>input_sequence_87114
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------------------ATGGCCTCCAACTCCAAGATCTTCCGCGCCGTCGTCATCGCGGCCGTCGCCGCGTCTTCCTT
CGCCGGGGTCGCTCTGGCCGCCGACGAGCCCGCGCCGAGCCCGACGTCCGGTGCCGCAGCTGTCTCCTCGTCGCTCCTCG
CCGCCGTGCTCTGCCCGGCCGTGGCCTTCCTCGTTGGCAGCATGCGCCACTGA---------------------------
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>chr3A_1_TraesCS3A01G252400
GGGGTGTTTGTTTTCAGGGATTTTTTTGTGTAGGACTAGAAAAAAAATCCTTTTTAAAGATTTTTTTACTAAACGGGATA
GATTTTTTAAGGGCTAAACTAGTCATTTGGGATTAAATGCAAAAGACTATTAAGGAGAGTCTTTTTCGGACTTTTTGGGA
CTTTTTCAACAATGCTTCTCCATGCACTTATTAGTCCGCCACCCCATAATGTTGTTTGATTATTATTATTTTATATACTA
AGGGCAACATGGTTATTTAATAATCTCTAGGAAAGGACTATGGACTTTTTAGTTTTTGAAAACAAATAGGAAGTAACTTT
TTAGGACTAAGGACTTTTTAGTTGGGACTAGAAAAAATTTTAGAACCAGAGAACCAAACACCACTGTAGTATGGACGGAT
GCTTGGTCACAAGTAAACTAAACCGTGGCTTCAAGTAAACCTCTGCGGCGACAGCAACTTGTAAGCTGACGTCC------
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---TGATATGCTCCTCTTTCTTTCTGATGATGGTTCTCCTTCTCCTGACGCGGCGCT-GTCCCGGGATCGACGAATGA-T
TGCGCCGGCTGCTCGCTTCCAGGGCTTGTCACCCGATCAACACATCCGATCCCGATCCGCGGAACATTGCACCGCATTTC
CGCTGTAA-TCTGGGCTTGGGGGCCATGCCGCGCTGCTGTCACGGAAGATTCTCGAGGCGGCTGAGCTCGCCCGTTACTC
CAACTCACTAGTCGCAGAACACAGAGTGCTTTGCTTGCAGTTGCAGCGGGCGGGAGGAGCAAAGGCA-----------CC
TACTCCTACACCCACCAGCCGTTGATCGTGAGCTGTGTGGAGGAGGCC------------AGACTGTAAAATGCAGGCCA
CCGCATTCCCCAGCTCCTCTGTTCTTCATCAGCTATAAGAACGCGCGCTTCGCCCTGATTTCCTCCGGCATTATCTCGCA
CACACTCACTCGCCTCCTCCGCAGTTCTTGCTCGAGCA-----------------------CCGCATCTGCGACATTTTC
TTTCTCGCAGCTAGGATCATGGCCTCCAACTCCAAGATCTTCCGCGCCGTCGTCATCGCGGCCGTCGCCGCGTCTTCCTT
CGCCGGGGTCGCTCTGGCCGCCGACGAGCCCGCGCCGAGCCCGACGTCCGGTGCCGCAGCTGTCTCCTCGTCGCTCCTCG
CCGCCGTGCTCTGCCCGGCCGTGGCCTTCCTCGTTGGCAGCATGCGCCACTGAG--CTGGCCGAGGTCGCAGCTGCCGCG
CGTGTCCACAGGCTCGCTCCATGCCGGATTTCAGGGTGAAGA--TGGCCGCTTTTCTTGCGTCATCTTTGCGCGTTGTTC
GTTTATACTACCTCCTTGATTTGATAGTCTTCCTATGTGTACCC-------------GTCGATGCTGTTAGTGTTTTTTT
TTGAGAAAGTCGATGCTGTTAGTGTCGGCTGTGTTTTTCTTTTCATGTGCTACATAGTTTATGTGTATTGATTCAGATAT
TTGTCAGAATTTGTTCTACTAATCATGCTCTCTGTATTGGTCCCCGTATGGATTTAATCTCTTGCTCACGCTCAGGGACT
TTGTCAATCTCGTGAAG--------------------------------------TTTTTTATGG-CTTCAGAGTTTCAT
AAGAAACGATTATCGACACCTTCTTTTTTCGCATAATTTCTGCACGAAGTTGACCGGTTTTCCATCGGGCGCGCCGGGCA
GCAAAATCATCCACTCAGCAATCCTACGAGGACT-----TGTTTTTCTGCATCCCAACAGACTCCCGACGAGAGTACTCG
ACGGTGATAATCGCCGCGGCAACTTGGGTTCTTCGAGCCGCAGAGCGCGCGCGCGCGCGCAG-CCCTTGCCCGGCCGAGG
TCGCATCGCAACTCGTCGCATGCCGCATCCAGCAGGCAGCAGCGCGCGGCTACAGCTCCTCGTGCGAGTCCACGCGCCCG
TGCCGGCGCTGCAGGTACGTCATGGCGAGGCTGGCGTGCATCGCCGCGCCGTACGGGAGCGCGCCTTCGTCGACGAGGAA
GTGCGGCGAGTGCGCGTCGTGCACCGACCCGGCCGCCTCGTTCCGTATCCCGACGAAGTAGAAGTGGGAGCCCGGCACGG
