>input_sequence_87102
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---------------------------------ATGTACTATCAGGTGTCAAGATCCATTGGTGATATTTACTTGAAGAA
GCCGGAGTACAACATGGACCGAATATTTCGGAAAATTGGCCTTGTTATTGCATTGAAGAGGCTAGCTCTTACCACTGAAC
CACAAATTCATGTTCGCGAGCTCAAACCAATTGACCACTTTCTGATATTTGCCTAC---GATGGTCTTTGA---------
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>chr1A_1_TraesCS1A01G400400
GTGTGATGATTGATTTTTGGTTTTCGTGTTGGGGTGACATGATTGATGTTGGTATCATTGGGCCAGCCTTCGGTTCTTCC
-AAAAAATGGAGCGATCCTGGTTTAGTATTCCTGTATTTTCT---AAGATGTGAAGTCCTGTATATTCTTGAGGTTTTAT
CCATTAGAACATTGATTGATATCCTTGGGCAAGTGCGTATAATTTTGTTTATTTACAGTGGGATTCAGGTGAGAGCGCGA
TAAATATACCATTCCATCTGATTAGTTTCATGCCTCCCTGTCAGAGATTAGAGGCAAAAATCACTGATTGATGATAACAT
TTGGAGCTGTTGGTTTTTCGCCGGTTTGTCTGCGTTATGATTTTGGGTAGTTTGTTTGCACACTGAAATCTGGTATATGA
ATAATTGTA----ATGAAAT--TATATCAGAGATTCAGAGCTGCCTAATTTATAGCATAGAGCCATTAGATGCCATATCC
TGGAATTTAACTAATGTCCTTGACTTTTGAGTGTGTTTCCAGGTGACAATTGGAAAGAAATTGACCG-------TCGACG
TTCATTTTAGTTAGGTTTGTTAATAAGTTGAGGGTGTGTA-------AGGGGTTAGATGAAGTATGCCATATTTCAAAAA
TGGTAACTATCCCAATTAAAAAGATTTTCACTGTGTTCTTGGAAACTTGCTGAACGTACTG---------AAGGATTTTC
CTCTTATCAAGTGAATACTGAAATTGACACTCTATTGTAGCAATCCTGGTGGCTGCAACTTTGCATATATAGTATGCTGA
--------------------------GTCCTGGATTCCTGGTATAACAGTCCATATTTAC-----TCTTTCACTTTTGGT
GATAAGATACTCTATTTATCGTTCTAGAGCTAATAAACTTGTCATTGTTTGGTGATTAGCTTATGCTTGCCATTTTTTG-
-TCATCACTCATTAGTTAGTTTGTCCTCTTAGGAG-------AACTTGTGATATGAAGTTCAATACAAAGCAGAGCAAAA
GATAGATAGATAACATGAGCTAACATTTGATTGATGTACTATCAGGTGTCAAGATCCATTGGTGATATTTACTTGAAGAA
GCCGGAGTACAACATGGACCGAATATTTCGGAAAATTGGCCTTGTTATTGCATTGAAGAGGCTAGCTCTTACCACTGAAC
CACAAATTCATGTTCGCGAGCTCAAACCAATTGACCACTTTCTGATATTTGCCTAC---GATGGTCTTTGAGAGCATCTC
AGCGAGGCTGCTGCTGTGCAAATTGTCTTCAAGAACCCGAGAATGGTAAGTTCTAATATATCAGTACCATTTGACCATCC
C-ACCAT--GGGGGTTTTATTCTACATATGAATGACCTGTTAGACAG-ATGAAAGAACGCC-AAGGTTGTGTGAAATTAT
TTGTGCAAGGTATAGCAAACCGATTAGTCCAGGTTGCCTTGAAAGAGGCCATGAAGACGATAGAGCGGGGTGTGTCGCGC
CATTTCCACGACGACGTCAATGTCATTTT-GTGTACCTCGACAGGCAAGGGGGTCGCCATCAGACCAGGGTCATGGACTC
GAGCAGCAACAACACCAGTGCTCCCGTCGACATCTACTCCTACAGCTCCTTCCAATCTGTGCAGCCACGACAGGCTTACC
ATAACCCCGGTTAGTAGTTTTTCTCTTGCACAGTGCTAATTATAAAATGGTAT-------GGAAAGTTAAAATTCATCTT
AAGATGATGATTTTTCTGTGGCAACTTCTCTGAAATGAAGTCCTAACAAGAGATATTATCAAGAG-AAAAAAAA-GTGGC
CTGGTGACAATATATGTTCTTTATG--ACCGAGAGGAATGGGCGCAACACCTGTTCTTTTCATGCTCTATTGCTAGAGTG
GTTTTGCTTGTTGTTGGATCAGTTTCTGGGACTGAGTGCTGCCCCAATAGTATTTGATAATTCCACTCTTGGTGTTATGC
TTATTTCCCGGTTGGGTTGGCTTATATTCAGGACAATTTGCTTGGCTCGTAACAGAGCAACCTTCGAAAAGAAGATGATC
