>input_sequence_87099
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------ATGGTATTGAGTATTGCAAT
ATCGAACTTCACATTCATTGCACC----TAATTTCTGGAACAAGACGATCGCTTCATCGGTGCAATTATTCCTACAAAAT
CCTCCAAGAACTATCCTGTATGTGGAAATGCTCACTGCTGTTCCACTTTCAATCATCTCATTGAACAACTTCTTTGCAGC
AATTGTTGCCCCAGCATGA-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>chr1A_1_TraesCS1A01G067100
CATGTTACACTCACTCCAGATCTCACAGCATTTCAGGAATAGTACAGACCT-CCCCCATGCTCCTGTGAGCTGAGCCCAA
TTGCTTCACTCTAACAAGTCATGAATCTGACACAGCCACATTCAAATCCCAAGACAAATGATTGAGAAACAA---AGGTA
TATTATGCGATGGCATAACACCTTGGAACTGCACATCATACACCAATTTAGCCGAATGGAAACCATCC-------GCAGG
CCGCAGCTGGGTTCCAAACAATACCATCAAGCACATCAGGGT-GCAGTGAGACCAGAGTACACCATGAGGAAGAACTCGA
TAAACTCTGGGACAAGATCCACCATCATATGACCCCGAACACCCA----CAATATTTTTACCATTAGCAAAAGCACCACA
CACCAGA----CAACCCTTGCACAAGGAGACAGCATGAAGACGGAACAAAATGACCATAGCATACACGCCCAGTAGCCAC
ACATCAGAGCAGAACACCATGGCACACGGCATTATCACCCAGACCGGTCTTGGCGAGTGGATGGAAGAGAACACATGTTG
ACATGGTTAAAAGGGAGCTCCGAACCATGCCAAAACTTATCTACCAAGTCCAGCGCATCAAATGACTCCACCAAAGAATT
GGTATTTCGCAGGGAGCAATTGTAATTGTTCCTGATATTTGCCTTTCTCCGAAAAGAGAGACAACAACAACGAAGTGGTC
GAAGCTTCAAAAGAGATGATCTTCCCATCAACTTTAGACATATAATTTGCTGCATTGACTATCTCCCCCTTTTCCAACAA
CGTTCTGATGATATAATTTATAAGACGAGAGCTGGGAGCACAACCACTCTTCTCCATTGATGAAAACATATTGTCAGCTT
CTTCCAACGATCCTTCTTTCAGAAGATTCTGTATTACTACTCCGTAAGTAGAGGCATTAGGTACGAGCCCACAGGCTGGT
AATGAAGCAAACAAATCGTTAGCTTCTTCTCTTCTCTGAACCTTGTACATTGCATTAATCATGGTATTGAGTATTGCAAT
ATCGAACTTCACATTCATTGCACC----TAATTTCTGGAACAAGACGATCGCTTCATCGGTGCAATTATTCCTACAAAAT
CCTCCAAGAACTATCCTGTATGTGGAAATGCTCACTGCTGTTCCACTTTCAATCATCTCATTGAACAACTTCTTTGCAGC
AATTGTTGCCCCAGCATGAAATAACCCATCCAGTATGATGTTATATGCAACAGTGTCAGGTTTAACTCTCTTATGCTCCA
T---TTCTCTGAATAGAATAACACCATCATCGAGCCTTCCACTCTTACAATACCCACTAATAAGTGAGCTATATGTAACA
ACAGTAGGCTCAATGCCAGCTGATACCATGGAATCAAGTACACCGAGTGCTTTCTCCATGTTGCCGACTAAGCAATATCC
ATCAATCAGAGTATTAAATGCAATGAGATCAGGTCTCTCACCAATGTCTATAACCAAGTCAAAGATATGGTGCGCATCTA
TGACCCTTCCTTCGTTGCACAGACTATGCATTATTGAATTGAAGAAGACAATGGTAGGACGACAAATACATTTGTCCGTC
ATTTCAAAAATGAACTCCTTCGCTTTCACCAAATCACCGTGTGTACAGAATCCCTGAATTAAGGAGCGATAAACAACTTT
GCTTGGCTGTACTCCCTTCCCAA---TCATCTGATTAAAATTGTCCACAGCATCAGCCAGCCTACCCATTCTGCAAAGTG
CAGCTATTATGGTTGCATAGGTGCACACATCCGGACTCATTCCTTGTTCCCGCATTTCAGTCAACATATGCATAACTTCA
TCCATCATCCCACACTTAGCATATGCATTAATGAATATGTTGAAAACATGGTGGTCCGGTACAATACCTTTGCCTACCAT
TGAATTAAAGAGATTAACCATATCAGCAAAGCACCCTTCGTTTGCATACCCATGAAGCAAAGTAGAGTAGGATACGACAT
