCCTGCTGTTCTTCCTCTTGTATATTCTGCGCGTCCTAGTTTTATTTTTGGCGCGTCCTAGTTGTGCGTAACTGTTCT
TCAAGAAAGGATCAAAGGACCGGTGCTACCTCTGTTCTTTTGAGCTTTTGAGCGA----ACCCGCTCTCCGTTTTCCCTT
TTGATTTTGAGTTCCTCTTTTG--CTTTCCTCTGAGTATGCATCATGCATGCCTCTGCAATTGCGTTGAGGAGATGATCC
ATGAGCAGGGATCGCATCTGAGAGATGATCTTGTTTTCAGATGTTTGTTTATAGAGAAAAGAAAAG----AAAGAAAGAA
AATCCATTACTTTTCGGATTATTATGATGAGTCATGCGAGATTCGGGGTCACGATTGTCGCGTGCATGATGACATGACGT
GAATCGCTCTTGATGTGCTAGCCCGCCCGTTTGCTGTCCTTGTCGTACACCCAATCAAAGCACGG--T---ACTAAATTT
CTTATGCTATTCGCCGGATAGCTATGTATTACTTACCTCTTGTTTCATGATAAGATCAAACACGAACAAGAGCATGTACG
GATAAAACCATAGAAAGTATAACTTATATATCATTCTAAAAAAGTACTACTATATAGTACTCCCTCTGTCCCAAAATACT
TGTCGGAGGAATGGATGTATCTAAACGTATTTTAGTTTTAGATACATTCGGTTTTATGCATTTCTCCGACAAATATTTTG
GGACGGAGGGAGTACTCCCTCCTGTTGAGTATATGTATTTACCACGTGTATTCTTGTACTCCAAGTCTTCCTCCTTGTGT
ATAGTTGAGAATATAACTGCCCTATGTACTATATATACATGTGCATACCACGCCGCCGCCGCCGCCTCCCTGGCCGCCAC
GCCCCTCCCCTCCCTCCTAACCCCGAGCCGCCGCTCACCCTCTACCCACAGCCGCCGCCCACCCTAACCCTAAACCCTAC
CCGAGCCCGAGCGGCCCCTCTCTCCGCGCCGCCTCCTCCCGATCCACCCCCCTCGCGCCGCTGCCCTTCCCCTGTGCCAC
CCCTCCTCTCTTCCCGCACCGCCGAACCACCTCGCAGCCATGTCGGCCAGGTCATCCTCGTCCAGTCCGAGCAACCCGTT
CGACTCCTCCTACGGAACCGAGCCCGAAGAGCCCCTTGCCGCCGACATCCACAACATCCACCTCACCGATCACGTTCCCA
TCATCCTCTCCCACACCTCCGCCAACTACTATGCCTGGAAAACCTATTTCAACCTTCTCTTCCGTGAGTACAATCTTCGT
GATCATGTGGACGGCCTCTCCAACTTCTTCACCGGCAACCACGACGCCAACTGGCTGGCCATCGACGCCACCCTCATCCG
GTGGTTCTTCCTCACCGTCTCTCCGGACATCTTCCACACTGTCGTTCGCCACGGGGACGATGCCTACACGGTGTGGAGCA
AGATCAACGGCCTCTTCACCGACAACAAGCTTCAACGGATTGTTTTCTTGTAGCAGGAATTTTTTGGGTGTCACCAAAAC
GACTCCACCATCGACGCCTACTGTCTCCGGCTCAAGACCCTCTCCGACGAGCTCAACGACGTCGGGTTCAGGGTGGGAGA
TGAGCTTCTCCTCTCGACACTCACCGCTGGCCTCAAGGAGGACTTCGGCAACGCCGCGTCCAACCTCACCCTCATGGCCA
ACCCTACCTACGAGCGGGCGGTGGCCTATCTTCGTCTTGAGGAGCGGCGGATGAAGCAACTTCGCACCCGCGCCGCCCAC
ACCGCCCTCGCCGCCGGCTTCTCCCACGGCGCTCCTACACCACCATCGGTGCCTCGTCCTCCGGCCGTCCCGCCGCACCC
GCTGCCCCCGCCGGTGCCTCAGCCGCCCCAACCGCCGCGCAACGGCGGGAACGGCGGCAACCATCGCCGTGGCCACGGTG
GTCACCGCCAAGGTGGAGCCGCGTCTACGCCGCCTCGGTCCCCTTCTCCGCATGTTGGGCCGCATGCTGGGCCGGCCTCA
CCAGGCGCTGCCCCGACGCCGCCTCGGTCACCCGACGCTGCGGCCCCGTCTCCGTCTCGGTCCGCCTCCCCCGCGGCTGC
CGTGGACGCTGCGGCGGCCTCGCCGCCGTCTTCTGCTGCACCGGCCATGTCGGATGGGTCAGTCCCTTCTGGAGGTGCAC
CTGCCGCTTCGCCCCCACCCGCGGCTGTTCCCACGGCCGGCCCCGTCACGCGCTCGCGTACAGGCGTTTTCCGCCCGAGC
TCGCGTTACTCTGCGGATGACTACGTCTGCACCGCCTCGACGTCTGCACCGCCTCGACGTCTGCGCCTTCTCCGCTGCCG
TCCTCGGTTCGGGCCGCTCTCCGCGATCCCCTCTGGATGGCCGCGATGCAGGAGGAGTTCGACACTTTGCAGCGGAACCG
GACTTGGCAGCTTGTTCCCCGTCCCCGGCACGCCAACGTGATCACCGGGAAGTGGGTCTTCAAACACAAGCTTCGTCCCG
ATGGCACACTTGACCGCTATAAGGCGCGTTGGGTTGTTCCTGGCTTCCGGCAATGCGCCGGCGTGGACTTCACCGACACC
TTCGTTCCGGTTGTTAAGCCCGGGGCGATCCGCACTGTTTTACAGCTGGCGGTCTCTCGTGCCTGGCCGGTTCATCAGAT
GGACGTCTCCAACGCCTTCCTCCATGGTCATCTTGAGGAGCAGGTCTTCTGTCAGCAGCCCACGGGGTTTGTTGATCCGG
CGTGTCCCGATCCGACGGAGGGGCGTGCGATGCACCCAATCAATACATTGAGAGTTGCATCCTATTCCTCTACACCTAGG
AAGTAGTATATATCATCATCGTTTCACACTGAAGAAGA--AAAAAACATAAATCATCATATATATGCCGGCTGGAATTTA
---GAATG---TAAAGGTTATCCACACTGAAAGGACTGGATACTGGATAAGT-----AAAAAAAAAGGCTTGGATAAGAT