AAGTCTCCTTTTAAAATTGTTTTCGCCACCTGTTCTATCTTGGTGTATTGGGCAGGTCTTCAGAAGGGAGATAGTGCGAA
GGAGATGATGTAGGGAGCAGAGCTGCTCAAGATCAATGCCGCCAACATACTGAGGCTTTGTCAAGGACCGATTGGACGAA
CTTTTGGATGAAGATGATGCATTGGGATACATCATTCTAGACTCTTTA
>chr7A_1
GTGTGATGATTGATTTTTGATTTTCGTGTCGGGGTGACATGATTGATGTTGGTATCATTGGGCCAGCCTTCGGTTCTTCC
-AAAAAATGGAGCGATCCTGGTTTAGTATTCCTGTATTTTCT---AAGATGTGAAGTCCTGCATATTCTTGAGGTTTTAT
CCATTAGAACATTGAATGATATCCTTGGGCAAGTGCGTATAATTTTGTTTATTTACAGTGGGATTCAGATGAGACCGCGA
TAAATATACCATTCCATCTGATTAGTTTCATGCCTCCCTGTCAGAGATTACAGGCAAAAATCACTGATTGATGGTAACAT
TTGGAGCTGTTGGTTTTTCGCCGGTTTGTCTGCATTATGATTTTGGGTAGTTTGTTTGCACACTGAAATCTGGTATATGA
ATAATTGTA----ATGAAAT--TATATCAGAGATTTAGAGCTGCCTAATTTATAGCATAGAGCCATTAGATGTCATATCC
TGGAATTTAACTAATGTCCTTGACTTTTGAGTTTGTTTCTAGGTAACAATTGGAAAGAAATTGACAG-------TCGACC
TTCATTTTAGTTAGGTTTGTTAATAAGTTGAGGGTGTGTA-------AGGGGTTAGATGAAGTATGCCATATTTCAAAAA
TGGTAACTATCCCAATTAAAAAGATTTTCACTGTGTTCTTGGAAACTTGCTTAACGTACTG---------AAGAATTTTC
CTGTTATCAAGCGAATACTGAAATTGACACTCTATTGTAGCAATCCTGGTGGCTGCAACTTTGCATATATAGTATGCTGA
--------------------------ATCCTGGATTCCTGGTATGACAGTCCATATTTAC-----TCTTTCACTTTTAGT
GATAAGATACTCTATTTATCGTTCTAGACCTAATAAACTTGTCATTGTTTGGTGATTAGCTTATGCTTGCCA--TTTTTT
GTCATCACTCATTAGTTAGTTTGTCCTCTTAGGAG-------AACTTGTGATATGAAGTTCAATACAAATCAGAGCAAAA
GATAGATAGATAACATGAGCTAACATTTGATTGATGTACTATCAGGTGT-AAGATCCATTGGTGATATTTACTTGAAGAA
GTCGGAGTACAACATGGACCGAATATTTCAGAAAATTGGCCTTGTTATTGCATTGAAGAGGCTAGCTCTTACCGCTGAAC
CACAAATTCATGTTCGCTAGCTCAAACCAATTGACCACTTTCTGATATTTGCCTAC---GATGGTCTTTGAGAGCATCTC
AGTGAGGCTGCTGCTGTGCAAATTGTCTTCAAGAACCTGAGAATGGTAGGTTCTAATATATCAGTACCATTTGACCATCC
C-ACCAT--GGGGGTTTTATTCTACATAT-AATGACCTGTTAGACAG-ATGAAATAATGCC-AAGGTTTTGTGAAATAAT
TTGTGCATGGTATAGCAAACCGATTAGTCCATGTTTCCTTGAAAGAGGCCATGAAGACGATAGAGCGGGGTGTGTCGCGC
CATTTCCATGATGGTGTCAACGTCATTTT-GTGTACCTCGACAGGCAAGGGGGTCGCCATCAAACCAGGGTCATGGACTC
GAGCAGCATCAACACCAGTGCTTTCGTCGACATCTACTCCTACAGCTCCTTCCAATCTGTGCAGCCATGACAGGCTTACC
ATAACCCCGGTTAGTAGTTTTTCTTTTGCACAGTGCTAATTATAAAATGGTAT-------GGAAAGTTAAAATTCATCTT
AAGATGATGATTTTTCTGTGGCAACTTCTCTG-AATGAAGTCCTAACTAGAGATATTATCAACAG----AAAAAAGTGGC
CTGGTG--------------------------------------------------------------------------
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>chr5D_1
GTGTGATGATTGATTTTTGGTTTTGGTCTTGGGGCAACATGATTCATGTTGGTATCATTGGGCCATCCTTTAGTTCTTCC
--AAAAATGAAGCGATCCTGGTTTAGTATTGCTGGATTTTCTAAGAAGATGTGAAGTCCTGCATGTTCTTGAGGTTTTAT
CCATTTGAACATTGATTGTTATCCTTGGGGAAGTACGTATAATTTTGTTTATTTACAGTGTATTTCAGGTGAGAGCATGA