TAGGCTTGTGGCCCTTCGCAGCCATGGAATAAAGAAGTTCTGCAGCTTCTCTGCTTCTTCCATGCTTGCAGAGGGAGGCC
ATGCATGAGTTCCAAGTGACAGTATCTGGTACAAGACCGCGGCTTGTCATTTCTCTAAACATTTGAGTCGCCTTTTTCCA
CTGGCCCAAAGTGGAATATCCATGGATCATTGCATTATATGTCACTCCATTCGGTCGAATATCAT
>chr1B_1
CATGTTACACTCACACCAGATCTCACAGCATTTTAGGA-TAGTGCAGACCTCCCCTTATGCTCCTGCGAGCTCCGCCTGA
GTTCTTTGCTCTAACGGGTCACAAACCTGACATAGTCACATTCCCCGGGG----CGAAGGATTGAGAAACAATAGAGGTA
CATTATGCGATGGCACAACACCTTGGACCTGCACATCATACGCCAATTTAGCCAAATGGAGACCATCA-------GCAG-
------CTGGGTTCCAAACATTACCATCAAGCACATCAGCGT-GCAGCGAGACCGAC-TCCACCGAGAGAAAGAGCTCCA
TGAACTCTGGAACAAGATCCAACATCG-------------------------TATGATTGTCATTAGCAAACGCGCCAC-
-ACCAGA----CAGCCCTTGCACAAGGAGACAACATGTAGACGGAGC--AGTGACCATAGCATACACGCCCAGTAGCCAC
ACATCAGAGCAGAACACTGTGGCGCACGGCATTATCACCGAGATCGATCTTGGCAAGTGGATGGAAGAGAACACATGTTG
ACATAGTTAAAAGGGAGCTCCGAACCATGCCAAAGCTTATCTACAAAGTCCAGTGCATCAAATGACTCCACCAAAGAAAT
GGTATTTCGCAGGGAGCAATTGTAATTGTTCCTGGTATTTGCCTTTCTCCGAAAAGAGAGACAACATCAACGAAGTGGTT
GAAGCTTCAAAAGAAATGATCTTCCCATCAATTTTAGACATATAATTTGCTGCCTTGACTATTTCCCCCTTTTCCAATAA
CGTTCTGATGATATCATTTATAAGACGAGAGCTGGGAACACAACCACTCTTCTCCATTGATGAAAACATATTGTCAGCTT
CTTCCAACGGTCCTTCTTTCAGAAGATTCTGTATTACTACTCCGTAAGTAGAGGCATTAGGTACCAGCCCACAGGCTGGT
AATGAAGCAAACAAATCGTTAGCTTCTTCTCTTCTCTGAACCTTGTACATTGCATTAATCATGGTATTGAGTATTGCAAT
ATCGAACTTCACATTCATTGCACC----TAATTTCTGGAACAAGACGATTGCTTCATTGGTGCAATTATTCCTACAAAGT
CCTCCAAGGACTATCCTGTATGTGGAAATGCTCACTACTGTTCCACTTTCAACCATCTCATTGAACAACTTCTTTGCAGC
AATTGTTCCCCCAGCATGAAATAACCCATCCAGTATGATGTTATATGTAACAGTGTCAGGTTTAACTCTCTTATGCTCCA
T---TTCTCTGAATAGAATAACACCATCATCGAGCCTTCCACTCTTACAATACCCACTAATAAGTGAGCTATATGTAACA
ACAGTAGGCTCAATGCCAGCTGATACCATGGAATCAAGTACACCGAGTGCTTTCTCCATGTTGCCGACTAAGCAATATCC
GTCAATCAGAGTATTAAATGCAATGAGATCAGGTCTCTCACCAATGTCTATAACCAAGTCAAAGATATGGTGCGCATCTA
TGACCCTTCCTTCGTTGCACAGACTATGCATTATTGAACTGAAGAAGACAATGGTAGGACGACAAATACATTTGTCCGTC
ATTTCAGAAATGAACTCCTTCGCTTTCACCAAATCACCGTGTGTACAGAATCCCTGAATTAAGGAGCGATAAACAACTTT
GCTTGGCTGTACTCCCTTCCCAA---TCATCTGATTAAAATTGTCCACAGCATCAGCCAGCCTACCCATTCTGCAAAGTG
CAGCTATTATGGTTGCATAGGTGCACATATCCGGACTCATTCCTTGTTCCCGCATTTCAGTCAACATATGCATAGCTTCA
TCCATCATCCCACACTTAGCATATGCATTAATGAATATGTTGAAAACATGGTGGTCCGGTACAATACCTTTGCCTACCAT
TGAATTAAAGAGATTAACCATATCAGCAAAGCACCCTTCGGTTGCATACCCATGAAGCAAAATAGAGTAGGATACGACAT
TAGGCTTGTGGCCCTTCACAGCCATGGAATAAAGAAGTTCTGCAACTTCTTTGCTTCTTCCATGCTTGCAGAGGGAGGCC
ATGAATGAGTTCCAAGTGACAGTATTTGGTACAAGACCGCGGCTTGTCATTTCTCTAAACATTTGAGTCGCCTTTTTCCA