CCTCGGAGAAGGCCGCGAAGTCCTCGCTCCCCATGCACGGCTCCATGGCGCCCCGGACGCCGCCGGCGCCGAGCATCTCC
GTGGCGACGGCCTCGAAGTGCGCGTGCAGCCCGGCGCTGTTGATGGTCGGGGCCAGCAGGGGCCGCCCGCCGGCG
>chr3B_422
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---------------------ACCGTGGCTTCAAGTAAATCTCTGCGGTGACAGCAGCTTGTAAGCTGACGTCCTGATAA
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----GATATGCTCCTCTTTCTTTCTGATGC---TTCTCCTTCTCATGATGCGGCGCTTGTTCTGGGATCGATGAATGATT
TGCGCTGGCTGCTCGCTTCCAGGACTAGTCACCCGATCAACACATCCAATTCCGATCCGCGCGACATTGCACCGCATTTC
CGCTGTAA-CTTGGGCTTGGG----------CGCTGCTGCCACGAAAGATTCTCGAGGCGGCTGAGCTCGCCCGATACTC
CAACTCACTAGTCGCAGAACGCAGAGTGCTTTGCTTGCAGCTGCAGTGGGCGGGAGGAGCAAAGGCACATTTGCTGGTCC
TACTCCTACACCCACCAGCCGTTGATCGTGAGCTGTCTGGAGGAGGCCGGACGGCCAGCCAGACTGTAAAATGCAGGGCA
CCCCATTCCCCAACTCCTCT---GTTCATCAGCTATAAAAACGCGGGCCTCGTCCTGATTCCCTCCGGCATTATCTCCCA
CACACTCACTCGCCTCCTCCGCAGTTGTTGCTCGAGCAGTTGTAG-----------CACAGCCGCATCTGCGACATTTTC
TTTCTCGCAGCTAGGATCATGGC------CTCCAAGATCTTCCGCGCCGTCGTCATCGCGGCCGTCGCCGCGTCTTCCTT
CGCTGGGGTCGCTCTGGCCGCCGACGAGCCCGCGCCGAGCCCGACGCCCGGTGCCGCAGCTGTCTCCTCGTCGCTTCTCG
CCGCCGTGCTCTGCCCGGCCGTGGCGTTCCTCGTTGGCAGCATGCGCCACTGAG--TTGGCCGAGGTAGCAGCTACCGCG
CGTGTCCACAGGCTCGCTCCATGCCGGATTTCAGGGTGA--A--TGGGCGCTTTTCTTGCGTGATCTTTGCGCCTTG---
-----------CTCCTTGATTTGATAGTCTTCATACGTGTACCC-------------GTCGATGCTGTTAGTTTTTTTTT
TTTCGAAAGTCGATGCTGTTAGTGTTGGTTGTGTTTTTCTTTTCATGTGCTACATAGTTTATGTGTATTGATTCAGATAT
TTGTCAGAATTTGCTCTACTGATCATGTTCTCTGTATTGGTCCCCGTATGGATTTAATCTCTTGCTCACGCTCAGGGACT
TTGTCAATCTCGTGAAG--------------------------------------TTTTTTATGGACTTCAGAGTTTCAT
AAGAAACGATTATCGACACCTTCTTTTCTCGGATCATTTCTGCACGAAGTTAACCAGTTTTTCATCGGGCGCGCTGGGCA
GCAAAATCATCCACTCAGCACTCCTACGAGGACGTTCTCTGTTTTTCTGCATCCCAACAGAACCCCGACGAGAGTACTCG
ACGG-GACAATCGCCGCGGCAACTTGGGTTCTTCGAGCCGCAGAGCGC--GCGCGCGCGCAGCCCCTTGGCCGGCCGAGG
TCGCATCGCAGCTCGTCGCATGCCGCATCCAGCAGGCAGCAGCGCGCGGCTACAGCTCCTCGTGCGAGTCCACGCGCCCG
TGCTGGCGCTGCAGGTACGCCATGGCGAGGCTGGCGTGCATTGCCGCGCCGTAGGGGAGCGCGCCTTCGTCGACGAGGAA
GTGCGGCGAGTGCGCGTCGTGCACCGACCCGGCCGCCTCGTTCCGTATCCCGATGAAGTAGAAGTGGGAGCCCGGCACGG
CCTCGGAGAAGGCGGCGAAGTCCTCGCTCCCCATGCACGGCTCCATGGCGCCCCGGACGCCGCCGGCGCCGAGCATGTCC
GTGGCGACGGCCTCGAAGTGCGCGTGCAGAGCGGGGCTGTTGATGGTCGGGGCCAGCAGGGGCCGCCCGCCGGCG
>chr3D_435
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----------------------------------GTAAACCTCTGCAGTGACAGCAACTTGTAAGCTGACGTCCTGATAT
GATTCTTTTTTTTAGAAAAGGAGGACGACCCCCGGCCTCTGCACCTGGACGATGCATACGGCCATTTTATTAATTATTGA
CACAAGACCTTACAGAGTCATACAACAATAAGCCTAAAGCCACCAAACTAAGCAACATCTGTCGCTATCCCTATTCAGTT
GATGTAGGGGCGCTGAAAGTCTTGGCCTAATACCAAACAGACCTCGCAGCCAAACCTAACATCTAAGACTTGAGGTTCCA