TTAAGATACCATTCCATCTAATTAGTTTCATGCCCCC-TATCAGAGATTAGAAGCAAAAATCACTTATTGATGATAACAT
TTGCAGTTGTTTGTTTTTCGTCGGTTTGTCTGCGTTATGATTTTGGGTACATTGTTTGCACACTGAAATATGGTATATTA
ATAATTGTACGTAATGAAATTGTATATCAGAGATTCAGAGGTCCCTAATTTATAGCATAGAGCCATTAGATGCCATATCC
TGGAACTTAACTAATGTCCTTGACTTTTGAGTGTGTTTCCAGGTAACAATTGGAAAGAAATTGACCGCTTCTCCTCGACC
TTCATTTTAGTTAGGTTTGTTATTAAGTCGAGGGTGTGTAAGGGATTAGGGGTTAGATGAAGTATGTCATATTTTAGAAA
TGGTAACTATC-CAATTAAAAAGATTTTCACAGTATTCCTGGAAACTAG---------CTG---------AAGAATCTTC
CTCTTATCAAGCGAATACTGAAATTGACACTCTATTGTAGCAATCCTGGTGGCTGCAACTTTGCATATATAGTATCCTAA
ATCCTGGATTCCTGGGATCATAACCTATCCTGGATTCCTAGTATCACAGTCCATATTTAC-----TCTTTCTCTTTTGGT
GATAAGATACCCTATTTATCGTTGTAGAGCTAATAAACTTGTCATTGTTTGGTGATTAGCTTATGCTTGCCA--TTTTT-
-TCATCACTCATCAATTAGTTTGTCCTCTTAGGAG-------AACCTGTGATATGAAGTTCAATACAAATCAGAGCAAAA
GATAGATAGATAACATGAGCTAACATTTGATTGATGTACTACCAGATGTCAAGATCCATTGGTGATGTTTACTTGAAGAA
GCCGGAGTACATCATGGACCTAATATTTTGGAAAATTGGTCTTATTATTGCATTGAAGAGGCCAGCTCTTACCGCTGAAC
CACAAAATCATGTTTGCAAACTCAAACCAACTGACGGGTTTCTGATATTGGCCTTATTAGAAGGTCTTTGAGAGCATCTT
AGTGAGGCTGCTGCTGTGCAAATTGTCTTCAAGAACCCAAGAATGGTATGTTCCAATATTTCAATACCATTTGACCATCC
C-ACCAT--GGG-GTTTTATTCTTCATATGAATGATCTGTTATACCG-GTGAAATAACGCC-AAGGTTGTGTGAAATAAT
TTGTGCAAGGTATAGCAAACTGATTAATCGAGGTTGCCTTGAAAGAGGCCATGAAGAAGATAGAGAGGGG-GTGTCGCGC
CATTTCCACGACGACATCAACGTCATCATGGTGTATCTCGACCGGCACAGGGGTCACCGTTAGACCAGGGTCATGGACTC
AAGCAACAAAGATACCAACGCTCTCGTCGACATCTACTCCTACAACTCCGTCCAATCTGTGCAGCCACAACAGGCTTACC
GTAACTCCAGTTAGTAATTTTTCTCTTGCAGGGTGCTAATTATAATATGGTAA-------GGAAAGTTAAAATTCCTCTT
AAAATGCTAATTTTTCTATGGCAACTTCTCTGAAATGCAGTCCTAACTAGAGATGTTATCAACAG----AAAAA-GTGGC
ATGGTGATAATATATGTTCTTTATGTAACCAAGAGGAATTGGCACAACACTTGTTCTTTTCGTGTTCTGTTGCTAGAGTG
GTTTGGCTTGTTGTTGGATCCGTTTTGGGGATTGAATGCCGCCCCAATAGTATTTGGCAGCT-CATTCTTGGTGCTATGC
TTATTTCCCGGTTGGGTTGGCTTATATGCTGGACTATTTGGTTGGCTTGTAAGAAAGCAACCTTTGAAAAGAAGATGATC
AAGTCTCATTTTAAAATTGTTTTCGCCGCCTGTTCTATCTTGGTGTAGTGGGCAGGTCTTCAGAAGGGAGATAGTGCGAA
GGAGATGAAGTAGGGAGTAGAGCTTCTCAAGATCAATGCCGCCAACATACCGAGGCTTCACGAAGGACCGATTCAAGGAA
CTTTTGGATGAAGATGGTGCACTGGGATACATCATTCTAGACTCTTTA
>chrUn_1
GTGTGATGATTGATTTTTGGTTTTCGTGTTGGGGCGACATGATTGATGTTGGTATCATTGGGCCAGCCTTCGGTTCTTCC
AAAAAAATGGAGCGATCCTGGTTTAGTATTCCTGTATTTTCT---AAGATGTGAAGTCCTGCATATTCTTGAGGTTTTAT
CCATTAGAACATTGATTGATATCCTTGGGCAAGTGCGTATAATTTTGTTTATTTACAGTGGGATTCAGATGAGAGCGTGA
TAAATATACCATTCCATCTGATTAGTTTCATGCCTCCCTGTCAGAGATTAGAGGCAAAAATCACTGATTGATGATAACAT
TTGGAGCTGTTGGTTTTCCGCCGGTTTGTCTGCGTTATGATTTTGGGTAGTTTGTTTGCACACTGAAATCTGGTATATAA