CTGGCCCAAAGTGGAATATCCATGGATAATTGCAGTATATGTCACTCCATTCGGTCGAATATCAT
>chr1B_1
CATGCTACAGTCACGCCAGATCTCACAGCATTTCAGGAATAGCACAGACCT-CCCCCATGCTCCTGTGAGCTGAGCCCAA
TTTCTTTACTCTAACAGGTCACGAACCTGACATAGTCACATCCAAGTCCCAAGACAAATTATTGAGAAACAA---AGGTA
TATTATGCGATGGCACAACACCCTGGAATTGCACATCATACACCAATTTAGCCAAATGGAAACCATCCGCAGGCCGCAG-
------CTCGGTTCCAAACAATACCGTCAAGCACATCAGGGTTGCAGTGAGACCAGAGTCCACCAGAAGGAAGAGCTCGA
TGAACTCTGGGACAAGATCCACACA------------------CA----CAATATTTTCACCATTAGCAAAAGCTCCAGA
CACCAGACAGCCAGCCTTTGCACAAGGAGACATCATGTAGATGGAAC--AATGACCATAGCATACACGCCCAATAGCCAC
ATGTCGGACGAGAACACCATAGT----GGCACTATCACCCAGCTCGATCTTGGTGAGTGGATGGAAGAGAATACATGTTG
ACATCGTTAAGACGGAGATCCGAACCATGCCAAGGCTTATCTACCAAGTCCAGTGCATCAAATGACTCCCTCAAAAAATT
GGTATTTCGCGGGGAGCAATTGTAATTGTTCCCGATATTTGCCTTTCTCCGAAAAGAGAGACAACAACAACGAAGTGGTT
GAAGCTTCAAAGGAGATGATCTTCCCGTCAACTTTCGACATATAATTTCCGGCCTTGACTATCTCCCCCTTTTCCAATAA
TTTTCTGGTGATATCATTTACAAGACGAGAGCTTGGAGCACAACCACTCTTCTCCATTGATGAAAACATATTGTCAGCTT
CTTCCAACGATCCTTCTTTCAGAAGATTCTGTATTACTACTCCGTAAGTAGAGGCATTAGGTACCAGCCCACAGGCTGGT
AATGAAGCAAACAAATCGTTAGCTTCTTCTCTTCTCTGAACCTTGTACATTGCCTTAATCATGGTATTGAGTATCACAAT
ATCGAACTTCACATTCATTGCAAC----TAATTTCTGGAAAAAAGCGATTGCTTCATCGGTGCAGTTATTCCTACAAAGT
CCTCCAAGAACTATGCTGTATGTGGAAATGCTCACTGCTGTTCCAGTTTCGATCATCTCATGGAACATCTTTTTTGCAGC
AACAGTTCTTCCAGCACGAAATAACCCATCCAGTATGATGTTATATGTAACAGTGTTAGGTTTAACTCTGGTATGCAACA
T---TTCTCTGAATAGAATAACGCCATCATCAAGCCTTCCACTCCTACAATAGCCATTAATAAGTGTATTATATGTAATC
ACATTTGGCTTAATGCCAGCTGATACCATGGAATCAAGTAGTCGGAGTGCTTCCTCCATCTTGCTGACTAAGCAATATCC
GTCAATCAGCATATTAAATGTAATGAGATCAGGTCTCTCACCAATGTCTATAACCAAGTCAAAGATATGGTGTGCGTCCA
TAACCCTTCCTTCGTTGCACAGACTATGCATTATTGAACTGAAGAAGACAATGTTAGGGTGAGGAATACCTTTGTCCGTT
ATTTCAAAAATCAACTTCTTCACTTTCACCAGATCACCAAGCGTACAGAAACCCTGAATTAGGGAGTGATAAACAACTTT
GCTCGGTTGTACTCCCTTCCCAA---TCATCCGATTAAAATTGTCCATAACATCAGTCAACCTACCCATTCTGCAAAGTG
CAGCTATTACAGTTGCATAGGTGAACACATCCGGACTCACTCCTTGTCCCCGCATTTCAGTAAGCATTGACATAGCTTCA
TCCATCATTCCACATTTAGCATATGCATTAATTAATATGTTGAAAACGTGGCAATCGGGTACAATACCATTGTTTGCGAT
TGAATTAAAGAGATCAATCATATCTGCAAAGAATCCCTCAGCGGCATACCCGTGAAGCAGAACACGATACGTAACGATGT
TAGGCTTGTGGCCTTTTGCAGCCATGGAATGAAAAATTTCTGCAGCTTCTTTGCTTCTTCCATGCTTGCAGAGGGAGGTC
ATCAACGAGCTCCAAGTAACAATATTTGGAGCAAGACCACGGCTTGTCATTTCTCTAAACATTTGAGTCGCCCTTTTCCA
CTGGCCCAAAGTGGAATATCCATGGATCATTGCATTATATGTCACTTCATTCGGTCGAATATCAT
>chr1D_1
CATGCTACACTCACGCCAGATCTCACAGCATTTCAGGAATAGCACAGACCT-CCCCCATGCTCTTGTGAGCTGAGCCCAA