ACCAGGACGCCTGCCGGGTATGGGCATCCATCAGTCTGGCGTGCTTCTCAACCAGGACGCCTGCCGGGTATGCGGCCGCC
GCAGCCACATGCCACCAATCCATCTTCAGAGCTGTACTGCTGCATCAACCTTGCTCGGTCTAACTGCCGCCGACGCCACC
ACGCCGCCAGGCAGCGTCACCCTCCTGCGCGAGTCCTTCTCCGCTCATCAGGCGCCGAATCTCCACTGCGCCACGCCGCC
GAGATCCGCCGTCATCAATGGAGCAGAGGAAACACCGCTCCTCCTCTTGTCCCCTCCAACCAACACTTGCTCCAAAACGA
TGCCCCCATGAGGGAGAACGATACCGAAGGCACCGTCATCGTCCGATCCGGTATACCCAGATCTAGGGTTTCCCCCGGAA
CTTCCCGATCAGGTTGATGTGACCTGCAACGACGATGCCTCCAGAAGGGAATGACGTCTGAGACGCCGCCATCGTCCGCC
AAGACCGCAGTCAGGCGCGATTTTCACCGGAAGCCACGTCTTCCCGACCTCGTGGCTGGCTGGAACCGAGCGGAACCTCG
CCACGAAGACGTATGTCGCCGTCGGTACTCCGGCGTAGATCCGGCATCTCCTCACCGGTCCCTCCACGCGCCGCCGGTCG
GCGGAAGGCCTCCCCGCGGCGGATCCAAACGGGGTGTTGGATCCGCAGTGACCGCCATCACCATCACGACTAGGACAGCC
CACCCCGCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGTCCTAGCCGCCGCC
GTTGGATCGCACGGGAGGAGCCGCCCCCGCCGCCTCAGATGGGATCCGCCGCATCCACCCGCCCAGAAACCTTCGGCACC
GGGCCTGCCGCCACCACGGCCCACGCCGGCTGCAGCGGCGGCAGGAAGGGGCGGCAAGAAGGTGCTGGCGGCGCTAGGGT
TTCGGGGCCCCTGGCGCCGCCTGGGGGGAGGCGACGCGAGGGGGAGGGCACACGTAGTTGATACAAGAAAGATGGTCCTC
ATATGATATGCTCCTCTTTCTTTCTGATGC---TTCTCCGTCTCCTGACGCGGCGTT-GTTCCGGGATCGACGAATGA-T
TGCGCTGTCTGCTTGCTTCCAGGGCTAGTCA-------------------CCCGATCCGCGCGACATTGCACCGCATTTC
CGCTGTAAACTTGGGCTTGGGGGCCATGCTCCGCTGCTGTCACGAAAGATTCTCGAGGCGGCTGAGCTCGCCCGTTACTC
CAACTCACTAGTCGCAGAACGCAGAGTGCTTTGCTTGCAGTTGCAGTGGGCGGGAGGAGCAAAGGCATATCTGCTGGTCC
TACACCCA---CCAGCAGCCGTTGATCGTGAGCTGTCTGGAGGAGGCCGGACGGCGAGCCAGACTGTAAAATGCAGGCCA
CCCCATGCCCCAACTCCTCT---CTTCTTCAGCTATAAGAACGCGCGCCTCGTCCTGATTCCCTCCGGCATCATCTCGCA
CACACTCACTCACCTCCTCCGCAGTTCTTGCTCGAGCAGCTGTAACCACTAACCAACACAGCCGCATCTGCGACATTTTC
TTTCTCGCAGCTAGGATCATGGC------CTCCAAGATCTTCCGCGCCGTCGTCATCGCGGCCGTCGCCGTGTCTTCCTT
CGCCGGGGTCGCTCTGGCCGCCGACGAGCCCGCGCCCAGCCCGACGTCCGGCGCCGCAGCTGTCTCCTCGTCGCTCGTCG
CCGCCGTGCTCTGCCCGGCCGTGGCGTTCCTCGTTGGCAGCATGCGCCACTGAGAGTTGGCCGAGGTCGCAGCCACCGCG
CGTGTCCACAGGCTCGCTCCATGCCGGTTTTCAGGGTGA--AGATGGGCGCTCTTCTTGCATGATCTTTGCGCCTTG---
-----------TTCGTTTTTTTTTTGCGCCTTATACGTTTGTAGTACCTCCTTGATAGTCGATGCAGTT--TTTTTTTTT
TTGCGAAAGTCGATGCTGTTAGGGTTGGCTGTGTTTTTCTTTTCATATGCTACATATA-TATTTGTATTGATTCAGATAT
TTGTCAGAATTTTCTCTACTAATCATGTTCTCTGTATCGGTTCCCGTATGGATTTAATCTCTTGCTCACGCTCAGGGACT
TTGTCAATCTCGTGAAGCCCGTTCCGGGCATCTAATCACGATTTCTTTTAGTGTTTTTTTTATGGACCTCAGATTTTCAG
AAGAAACCATTATCGACACCTTCTTTTCTCGCATCATTTCTGCACGAAGTCGACCAGATTTTCATCGGGCGCGCTGGACA
GCAAAATCATCCACTCAGCACTCCTACGAGGACGT-----GTTTTTCTGCATCCCAACAGAACCCCGACGAGAGTACTCG
ACGGTGATAATCGCCGCGGCAACTTGGGTTCTTCGTGCCGCAGAGCGCGCGCGCGCGCGCAG-CCCTTGCCCGGCCGA--
-------------CGTCGCATGCCGCATCCAGCAGCAA-CAGCGCGCAGCTACAGCTCCTCGTGCGAGTCCACGCGCCCG
CGCTGGCGCTGCAGGTACGTCATGGCGAGGCTGGCGTGCATCGCCGCGCCGTACGGGAGCGCGCCTTCGTCGACGAGGAA