ATAATTGTA----ATGAAAT--TATATCAGAGATTCAGAGCTGCCTAATTTATAGCATAGAGCCATTAGATGCCATATCC
TGGAATTTAACTAATGTCCTTGACTTTTGAGTGTGTTTCCAGGTAACAATTGGAAAGAAATTGACCG-------TCGACC
TTCATTTTAGTTTGGTTTGTTAATAAGTTGAGGGTGTGTA-------AGGGGTTAGATGAAATATGCCATAATTAAAAAA
TGGTAACTATCCCAATTAAAAAGATTTTCATTGTGTTCTTGGAAACTTG---------CTGAACGTACTGAAGAATTTTC
CTCTTATCAAGCGAATACTGAAATTGACACTCTATTGTAGCAATCCTGGTGGCTGCAACTTTGCATATATAGTATGCT--
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>chr4A_1
GTGTGATGATTGATTTTTGGTTTTGGTCTTGGGGAAAGATGATCCATGTTGGTATCATTGGGCCATCCTTCAGTTCTTCC
AAAAA-ATGAAGCGATCCTGGTTTAGTATTGATGGATTTTCTAAGAAGATGTGAAGTCCTGCATGTTCTTGAGGTTTTAT
CCATTTGAACCTTGATTGATATCCTTGGGGAAGTACATATAATTTTGTTTATTTACAATGGAGTTCAGGTGGGAGCATGA
TTAAGATACCATTCCATCTGATTAGTTTCATGCCTCCATATCAGAGATTAGAAGCAAAAATCACTGATTGATGATAACAT
TTGCAGTTGTTTGTTTTTCGTCGGTTTGCCTGCGTTATGATTTTGGCTACTTTGTTTGCACACTGAGATATGGTATATGA
ATAATTGTACATAATGAAATTCTATATCAGAGATTCAAAGCTCCCTAATTTATGGCATAGAGCCATTAGATGCCATATCG
TGGAACTTGACTAATGTCCTTGACTTTTGAGTGTGTTTCCATGTAACAATTGGAAAGAAATTGACCGCTTCTCTTCGACT
TTCATTTTAGTTAGGTTTGTTAATAAGTCAAGGGTGTGTAAGGGGTTAGGGGTTAGATGAAGTATGTCATATTTTAGAAA
TGGTA-CTATCCCAATTAAAAAGATTTTCACAGTGTTCCTGGAAACTAG---------CTG---------AAGAATTTTT
CTCTTATC-----AATACTGAAATTGACACTCTATTGTAGCAATCCTGGTGGCTGCAACTTTGCATATATATTATCCTAA
ATCCTGGATTCATGGGATCATAACCGATCTTGGATTCCTAGTATCATAGTCCATA-TTAC-----TCTTTCTCTTTTGGT
GATAAGATACTCTATTTATTGTTATAGAGCTAATAAACTTGTCATTGTTTGGTGATTAGCTTATGCTTGCCA--TTTTG-
-TCATCACTCATCGTTTAGTTTGT--------------------------------------------------------
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>chr5D_759
GTATCCT-------------------------------------------------------------------------
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-----------------------------------------------------------------------------TGA
--------------------------TTCCTGTGATCCTGTGATCATAGTCCATATATAG-----TTTCTCTCTTTTGGT
GATAAGATACTCTATCTATTGTTGGAAAGCTAATAAACTTGTTATTGTTTGGTGATTAGCTTATGCTTGCC----TTTTT
GTCATCACTCATCAGTTAGTTTGTCCTCTTAGGAGTTAGGAGAACCTATGATATGAAGTTCAATGCAAAGCAGAGCAAAA
GAGAGATGGATAACATGAGCTAACAATTGATTGTTGTACCATCAGGTGTCAAGATCCATTGGTGATGTATACTTGAAGAA
ACCGGAGTATAGCCTGGACCCATTATTTCGGCAGATCGGCCCTGTTATTGCGTTGAAGAGGCCAGCTCTTAGCGCTGAAC
CACAAATTCATGTTCGCAAGCTCAAACCAAACGATCAGTTCATAATATTTGCCTCG---GACGGTCTTTGGGAGCATCTC
AGCGATGATGCTGCTGTGCAAATTGTCTTCAAGAACCCAAGAACGGTAGGTTCCAATGTAACAGTACCATTTGCTATTCT
A-GTG-T--GGGGGTTTTGCTCCGCGTATGAATCATCTGTTCGACAAAATGAAATAACGCC-AAGT----------TAAT
