>input_sequence_87110
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------------------------------------------------------ATGGAGCACTCCTACAGCAGCAACAG
CGGCATCAGCAACTACGGCAGCGCGAAGGAGAAGAGGCCCCCGCTGAAGAGGGGGCAGCTGAAGCGGCAGATCGTCAGGA
CCATCAGCAACCTCGTGCTGCCAAGGAGCGACGGCATGGCCGCGGAGAAGCGAGCATCGGGTCGCACCAGCTTCGGCGCC
TACAACTGA-----------------------------------------------------------------------
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>chr1D_1_TraesCS1D01G289000
TTAGCTGTTTACACTAACGAAAATACGAGTCCGGGCTTATGTTTCTTTGCACACTTTAAACTTATGAGTGATCATCCGAT
GCCCATCAGTCTATAAGAGCTCTAGTCTGAAACTCGCCCCCCCTATGCCAAATTCCTGGCTCCGTCCCTGACTGTATGTA
TGTATTATCAGAATTAATTAAGAAGAGACGCGCAGTCGTCGGGTCAGGATAAGGTCACGGCCGGCGGCTG-GTCGTGCCC
GGCCGATCGGTCGGTGGAGGTCAGGTGTCCATGCGCGAGCCGCCGGTGGCGGCCTGGCT----GACACCTCAAGCTCAAG
CGAGCATGC-----------------------------------GGAATAGAGATGCACTGAACCTTGGAGCTAGCTACA
AACAAAGCAGAGTTAGCCGTCGCGGTCACGTGCATGCATCTCTCCTAGGACGGAAACAGTCAATGGGCAGCACTCCGGCA
CGTGCGGCTTAATCTTAATCCACGCTCGGCTC-----TGCTCTTCCCTGAATTATCTGGTGGTTC-----GTTCAGTTCA
GTTCAACGAGAGGTAAGGTAACGGAGCAAACGTGAGGGTAAATTGATCAAATCTTCTTATCTTTTTTCAACTCGAAAGAC
GCTATGGAGACGTCCAGATGACACTCTAAATATCTACTTTTCATTAGC---------------TCTG----GATTGACTG
GTCAGAAGTCTCTGGATGCTTCAAAGATGCACCCTGCCATCTCCCTTAATATTCAATCATTCCAGCCGTTTTTGGGAGCA
AGCACAGTGGCACTCTTGTGGTTAAG----GGCATAAGTTCCCCTGTTAGTGCCTTCACTGTACAAACAAGATGGCCCGG
AAGA---GGTCAAAATATTCCGCCAAAGAAATTAACATGCGTGGCGAGGCACCAAAATCGACAGAGCACAGGGTTTAGT-
-TCGCCTATAAATACTTTTCACCGTCTCATGTCCTCTTCACATTAAGC-AAGGAAGCAAGCACAACACACACACACTC--
-------------AGAAGAAGAAGAAGAAGAAGGACAACACAGGTGGTGGAGCCATGGAGCACTCCTACAGCAGCAACAG
CGGCATCAGCAACTACGGCAGCGCGAAGGAGAAGAGGCCCCCGCTGAAGAGGGGGCAGCTGAAGCGGCAGATCGTCAGGA
CCATCAGCAACCTCGTGCTGCCAAGGAGCGACGGCATGGCCGCGGAGAAGCGAGCATCGGGTCGCACCAGCTTCGGCGCC
TACAACTGAACCTCTCCCAAGTCCAAACCACATCGGTCGTCAGTCA-----AGGCTCTAGAGCGGTACAAGAAGAAATGC
TTCTACCTACT----GTACATGTTTAACTTC------CCCCCTTTCCTTCAGACCTTCCTTAGGTTTCCAACTAGCTGAG
AGACCACTCACAACTAGGGTTTTTGAGTGTTGTTTTGGGTTGTGTTTGTGTAAGAAGGAATAGAGAGGTTATGTAAATTT
TCGTATGTGATGT-GTATTACTTGG---TTATTACAAAGTAGAGATGCAACGCT------------------GATCGTTC
TTGCTCAGGGTCTGATTTTATTCAGAAGAAC-AAGTTTCCCCGTTGATTTCCCCAAAGGAAACCGTCAATATGCAGACAT
AGTGCTTGCCTCAACAGCAAGATAATGAAACGCAAAACACAACTCTCATACATC---------------TCCACGTGCAT
CAAC-------ATTTCAAATAGGATTATGATATTTTCTACGAGCGCTGTCGATTGCATATAACTGATACTCCACAAAGAG
AATAGATGGTGTGCAAGGGTACAGAACCTCAAATCAGGCAATCGATTCATGATCTGCGCTTTATCTGTGAGAAGCTAGAG
AGCATGGTTGATCTTGAATTCGCTAGCTCCACAATTTGTTCAAGTGCTACATGAAACATAAATATAAGTTAGATCAATAG
GACTAAAC------------------------------------------------------------------------
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--------CTCTACTGTTCTTGTTAGAAATATAACCTGATTCAAAGGAAACTTGGGTTGTTCGTAGTTTTGGAGACACCA
ATGCGCTGAACATTGATAATGCTTTTGATCTTGCAGTTTGAACCTAAAGTGCAGAGGAAAGGAACAATAAATAGAATTTG