GTGCGGCGAGTGCGCGACGTGCACCGACCCGGCCGCCTCGTTCCGTATCCCGACGAAGTAGAAGTGGGAGCCCGGCACGG
CCTCGGAGAAGGCGGCGAAGTCCTCGCTCCCCATGCACGGCTCCATGGCGCCCCGGACGCCGCCGGCGCCGACCATCTCC
GTGGCGACGTCCTCGAAGTGCGCGTGCAGCGCGGGGCTGTTGATGGTCGGGGCCAGCAGGGGCCGCCCGCCGGCG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS---------------------------S-------------------------------
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-----------------------------SSSS---------------------------S-------------------
-----S--------------------S--------------------S-------------SS-----------------
---------SS------------------SS-------------S-----------------------------------
--------------------S-------------------------S---------------------------------
------------------------------------S-------------------------------------------
--S---------S-------SSS-------------------------S---S-------S-------------------
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-----------------------SSSSSS---------------------------------------------------
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-------------------------S------------------------------S-----------------S-----
---------------------------------------SS------S--------------S----------S---SSS
SSSSSSSSSSS---------------------S--S------------------------------------S-------
---S---------------------S------------------------------------------------------
-------------S-------------S----------------------------------------------------
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---------------------------S------S--------------------S-----S------------S-----
--------------------S------------S---------------------------SS-----------------
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----------S---------------------------------------------------------------------
---S----------------------------------------------------------------------------
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-------------S------------------------------------------------------------------
------------------------------S---S----------------------------------------
>forward_2208
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----------------------------TCACCCGATCAACACATCCG--------------------------------
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>reverse_3355
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--------------------------------------------------------------------------CGGGCA
GCAAAATCATCCAC------------------------------------------------------------------
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