TTGTGCAGGGTATAGCAAACCGACTAGTGCGGGCTGCCTTGAAGGAGGCCACGAAGAAGAGAGAG---------------
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>chrUn_763
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---------------------------------------------------------------------------GCTGA
--------------------------ATCCTGGATTCCTGGTATGATAGTCCATATTTAC-----TCTTTCACTTTTGGT
GATAAGATACTCTATTTATCGTTCTAGAGCTAATAAACTTGTCATTGTTTGGTGATTAGCTTATGCTTGCCA--TTTTTT
GTCATCACTCATTAGTTAGTTTGTCCTCTTAGGAG-------AACTTGTGATATGAAGTTCAATACAAAGCAGAGCAAAA
GATAGATAGATAACATGAGCTAACATTTGATTGATATACTATCAGGTGTCAAGATCCATTGGTGATATTTACTTGAAGAA
GCCGGAGTACAGCATGGACCGAATATTTCGGAAAATTGGCCTTCTTATTGCATTGAAGAGGCTAGCTCTTACCGCTGAAC
CACAAATTCATGTTCGCAAGCTCAAACCAATTCACCACTTCCTGATATTTGCCTAC---GATGGTCTTTGAGAGCATCTC
AGCGAGGCTGCTGCTATGCAAATTGTCTTCAAGAACCCGAGAATGGTAGGTTCTAATATATCAGTACCATTTGACCATCC
C-ATCAT--GGGGGTTTTATTCTACATATGAATGACCTGTTAGACAG-ATGGAATAACGCC-AAGGTTGTGTGAAATAAC
TTGTGCAAGGTATATCAAACCGATTAGTCCAGGTTGCCTTGAAAGAGGCGATGAAGACGATAGAGCGGGGTGTGTCACGC
CATTTCCACGACGACGTCAACGTCATTTT-GTGTACCTCGACAGGCAAGGGGGTCGCCATCAGACTAGGGTCATGGACTC
GAGCAGCAACAACACCAGTGCTCCCGTCGACATCTACTCCTACAGCTCCTTCCAATCTGTGCAGCCACAACAGGCTTACC
ATAACCCCAGTTAGTAGTTTTTCTCTTGCACAGTGCTAATTATAAAATGGTAT-------GGAAAGTTAAAATTCCT--T
AAGATGATGATTTTTCTGTGGCAACTTCTCTGAAATGAAGTCCTAACTAGAGATATTATCAACAGGAAAAAAAA-GTGGC
CTGGTGACAATATATGTTCTTTATG--ACCAAGAGGAATGGGCGCAACACCTGTTCTTTTCATGCTCTATTGCTAGAGTG
GTTTTGCTTGTTGTTGGATCAGTTTCTGGGACTGAGTGCTGCCCCAATAGTATTTGATAGTTCCATTCTTGGTGTTATGC
TTATTTCCCGGTTGGGTTGGCTTATATTCAGGACTATTTGGTTGGCTTGTAACAGAGCAACCTTCGAAAAGAAGATGATC
AAGTCTCCTTTTAAAATTGTTTTCGCCACCTGTTCTATCTTGGTGTATTGGGCAGGTCTTCAGAAGGGAGATAGTGCGAA
GGAGATGATGTAGGAAGCGGAGCTGCTCAAGATCAATGCCGCCAACATACTGAGGCTTCGTCAAGGACCGGTTGGACGAA
CTTTTGGATGAAGATGATGCATTGGGATACATCATTCTAGACTCTTTA
>chrUn_763
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---------------------------------------------------------------------------GCTGA
--------------------------ATCCTGGATTCCTGGTATGATAGTCCATATTTAC-----TCTTTCACTTTTGGT
GATAAGATACTCTATTTATCGTTCTAGAGCTAATAAACTTGTCATTGTTTGGTGATTAGCTTATGCTTGCCA--TTTTTT
GTCATCACTCATTAGTTAGTTTGTCCTCTTAGGAG-------AACTTGTGATATGAAGTTCAATACAAAGCAGAGCAAAA
GATAGATAGATAACATGAGCTAACATTTGATTGATATACTATCAGGTGTCAAGATCCATTGGTGATATTTACTTGAAGAA
GCCGGAGTACAGCATGGACCGAATATTTCGGAAAATTGGCCTTCTTATTGCATTGAAGAGGCTAGCTCTTACCGCTGAAC
CACAAATTCATGTTCGCAAGCTCAAACCAATTCACCACTTCCTGATATTTGCCTAC---GATGGTCTTTGAGAGCATCTC
AGCGAGGCTGCTGCTATGCAAATTGTCTTCAAGAACCCGAGAATGGTAGGTTCTAATATATCAGTACCATTTGACCATCC