TTTCTTTACTCTAACTGGTCACGAACCTGACATAGTCACATCCAAGTCCCAAGAAAAATTATTGAGAAACAA---AGGTA
TATTATGCGATGGCACAACACCTTGGAACTGCACATCATACACCAATTTAGCCAAATGGAAACCATCCGCAGGCCGCAG-
------CTCGGTTCCAAACAATACCGTCAAGCACATCAGGG-----GTGAGACCAGAGTCCACCGGGAGGAAGAGCTCGA
TGAACTCTGGGACAAGATCCACACA------------------CACACACAATATTTTCGCCATTAGCAAAAGCTCCAGA
CACCAGACAGCCAGCCTTTGCACAAGGAGACATCATGTAGATGGAAC--AATGACCATAGCATACACGCCCAATAGCCAC
ATGTCGGACGAGAACACCATAGT----GGCACTATCACCCAGCTCGATCTTGGTGAGTGGATGGAAGGGAATACATGTTG
ACATCGTTAAGACGGAGATCCGAACCATGCCAAGGCTTATCTATCAAGTCCAGTGCATCAAATGACTCCCTCAAAAAGTT
GGTATTTCGCAGGGAGCAATTGTAATTGTTCCCGATATTTGCCTTTCTCCGAAAAGAGAGACAACAACAACGAAGTGGTT
GAAGCTTCAAAGGAGATGATCTTCCCGTCAACTTTCGACATATAATTTCCGGCCTTGACTATCTCCCCCTTTTCCAATAA
TTTTCTGATGATATCATTTACAAGACGAGAGCTTGGAGCACAACCACTTTTCTCCATTGACGAGAACATATTGTCAGCTT
CTTCCAATGATCCTTCTTTCAAAAGATTGCTTATCATTACTCTGTAAGTAGCAGCATTAGGCACCAGTCCATAGGCTGGT
AATGAAGCAAACAAATCGTTAGCTTCTTCTCTTCTCTGAACCTTGTACATTGCCTTAATCATGGTATTGAGTATCGCAAT
ATCGGACTTCACATTCATTGCAAC----TAATTTCTGGAAAAAAGTGATTGCTTCATCGGTGCAGTTATTCCTACAAAGT
CCTCCAAGAACTATGCTGTATGTGGAAATGCTCACTGCTGTTCCAGTTTCGATCATCTCATGGAACATCTTCTTCGCAGC
AACAGTTCTTCCAGCACGAAATAACCCATCCAGTATGATGTTATATGTAACAGTGTTAGGTTTAACTCTGGTATGCAACA
T---TTCTCTGAATAGAATAACGCCATCATCGAGCCTTCCACTCCTACAATAGCCATTAATAAGTGTATTATATGTAATC
ACATTTGGCTTAATGCCAGCTGATACCATGGAATCAAGTAGTCGGAGTGCTTCCTCCATCTTGCTGACTAAGCAATATCC
GTCAATCAGCGTATTAAACGTAATGAGATCAGGTCTCTCACCAATGTCTATAACCAAGTCAAAGATATGGTGTGCATCCA
TAACCCTTCCTTCGTTGCACAGACTATGCATTATTGAACTGAAGAAGACAATGTTAGGGTGAGGAATACCTTTGTCCGTC
ATTCCAAAAATCAACTCCTTCACTTTCACCAGATTACCATGCGTACAGAAACCCTGAATTAGGGAGTGATAAACAACTTT
GCTCGGTTGTACTCCCTTCCCAA---TCATCCGATTAAAATTGTCCATAGCATCAGTCAACCTACCCATTCTGCAAAGTG
CAGCTATTACAGTTGCATAGGTGAACACATCCGGACTCACTCCTTGTCCCCGCATTTCAGTAAGCATTGACATAGCTTCA
TCCATCATTCCACATTTAGCATATGCATTAATTAATATGTTGAAAACGTGGCAATCGGGTACAATACCATTGTTTGCCAT
TGAATTAAAGAGATCAATCATATCTGCAAAGAATCCTTCAGCGGCATACCCGTGAAGCAGAACACGATACGTAACGATAT
TAGGCTTGTGGCCTTTTGCAGCCATGGAATGAAAAATTTCTGCAGCTTCTTTGCTTCTTCCATGCTTGCAGAGGGAGGTC
ATCAACGAGCTCCAAGTAACAATATTTGGAGCAAGACCACGGCTTGTCATTTCTCTAAACATTTGAGTCGCCTTTTTCCA
CTGGCCCAAAGTGGAATATCCATGGATCATTGCATTATATGTCACTTCATTCGGTCGAATATCAT
>chr1A_357
TATCTTT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TCACCATTATCAAACGCATCACG
TACCATA----CAGCCCTTGCGTAGAGAAGACTTGCAGATTAGGAAC--ATTGCACATTGGATGCACGCCTAGCAGCTAA
GCACCGGCCAAGAACACCATGGT----GGCACCATCACCCAGCTCAATCTTGGTGAGCGCATGGAAGAGACTCT-TGTCC