GGTGTCTTGGAGTCACACATCTTTCTTTGTCACGACACAAATGTATACGAACGTCATGGCATATCAGTTTCTTGCGCCTG
AGTGAACCTGATATTCTTCATCTTTTCAAATGTGAATGTAAAATAGCATTGTTTACTAGCAAGAATGTGTAATTTGGATA
GAACTGACACAAGCCAGACTAACTTGAGT
>chr1B_149
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--------------------------------------------------------------------TGACTGTATGTA
TGTATTGTCAGAATTAATTAAGAAGAGGCGCGCAGTGATCGGGTCAGGATAAGGTCACGGCCGGCGGCTGGGTCGTGCCC
GGCCGATCGATCGGTGGAGGTGAGGTGTCCATGCGCGAGCCGCCGGTGGCGGCCTGGCAGGCCGCCACCTCAAGCTCAAG
CGAGCATGCCGTCACCAGCAG--------AAGGCTAGTGGCCAGGGAATAGAGATGCACTGAACCTTGGAGCTCGCTACA
AACAAAACAGAGTGAGCCGTCACGGTCACGTGCATGCATCTCTCCGAGGACGGAAACAGTCAATGGGCAGCGCTCCGGCA
CGTGCCGCTTAATCTTAATCCACGCCCGCCTCTGCTCTGCTCTTCCCTCAACTGTGTGGTGGTTCGTTCAGTTCAGTTCA
GTTCAACGAGAGGTAA-----CGGAGCAAACGTGAGGGTAAATTGATCAAATCTTCTTATCTTTTTTTAACCATCTTCTT
AATCCACGCACTAACTACG-----------------------------TTGGCTCGAATTCGTTCTGGATAGATTGACTG
GTCAGAAGCCTCTGGATGCTTCAAAGATGCACCCTGCCATCTCCCTTGATATTCAATCATTCCAGTCGTTTTTGGGAGCT
GGCACAGTGGCACTCTTGTGGTTAAG----GGTACAGATTCCA----TAGTGCCTTCACTGTACAAACATGATGGCCCAG
AAGAAGTGGTCAAAATATTCCGGCAAAAAAATTAACATGTGCGGCGAGACGCCGGTATTAACACAGCACGGATGATTTAG
CCCGCCTATAAATACTTTTCACCGTCTCATGTCCTCTTCACATTAAGCAAAGGGACCAAACACAAGACACACACACACAC
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGCACAACACAGGTGG---AGCCATGGAGCACTCCTACAGCAGCAGCAG
CGGCATCAGCAACTACGGCGGCGCAAAGGAGAAGAGGCCCCCGCTGAAGAGGGGGCAGCTGAAGCGGCAGATCGTCAGGA
CCATCAGCAACCTCGTGCTGCCAAGGAGCGACGGCATGGCCGCGGAGAAGCGGGCATCGGGTCGCACCAGCTTCGGCACC
TACAACTGAACCTCT-CCAAGTCCAAACCACATCCATCGTCAGTCAAGTCAAGGCTCTAGACCGGTACAAGAAGAAATGC
TTCTACCTACTTGCTGTACATGTTAAGTTCCCTT-------CTTTCCTTCAGACCTTCCATAGGTTTCCAACTAGCTGAG
AGGCCGCTTAATACTAGGGTTTTTGAGTGTTGCTTTGGGTTGTGTTTGTGTAAGAAGGAATAGAGAGGTTATGTAAGTTT
CCATATGTGATGT-GTATTACTCTG---TTATTACAAAGTAGAGAGGCAACGCTCAAGGCTCAAGGCCGACTGACCGTTC
TTGCTCAGAGTCTGATTTTCCTTGGAACAACAAAGTTTCCCCGTCGATTTCCACCAAGGAAACCGCCGATGCTCAGACAT
AGTGCTTGCCTCAAC-GCAAGACAACGAGACGCAAAACAAGCCTCTCGTGCACTTCTAGCCATTTCATATCCACGTATAT
CAACATTTCATATTTCAAATAGGATTATGATATTTTCTACAAGCGCTGCCCATTGCATATCACTGATACTCCACAAAGAG
AATCGATGGTGCGCGAGGGTACAGAACCTCAAATCAGGCAAGCGATTCATGATTTGCGCTTTACCTGTGAGAAGCTAGAG
AGCATGGTTGATCTTGAATTCGCTAGCTCCACAATTTGCTCGAGTGCTACATGAAACATAAATACTCCCTCTGTTCCGAA
TTACTTGTCTTAGATTTGTC------------------------------------------------------------
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------------------------------------------TAGATACGGATGTATCTAGCACTAAAATGAGTCGAGAT
ACATCCGTATCTAGACAAATCCAAGACAAGTAATTCGGAACGGAGGGAGTATAAGTTAGATCAATATTAGGCTACTACTG
T--------TCTACTGTTCTTGTTAGAAATATAACCTGATTCAAAGGAAACTTGGGTTGTTCGCAGTTTTGGAGACACCA
ATGCGCCGAACACTGATAATGCTTTTGATCTTGCAGTTTGAACCTAAAGTTCAGAGGAAAGGAGCAATAAAT-----TTG
TGTGTCTTGGAATCACACATCTTT-TTTGTCACGACACAAATGAATACGCACGTCGTGGCATATGAGTTTATTGCGCCTG
AGTGAATCTGATA-TCTTCATCTTTTCAAATGTGAATGTAAAATTGCATTGT----------------GTAATTTGGATA