C-ATCAT--GGGGGTTTTATTCTACATATGAATGACCTGTTAGACAG-ATGGAATAACGCC-AAGGTTGTGTGAAATAAC
TTGTGCAAGGTATATCAAACCGATTAGTCCAGGTTGCCTTGAAAGAGGCGATGAAGACGATAGAGCGGGGTGTGTCACGC
CATTTCCACGACGACGTCAACGTCATTTT-GTGTACCTCGACAGGCAAGGGGGTCGCCATCAGACTAGGGTCATGGACTC
GAGCAGCAACAACACCAGTGCTCCCGTCGACATCTACTCCTACAGCTCCTTCCAATCTGTGCAGCCACAACAGGCTTACC
ATAACCCCAGTTAGTAGTTTTTCTCTTGCACGGTGCTAATTATAAAATGGTAT-------GGAAAGTTAAAATTCCT--T
AAGATGATGACTTTTCTGTGGCAACTTCTCTGAAATGAAGTCCTAACTAGAGATATTATCAACAGGAAAAAAAA-GTGGC
CTGGTGACAATATATGTTCTTTATG--ACCAAGAGGAATGGGCGCAACACCTGTTCTTTTCATGCTCTATTGCTAGAGTG
GTTTTGCTTGTTGTTGGATCAGTTTCTGGGACTGAGTGCTGCCCCAATAGTATTTGATAGTTCCATTCTTGGTGTTATGC
TTATTTCCCGGTTGGGTTGGCTTATATTCAGGACTATTTGGTTGGCTTGTAACAGAGCAACCTTCGAAAAGAAGATGATC
AAGTCTCCTTTTAAAATTGTTTTCGCCACCTGTTCTATCTTGGTGTATTGGGCAGGTCTTCAGAAGGGAGATAGTGCGAA
GGAGATGATGTAGGAAGCGGAGCTGCTCAAGATCAATGCCGCCAACATACTGAGGCTTCGTCAAGGACCGGTTGGACGAA
CTTTTGGATGAAGATGATGCATTGGGATACATCATTCTAGACTCTTTA
>chrUn_763
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---------------------------------------------------------------------------GCTGA
--------------------------ATCCTGGATTCCTGGTATGATAGTCCATATTTAC-----TCTTTCACTTTTGGT
GATAAGATACTCTATTTATCGTTCTAGAGCTAATAAACTTGTCATTGTTTGGTGATTAGCTTATGCTTGCCA--TTTTTT
GTCATCACTCATTAGTTAGTTTGTCCTCTTAGGAG-------AACTTGTGATATGAAGTTCAATACAAAGCAGAGCAAAA
GATAGATAGATAACATGAGCTAACATTTGATTGATATACTATCAGGTGTCAAGATCCATTGGTGATATTTACTTGAAGAA
GCCGGAGTACAGCATGGACCGAATATTTCGGAAAATTGGCCTTCTTATTGCATTGAAGAGGCTAGCTCTTACCGCTGAAC
CACAAATTCATGTTCGCAAGCTCAAACCAATTCACCACTTCCTGATATTTGCCTAC---GATGGTCTTTGAGAGCATCTC
AGCGAGGCTGCTGCTATGCAAATTGTCTTCAAGAACCCGAGAATGGTAGGTTCTAATATATCAGTACCATTTGACCATCC
C-ATCAT--GGGGGTTTTATTCTACATATGAATGACCTGTTAGACAG-ATGGAATAACGCC-AAGGTTGTGTGAAATAAC
TTGTGCAAGGTATATCAAACCGATTAGTCCAGGTTGCCTTGAAAGAGGCGATGAAGACGATAGAGCGGGGTGTGTCACGC
CATTTCCACGACGACGTCAACGTCATTTT-GTGTACCTCGACAGGCAAGGGGGTCGCCATCAGACTAGGGTCATGGACTC
GAGCAGCAACAACACCAGTGCTCCCGTCGACATCTACTCCTACAGCTCCTTCCAATCTGTGCAGCCACAACAGGCTTACC
ATAACCCCAGTTAGTAGTTTTTCTCTTGCAC-------------------------------------------------
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>chr5A_769
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---------------------------TCCTGGATTCCTGGGATCATAGTCCATATACAG-----TTTCTCTCTTTTGGT
GATAAGATGCTCCATTTATCGTTGGGAAGCTAATAAACTTGTTATTGTTTGGTGATTAGCCTACGCTTGCC----TTTTT
GTCATCACTCATCAGTTAGTTTTTCCTCTTAGGAGTTAGGAGAACCTATGATATGAAGTTCAATGCAAAGCAGAGCAAAA
GATAGATAGATAACATGAGCTAACAATTGATTGTTGTACTATCAGGTGTCAAGATCCATTGGTGATGTATACTTGAAGAA