ACATCGTTGAGAGAGAACTCCGAACCATGACAAGGCTTATCTGCCAAGTCCAGTGCATCAACTGATTCCACCGAAAAACT
GGTACTTTGCAGGGAGCAATTGTATTTGTTCCCGATATTTCCCATTCCCTGAAAAGAGAGACAACAACAACGAACTAGTT
GAAGCATCAAGTGATAGGCTCTTCCCATAAACTTTAGACATATATTTTCCGGCCTTGACTATCTCCCCCTTTTCCAATAA
AGTTCTAATGACATCATTCACAAGACGAGAGCTAGGAGCACAACCACTCTTCTCCATTGATGAGAACATATTGTCAGCTT
CCTCCACTGCTCCTTCTTTTAGAAGGTTTTGTATCATTACTCCGTAAGTGGAAGCATTAGGCACCAACCCGCTGGCTGGT
AATGCAGCAAACAAATCATTAGCTTCTTCTCTTCTGTCACCCTTGTAGAATGCATTAATCATGGTATTGAGTGTTGTGAT
ATTGAACTTCACATTCATTGCACG----TGATTTCTGGAATAGGACGATCGCTTCATCCGCGCAATTATTTCTACAAAGT
CCTCTAAGAAATATGTCGTATGTATGCATGCTCACAGGTGTCCCACTTCCGATAATTTCATGGAGCATTTTCTTTGCAGC
AACTGTTCTCCCAGCACGAAATAACCCCTCCAATATGATGTTATATGTAACAATTGTTGGTTTAACTTTCTTATGCAACA
TTTCTTCTCTGAACAGAATCAACCCATCATCGATCCTTCCACTTTTACAATATCCACTGACAAGTGTACTATACGTAATG
GCATCAGGCTCAATGCCAGCTGATGTCATGACATCAAGTACCATGAATGCTTTGCCCATCTCACCAACTAAGCAATATCC
GTCAATTAGCGTATTAAACATGATGGCATCAGGTTTCTCACCTATGTCTTTAACCAAGTCAAAGATATGGTGTGCATCCA
TAACCCTTCCTTCTTTGCATAGACTGTCTACTATTGAATTGAAGAATGCAATGTTTGGACAAATAATACCTTTATTCATC
ATTTCAGAAATCAATTCCTTCGCTTTGACCAAATCGCCATGTGTACAGAAACCCTGAATTAGGGAGTGATAAACAACTGT
GTCCGGTTGTACTCCCGTACCAA---CCATCTGACTAAACTTATCCATAGCATCAGCTAGCCTACCTGTTCTGCAAAGTG
CAGCTATCAGAGTTGAGTAGGTGACTACACTCGGATTGACTCCTTGTCCTAGCATTTCAGTAAATATGAGCATAGCTTCG
TCGATCATTCCTCGTTTAGCATATGCATCAATTAATATGTTGAAAACTTGGCAATCGGCCACAATACCGCCGCCTTCCAT
TGAATTAAAGAGACTCATCATATCAGAAAAGCTTCCTTCATTGCCATACCCATGGAGAAGAATAGTGTAGGAGACGATAT
CAGGCTTGTGGCCCCTTGCAGCCATGGAAAAGAAAATTTCTGCAGCTTCTTTGCTTCTTCCATGCTTGCAAAGTGAGTCC
ATGAATGAGTTCCGAGTGACAATATCTGGTATAAGACCCCTGCTTGTCATTTCTCTGAACATTTTAGTTGCCTCTTTCCA
TCGGCCCAAAGTGGAATATCCATGGATGATGCTAGTATATGTCAC--------------------
>chr1D_358
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------ATTTTCACCATTAGCAAACGCATCACG
CACTAGTCAGCC----CTTGCATAGAGACGGCTTGCAGAATAGGAAC--AATGCCCATAGGATGCACGCCTGGCAGCTAA
GCACCGGCCCAGAACACCATAGT----GGCACCATCACCCAGCTCAATCTTCATGAGCGCATGGAAGAGACACT-TATCC
ACATCGTTGAGAGGGAACTCCGAAACATGACAAGGCTTATCTGCCAAGTCCAGTGCATCAAATGGTTCCATCGAAAAATT
GGTACTTTGCAGGGAGCAATTGTATTTGTTCCCGATATTTCCCTTTCCCTGAAAAGAGAGACAACAACAACGAACTAGTT
GAAGCTTCAAGCGAGATGCTCTTCCCATCAACTTTAGACATGTATTCTCCGGCCTTGACTATCTCCCCCTTTTCCAATAA
CATTCTAATGATATCATTTATAAGACGAGAGCTGAGAGCACAATCACTCTTCTCCATTGATGAAAACATATCTTCAGCTT
CTTCCACTGATCCCTCTTTTAGAAGATTTCTTATCATGATTCCATACGTGGAAGCATTAGGTACCAACCCAGTGGTTGAT