GAACTGACACAAGCCAGACTAACTTGAG-
>chr1A_157
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----------------------------------------------------------------------------TGTA
TATCTTGTCAGAATTAACTAAGAAGAGGTACGCAGTGATCGGGTCAGGATAAGGTCACGGCCGGCGGCTG-GTCGTGCCC
GCCCGATCGATCGCTGCAGGTCAGGTGTCCATGCGCGAGCCGCCGGAGGCAGCCACGCT----GCCACCTCAAGCT----
--AGCATGCCGCCGGCCGCCGGTGGCAGCAAGGCTAGTGGC-------TAGAGATGCACTGAACCTTGGGGCTAGCTACA
AACAAACCAGAGTGAGCCGTCAGTCACGGTCACGCGAATCTCTCCGAGGACGGAAACAGTCAATGGGCAGCACACCGCCA
CGTGCTGCTTAATCTTAATCAACACTCGGCTCATGATCCAACCGC-----------------------------------
------------------------------------------------------TCTTATATTTTTTGACAGAGGTCTCC
ATATGACACCC---------ACACCCTAAATATCTACTCCATTTTCCATTGGCTTGGATTCATTCTG----GATTGACTG
GTCAGAAG------------------------------------------------------------TTTTTGGGAGCT
AGCACAGTGGCACTCTTGTGGTTAAGTAAGGGCATAAGTTCCCTAGTTAGTGCCTTTACTGTACAAAAAACATCATGGCC
TAGAAGTGGTCAAATTATTCCGCCAAACAAACTAACATGTGCGGCGAGACGCCGGTATTAACACAGCACGGATGATTTTG
CTCGCCTATAAATACTTTTCACCGTCTCATGTCCTCTTCACACACACAC---------------ACACACACACACACAC
AAGAAGAAAAAGAAGAAGGAGGACCTTCT------------------------CATGGAGCACTCGTA---CAGCAACAG
CGGCATCAGCAACTACGGCGGCGCAAAGGAGAAGAGGCCTCCACTGAAGAGGGGGCAGCTGAAGCGGCAGATCGTCAGGA
CCATCAGCAACCTCGTGCTGCCGAGGAGCGACGGCATGGCCGCGGAGAAGCGAGCATCGGGTCGCACCAGCCTCGGCACC
TACAACTGAACCTC-------TCCAAACCACATCCGTCGTCAGTCA-GTCAAGGCTCTAGACCGGGTACAAGAAGAATGC
TTCTAGCTACT----GTACATGTTACTGTGTTAACTTCCCCCTTTCCTTCAGGCCTTCCTT-GGTTTCCAACTAGCTTAG
AGACCGCTTAATACTAGGATTTTTGAGTGTTGTTTTGGGTCGTGT------AAGAAGGAATAGAGAGGTTATGTAAATTT
TCCTATGTGATGCAGTATTACTCTGTTATTAGTACAAAGTAGAGATGCAACGCTCAAGGCTCAGGGCCGACTGATCGTTC
TTGCTCAGAGTCTGATTTTACTTGGAACAACAA-GTTTCCACGTCGATTTCCACTAAGGAAACCGCCGATA-GCAGAAAT
AGTGCTTGCCTGAAC-GCAAGATAATGAGACGCAAAGCAAGCCTCTCATGCACTTGTAGCCATTTCATATTCACGTACAT
CAAC-------ATTTCAAATAGGATTAAGATATTTTCTA--AGTGCTGCCGACTGCATATCACTGATACT--ACAACGAG
AATATATGGTGTGCAAGGGTACAGAACCTCAAATCAGGTAAGCGGTTCATGATCTGCGCTTTATCTGTGAGAAACCAGAG
AGCATGGTTGATCTTGAATTCGCTAGCTCCACAATTAGTTCAAGTGCTACATGAAACAGAAATATAAGTTAGATCAATAT
AAGGCTAAAGGATAGTGTGTTCTCTACTGAAACCGTTTATAATCCAAACATAGGGCTTGCATCAATAGGCAAGATAATGA
AACAAAGACTCTTATGCACTTCTAGCCATTTCATATCCAGACGGACAATGTACAACGTTTCGAATAGGATTATGATATTT
TCTAGTACAAACGCACTGATATACTACACAAAGAGGAGAGATGGTGTGCAAGGGTACAGAACCTCAAATCAGGTAAGCGG
TTCATGATCTGCACTTTATCTGTGAGAAACTAGAGAGCATGGTTGATCTTGAATTAGCTAGCTCCACAATTAGTTCAAGT
GCTACATGAAACAAAGA--------------------------------TATAAGTTAGATCAATATAAGGCTAAAGGAC
AGTGGGTTCTCTACTGTTCTGACTAGAAATAAAACCTGTTTCGAAGGAAACTTGGGTTGTTCGTAGTTTTGGAGACACCA
ACTTTCCGAAGACTGACAATTCCTTTGATCTTGCACTTTGAACCTAAAGTGCAGAGGAAAGGAACAATCAATAGAATCTA
AGCGTCCCAGAATTACACAGCTGTCTTATTCACGACACAAATGCATAGGTGTGCTGTAGCACACCTGTATTTTGCATCTG
AGTAAATCTGTCACTCTTCAGCGTTACATATGTGAATGTGAAATTATG-TGTTTACTAGCAAGAACAA--AATTTGGATA