GCACGCTTTTGCTAACCCGCGTGCGGACAAGATGTACACTTGTCCAAAATTTGTCTTTTTGTACATGAGAACAACATGTA
CATGTGACGTCTCCAAAATTTTGTCTAGTTGTACATGAGTAAAAAATGTATACGTGACTTTTTCAAAATTTGGATTTATT
TACAAGAATACA---ACTAACGTGTTTGGTTGCCCACAGCG----A-CCTGCATTGCATTTGTGTCTCAG
>SNPs
S-SS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
----------SS-------S--S--SS------SS---------------------------------------------
------------------------------------------SSSS--------S-S--SS-------------------
-------------------------------------------------------------------------S------
------------------------SSSSSSS---------S---------S-------S--------------------S
----------------S-------------------------------------------------S-------------
-------------------------------S------------------------S-SSSSSSSSSSSSSSSS------
-----S--------------------------------------------------------------------------
----------S---------------S-----------------------------------------------------
-----------S------------------------------S-------------------------------------
-----------------------S------------SSS---------------S----------S-S--SSSSSSSSSS
---------------------------------S----------------------------------------------
-----------S-------------S--SS--------------------------------------------------
---------------------------------------------------------------S-S--------------
---------------------------------------S----------------------------------------
---------------------------S----------------------------------------------------
--------------------------S--S----S---------------------------------S----------S
-----------------------S-------------------------------------------------SS-----
-----------S--S-----------------------------------------------------------------
------------------------------S--------S---------S-S-S--------------------------
---------S-----S--S-----------------------------------------S-------------------
---------------------------S----------------------------------------SSS---------
---------------------------------------------------------------S---------S------
------------------------------------SS---SSS------------------------------------
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--------S-----------------------------SS-------------------------------S-S------
--------SSS-----------------------------------------SSSS---------S-S------------
-S---S---------------------------------S----------------------------------------
--------S----S---S-----------------------S---------------S----------------------
---------------------------------------S------------------------------
>forward_25
-----TTGCGTGGCTGCTATGTACT-------------------------------------------------------
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>reverse_4326
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-----ATTTTGCTAACGCGCGTGTG-------------------------------------------------------
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