ATAGCAGCAAACAACTTGTTAGCTTCTTCTCTTCTCTGAACCTTGTACATTGCATTAATCATGGAATTGAGTATTGCAAT
ATCGAACTTCACATTCAGTGCACC----TAATTTTTGGAAAAGGGCGATTGCTTCATTGGTGCAATCATTTCTACAAAGT
CCTCTAATAAATATGTCGTATGTATGCATGCTCACAGGTGTTCCACTTCCGATCATCTCATGGAGCATTTTCTTTGCAGC
AACTGTTCTCCCAGCATGAAATAATCCATCCAGTATGATGTTATATGTAACAGTTGTAGGTTTAACTTCCATATGGGACA
T---TTCTCTGAACAGATTCAACCCATCATCAATCCTTCCACTTTTACAGTATCCACTGACAAGTGTGTTATACGTAATG
ACATCGGGCTCAATGCCAGCTGATACCATGGCATCAAGTACTCCGCATGCTTTCTCCATCTCACCGACTAAGCAATATCC
GTCAATTAGCGTAGTAAATGTAATGACATCAGGTTTCTCACCTATGTCTGTAACCAAGTCAAAGATATGGTGTGCATCCA
CAACCCTTCCTTCATTGCATAGGTTGTCCATTATTGAATTGAAGAATGCAATGTTTGGACGAAGCATACCTTTATTCATC
ATTTCATTAACCAACTCCTTTGCTTTTACCAAAACACCATGTGTACATAAGCCCTGAACTAGGGAGTGGTAAACAACTGT
GTTCGGTTGTACTCCCCTACCAA---TCATCTGACTGAACTTACCCATAGCATCAGCCAGTCTACCCATTTTGCAAAGTG
CAGATACTAGAGTTGAATAGGTGAATACATCCGGACTCAGTCCTTGTCCCCGCATTTTATTAAGTATGATCATAGCTTCA
TCCATCATTCCTTGTTTAGCATATGCATCAATTAATATGTTGAAAACTTGGCAGTTGGCTACAATACCGTCGCCTACCAT
TGAATTAAAGAGATTCATCATATCAGCAAAGCTTCCTTCATTGGCATACCCATGAAGAAGAATAGTGTAGGAGATGATAT
CAGGCTTGTGGCCCCTTGCAGCCATGGAAAAGAAAATTTCTGCAGCTTCTTTGCTTTTTCCATGCTTGCAAAGGGAGGCC
ATGAATGAGTTCCAAGTGACAATATTTGGTATAAGGCCCCTGCTTGTCATTTCTCTGAACATTTTAGTCGCCTCTTTCCA
CCGGCCCAAAGTGGAATATCCATGGATCATGCTAGTATATGTCACCGTATCCGGTCGAA------
>chr1A_541
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
ACATCGTTGAGAGGGAGATGTGAACCATGACAAGGCTTATCTGCCAAGTCCAGCGCATCAACTGATTCCATCGAAAAATT
GGTACTTTGCAGGGAGCAATTGTAGTTGTTCCCGATATTTCCCATTCCCTGAAAAGAGAGACAACAACAACGAACTAGTT
GAAGCTTCAAGTGAGATGCTCTTCCCATCAACTTTAGACATATATTTTCCGGCCTTGACTATCTCCCCCTTTTCCAATAA
AGTTCTGATGACATCATTTACAAGACGAGAGCTAGGAGCACAACCACTCTTCTCCATTGATGAGAACATACTGTCAGCTT
CCTCCACTGCTCCTTCTTTTAGAAGATTTTGTACCATCACTCCGTAAGTGGAAGCATTAGGCACCAACCCGCTGACTGGT
AATGCAGCAAACAAATCATTAGCTTCTTCTCTTCTTTCAACCTTGTACAATGCATTAATGATGGTATTGAGTGTTGTGAT
ATTGAACTTCACATTCATTGCACG----TAATTTCTGGAATAGGACGACCGCTTCATCTGCGCAATTATTTCTACAAAGT
CCTCCAAGAATTATATTATATGTAGAAATGCTCGCCATTATTCCACTTTCGATCATCTCATCGAAGATTTTCTTCGCATC
AGCAGTTCTCCCAGCACGAAATAATCCATTCAGTGTGGTTTCATATGTAACAGTTGTAGGTTTAACTTTCTTATGCAACA
T---TTGTCTGAACAGAATCAACCCATCATCGATCCTTCCACGTTTACAATATCTACTGACAAGTGTGCTATACGTAATG
ACATTAGGCTCAATGCCAGCTGATACCATGGCATCAAGTACTCCACATGCTTTGTCCATCTCGCCGACTAAGCAATATCC
GTCAATCAGCGTACTAAACATACTGATATCAGGTTTCTCACCTATGTCTATAACCAAGTCAAAGATATGGTGTGCATCTA
TAACCCTTCCTTCATTGCATAGACTGTCCATTATTGAACTAAAGAGTGCAGTGTTTGGACGAGCAATACTTTTATTCATC