GAACAGTCACAAGCCAGACTAGCTTGAG-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------
------S--------------------S--------SS------------------------------------------
---------S------------------------------------------------------S---------------
--------------------------------------------------------------------------------
------S------S-------S-----------------------S----------------------------------
-----S------------------------------------------S--S-S-S------------------------
----------------SSSSS----------------------------------------------S---SS-SSSSS-
SS-SSSS-S--SSS-SSSSS----S-------------SSSSS--SSS--------------------------------
--------S--------------------------------------S-----------------S-------------S
-------------------------------------------SS---------------------------------S-
---------------------------S-----------S-S------S-S--SSS--SS---S-----S-SSSS-SS--
-----------------------------------------------------S-S---S----------------S---
------------------------------S--S-------------SSS------------------------------
-------------------S----S-------------------------------------------------------
-----------------------------------------------------------------------------S--
---------------S------------------S--------------------------S------------------
------------------------S-SS-S--------------------------------------------------
-----S--S-SS--------------------------------------------------------------------
--S-------------------SS--------------------------------------------------------
--------S-----------S-SS---S----------------S-------S-S----------S-S---S--------
---------------S------------S----------SSS-------S--SS----------------------S---
----------------------------------------S-------S-----------S-------------------
-----------------------------------------S--------------------------------------
-------------------------------------------------------------------------------S
S-SSSS-S------------------------------------------------------------------------
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------S-----S-------------------------------------------------------------------
S----------S-------------------------------S-----S-----S--------------S---------
------S------S------------------------------S--------------------SSS------------
----------------------------S
>forward_121
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---------------------CTAGTCTGAAACTCGCCCCC---------------------------------------
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>reverse_1672
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-----------------------------------------------------------------------TGCAGACAT
AGTGCTTGCCT---------------------------------------------------------------------
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