ACCGGAGTATAGCTTGGACCCATTATTTCGGCAGATCGGCCCTGTTATTGCATTGAAGAGGCCTGCTCTTAGCGCTGAAC
CACAAATCCATGTTCGCAAGCTCAAACCAAACGATCAGTTTATAATATTTGCCTCG---GACGGTCTTTGGGAGCATCTC
AGCGATGATGATGCTGTGCAAATTGTCTTCAAGAACCCAAGAACGGTAGGTTCTGATATATCAATACCAGTTGATGATCT
C-ATG-TGGGGAGGTTTTCCTCCACGTATGAATGATCTGCTAGAACAAATGAAATGAC--------TTGTGTGAAATCAC
TTTTGCAGGGTATAGCAAACCGATTAGTGCGGTCCGCCTTGAAGGAGGCCACGAAGAAGAGAGAG---------------
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>chr5B_769
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---------------------------TCCTGGATTCCTGGTATCATAGTCCATATAAAATTAAATTTCTCTCTTTTGGT
GATAAGATACTCCATTTATCGTTCGAAGGCTAATAAACTTGTTATTGTTTGATGATTAGTCTATGCTTGCC----TTTTT
GTCATCACTCATCAGTTAGTTTGTCCTCTTGGGAGTTGGGAGAACCTATGATATGAAGTTCAATGCAAAGCAGAGCAAAA
GAGAGATGGATAACATGAGCTAACAATTGATTGCTGTACCATCAGGTGTCAAGATCCATTGGTGATGTATACTTGAAGAA
ACCAGAGTATAGCCTGGACCCATTATTTCGGCAGATCGGCCCTGTTATTGCGTTGAAGAGGCCAGCTCTTAGCGCTGAAC
CACAAATCCATGTTCGCAAGCTCAAACCAAACGACCAGTTCATAATATTTGCCTCG---GACGGTCTTTGGGAGCATCTC
AGCGATGATGCTGCTGTGCAAATTGTCTTCAAGAACCCAAGAACGGTAGGTTCCAATGTAACAATACCATCTGCTATTTC
TCGTG-T--GGGGGTTTTGCTCCGCGTATGAATCATCTGTTGGACCAAATGAAATAACGCCGAAGT----------TATT
TTGTGCAGGGCATAGCAAACCGACTGGTGCGGGCCGCCTTGAAGGAGGCCACGAAGAAGAGAGAG---------------
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>chr4A_912
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-----------------AGTTTGTCCTCTGAGA-------AGAACCTTTGATATGAAGTTCAATATAAAGCAAAGCAAAA
-ATAGATAGATAACATGAGCTAACATTTGATTGACGTACTACCGGATGTCAAGATCCATTGATGATGTTTACTTGAAGAA
GCCGAAGTACATCATGGACCTAATATTTCGGAAAATTGGTCTTGTTATTGCATTGAAGAAGCCAACTCTTACCGCTGAAC
CACAAAATCATGTTTGTAAGCTCAAACCAACTGACCGGTTTCTGATATTTGCCTCA---GACGGTCTTTGAGAGCATCTT
AGCGAGGCTGTTGCTGTGCAAATTGTCTTCAAGAACCCAAAAATGCTAGGTTCTAATATTCCGGTACCATTTGACCATCC
C-ACCAT---GGGGTGTTATTCTTCATATGAATGATCTGTTAGACCG-GTCAAATAACGCC-AAGGTTGTGTG-AATAAT
TTGTGCAAGGTATAGCAAACCGATTAATCCAGGTTGCCTTGAAAGAGGCCATGAAGAAGATAGAGT-GGGGGTGTTGCGC
CATTTCCACGACGACATCAACGTCATCATGGTGTATCTCGACCGGCACAGGGGTCACCGTCAGACCAATGTCATGGACTC
GAGCAACAACGACACAAGCACTCCTGTCGACATCTACTCCTACAGCTCCGTCCAATCTGTGCAGCCATGATAGTCTTACT
GTAACTCTGGTTAGTAGTTTTTCTCTTGCAGGGTGCTAATTATAAAATGGTAAATGGTATGGAAAGTAAAAATTCCTCTT
AAAATGCTGATTTTTCTGTGGCAACTTCTCCGAAATGCAGTCCTAACTAGAGATGATATCAACCG----AAAAA-GTGGC
ATGGTGATAATATATGCTATTTATGTAACCAAGAGGAATTGGCGCAACACCTGTTCTTTTTGTGTTCTATTGCTAGAGTG
GTTTGGCTTGTTGTTAGATCCGTTTTGGGGATTGAATGCCACCCCAATAGTATTTGGCAGTTC-ATTATTGGTGTTATGC
TTATTTCCCGGTTGGGTTGGCTTATATGCTGGACTATTTGGTTGGCTTGTAACAAAGCAACCTTTGAAAAGAAGATGATC