ATTTCAGAAATCAACTCCTTCGCTTTCACCAAATCACCATGTGTACATAAGAACTGAACTAGGGAGTGATAAACAACTGT
GTCCGGCTGTACTCCCGTACCAACAACCATCTGACTGAACTTATCCATGGCATCAGTCAGCTTACCCATTCTTCAATGTG
CAGATATTAGAGTTGAATAGGTGACTACATCCGGACTCAGTCCTTGTCCCCGCATTTCAGTAAGTATGAGCATAGCTTCA
TCTATCAGCCCTCGTTTAGCATATGCACCAATTAATATGTTGAAAACTTTGCAGTTGGCTACAATGCCGCCGCCTTTCAT
TGAATTGAAGAGACTCATCATATCAGCAAAGCTTCCTTCATTGGCATACCCATGAAGAAGAATAGTGTAGGAGACAATAT
TAGGCTTGCTGCCCTTTCCAGCCATGGAAAAGAAAACTTCTGCAGCTTCTTTGGTTCTTCCATGCTTGCAGAGGGAGTCC
ATGAACGAGTTCCAAGTGACAGTATCTGGTATAAGACCACGGCTTGTCATTTCTCTGAACATTTTACGCACCTGTTTCCA
CCGGCCCAAAGTGGAATATCCATGGATCATGCTAGTATATGTCACCTCATCCGGTCGAACACCAT
>chr1B_541
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
ACATCGTTGAGAGGGAGATCTGAACCATGACAAGGCTTATCTGCCAAGTCCAGCGCATCAACTGATTCCTTTAAAAAATT
GGTACTTTGCAGGGAGCAATTGTAGTTGTTTCCGATATTTCCCATTCCCTGAAAAGAGAGACAACAACAACGAACTAGTT
GAAGCTTCAAGTGAGATGCTCTTCCCATCAACTTTAGACATATATTTTCCGGCCTTGACTATCTCCCCCTTTTCCAATAA
AGTTCTGATGACATCATTTATAAGACGAGAGCTAGGAGCACAGCCACTCTTCTCCATTGATGAGAACATACTGTCAGCTT
CCTCCACTGCTCCTTCTTTTAGAAGATTTTGTACCATTACTCCGTAAGTGGAAGCATTAGGCACCAACCCGCTGGCTGGT
AATGCAGCAAACAAATCATTAGCTTCTTCTCTTCTTTCAACCTTGTACAATGCATTAATGATGGTATTGAGTGTTGTGAT
ATTGAACTTCATATTCATTGCACG----T----TCTGGAATAGGACAATCGCTTCATCTGCGCAATTATTTCTACAAAGT
CCTCCAAGAATTATATTATATGTAGAAATGCTCACCATTATTCCACTTTCGATCATCTCATCGAAGATTTTCTTCGCATC
AGCAGTTCTCCCAGCACGAAATAATCCATTCAGTATGGTTTCATATGTAACAGTTGTAGGTTTAACTTTCTTATGCAACA
T---TTGTCTGAACAGAATCAACCCATTAGCGATCCTTCCACGTTTACAATATCTACTGACAAGTGTGCTATACGTAATG
ACATTAGGCTCAATGCCAGCTGATACCATGGCATCAAGTACTCCACATGCTTTGTCCATCTCACCGACTAAGCAATATCC
GTCAATCAGCGTACTAAACATACTGCTATCAGGTTTCTCACCTATGTCTATAACCAAGTCAAAGATATGGTGTGCATCTA
TAACCCTTCCTTCATTGCGTAGACTGTCCATTATTGAACTGAAGAGTGCAGTGTTTGGACGAGCAATACCTTTATTCATC
ATTTCAGAAATCAACTCCTTCGCTTTCACCAAATCACCATGTGTACATAAGAACTGAACTAGGGAGTGATAAACAACTGT
GTCCGGCTGTACTCCCGTACCAACAACCATCTGACTGAACCTATCCATAGCATCAGTCAGCTTACCCATTCTCCAAAGTG
CAGATATTAGAGTTGAATAGGTGACTACATCCGGACTCAGTCCTTGTCCCCGCATTTCAGTAAGTATGAGCATAGCTTCA
TCTATCAGCCCTCGTTTAGCATATGCACCAATTAATATGTTGAAAACTTTGCAGTTGGCTACAATGCCACCGCCTTTCAT
TGAATTGAAGAGACTCATCATATCAGCAAAGCTTCCTTCATTGGCATACCCATGAAGAAGAATAGTGTAGGAGACAATAT
TAGGCTTGTTGCCCTTTGCAGCCATGGAAAAGAAAACCTTTGCAGCTTCTTTGGTTCTTCCATGCTTGCAAAGGGAGTCC
ATGAACGAGTTCCAAGTGACAATATCTGGTATAAGACCACGGCTTGTCATTTCTCTGAAAATTTTACGCACCTCTTTCAG
CCGGCCCAAAGTGGAATATCCATGGATCATGCTAGTATATGTCACCTCATCCGGTCGAA------
>chr1D_541
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