AAGTCTCATTTTAAAATTGTTTTCGCCGCCTGTTCTATCTTGGTGTATTGGGCAGTTCTTCAGAAGGGAGATAGTGCGAA
GGAGATGAAGTAGGGAGATGAGCTTCTCAAGATCAATGCTCCCAACATACTGAGGCTTCGCGAAGGACCGATTGAAGGAA
CTTTTGGATGAAGATGGTGCAACGGAATACATCATTCTAGACTCTTTA
>chrUn_1683
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-----------TTTTCTGTGGCAACTTCTCTGAAATGAAGTCCTAACTAGAGATATTATCAACAGGAAAAAAAA-GTGGC
CTGGTGACAATATATGTTCTTTATG--ACCAAGAGGAATGGGCGCAACACCTGTTCTTTTCATGCTCTATTGCTAGAGTG
GTTTTGCTTGTTGTTGGATCAGTTTCTGGGACTGAGTGCTGCCCCAATAGTATTTGATAGTTCCATTCTTGGTGTTATGC
TTATTTCCCGGTTGGGTTGGCTTATATTCAGGACTATTTGGTTGGCTTGTAACAGAGCAACCTTCGAAAAGAAGATGATC
AAGTCTCCTTTTAAAATTGTTTTCGCCACCTGTTCTATCTTGGTGTATTGGGCAGGTCTTCAGAAGGGAGATAGTGCGAA
GGAGATGATGTAGGAAGCGGAGCTGCTCAAGATCAATGCCGCCAACATACTGAGGCTTCGTCAAGGACCGGTTGGACGAA
CTTTTGGATGAAGATGATGCATTGGGATACATCATTCTAGACTCTTTA
>SNPs
--------------------------------------------------------------------------------
-------------------------------------------------------------S------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S----------------------------------S
--------------------------------------------------------------------------------
---------------------------------------------------S---------------------S------
-----------S--------------------------------------------------------------------
--------------------------S-----------------S-----------------------------------
------------------------------------------------------------------------SS------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S------
-----------------S--------------------------------------------------------------
------------------------------------------------S-------------------------------
------------------------------------------------------S----------------------S--
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------S-----------------
------------------------------S-------------------------------------------------
-----------------------------------------------------------S-----S--------------
----------------------------------S-----S------S--------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S---------------------
------------------------------------------------
>forward_560
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------GGAAAGAAATTGACCGTCGACG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
>reverse_2219
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TGTCAAGGACCGATTGGACG--
------------------------------------------------