ACATCGTTGAGAGGGAGATCTGAACCATGACAAGGCTTATCTGCCAAGTCCAGCGCATCAACTGATTCCATTGAAAAATT
GGTACTTTGCAGGGAGCAATTGTAGTTGTTCCCGATATTTCCCATTCCCTGAAAAGAGAGACAACAACAATGAACTAGTT
GAAGCTTCAAGTGAGATGCTCTTCCCATCAACTTTAGACATATATTTTCCGGCCTTGACTATCTCCCCCTTTTCCAATAA
AGTTCTGATGACATCATTTATAAGACGAGAGCTAGGAGCACAACCACTCTTCTCCATTGATGAAAACATACTGTCAGCTT
CCTCCACTGCTCCTTCTTTTAGAAGATTTTGTACCATTACTCCGTAAGTGGAAGCATTAGGCACCAACCCACTGGCTGGT
AATGCAGCAAACAAATCATTAGCTTCTTCTCTTCTTTCAACCTTGTACAATGCATTAATGATGGTATTGAGTGTTGTGAT
ATTGAACTTCACATACATTGCACG----TAATTTCTGGAATAGGACGATCGCTTCATCTGCGCAATTATTTCTACAAAGT
CCTCCAAGAATTATATTATATGCAGAAATGCTCACCATTATTCCACTTTCGATCATCTCATGGAACATTTTCTTTGCATC
AGCAGTTCTCCCAGCACGAAATAATCCATTCAGTATGGTTTCATATGTAACAGTTGTAGGTTTAACTTTCTTATGCAACA
T---TTGTCTGAACAGAATTAACCCATCATCGATCCTTCCACGTTTACAATATCTACTGACAAGTGTGCTATACGTAATG
ACATTAGGCTCAATGCCAGCTGATACCATGGCATCAAGTACTCCACATGCTTTGTCCATCTCGCCGACTAAGCAATATCC
GTCAATCAGCGTACTAAACATACTGATATCAGGTTTCTCACCTATGTCTATAACCAAGTCAAAGATATGGTGTGCATCTA
TAACCCTTCCTTCATTGCATAGACTGTCCATTATTGAACTGAAGAGTGCAGTGTTTGGACGAGCAATACCTTTATTCATC
ATTTCAGAAATCAACTCCTTCGCTTTCACCAAATCACCATGTGTACATAAGAACTGAACTAGGGAGTGATAAAAAACTGT
GTCCGGCTGTACTCCCATACCAACAACCATCTGACTGAACTTATCCATTGCATCAGTCAGCTTACCCATTCTCCAATGTG
CAGATATTAGAGTTGAATAGGTGACTACATCCGGACTCAGTCCTTGTCCCCGCATTTCAGTAAGTATGAGCATAGCTTCA
TCTATCAGCCCTCGTTTAGCATATGCACCAATTAATATGTTGAAAACTTTGCAGTTGGCTACAATGCCGCCGCCTTTCAT
TGAATTGAAGAGACTCATCATATCAGCAAAGCTTCCTTCATTGGCATACCCATGAAGAAGAATAGTGTAGGAGACAATAT
TAGGCTTGTTGCCCTTTGCAGCCATGGAAAAGAAAACCTTTGCAGCTTCTTTGGTTCTTCCATGCTTGCAAAGGGAGTCC
ATGAACGAGTTCCAAGTGACAACATCTGGTATAAGACCACAGCTTGTCATTTCTCTGAACATTTTACGCACCTCTTTCAG
CCGGCCCAAAGTGGAATATCCATGGATCATGCTAGTATATGTCACCTCATCCGGCCGAA------
>chr1A_554
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------GGAGCTCCAAACCACACGAACACTTATCTGCTGATTCCAGTGCATCAACTAACTCCACCGAAGAATT
GGTATTTTACAGGGAGCAATTGTATTTGTTCACGATATTTACCTTTCCCAGAAAACAGAGACAACAACAATGAACAAGTT
GAAGCTTCAAGTGAGATGCTCTTGCCATCAACTTTAGACATATAATTTCCGGCCTTGACTATCTCCCCCTTCTCCAATAA
CGTTCTAATAGTATCATTTAAAAGACGAGAGCAAGGAGCACAACCACTCCTCTCCATTGATAAGAACATACTGTCAGCTT
CTTCCACTGATCCTTCTTTTAGAAGATTTCGTATCATTATGCCGTATGTAGAGGCATTGGGCACCAACCCGCTGTCTGAT
ATTGCAGCAAACAAATCTTTAGCTTCTTCTCTTCTCTGAACAGTGTACATTGAATTAATCATGGTATTGAGTGTTGTGAT
ATTGAACTTTACATTAATTGTGTGTAATT----TCTGGAACATGACGATTGCTTCGTCGGTGCAATTATTTCTACAAAGT
CCTTTAAGAATTATGTTGTATGTGGACAAGCTCACTGTTGTTCCACATCCGATCAACTCATGGAGCATTTTCTTGGCAGC
AACGGTTCTCCCAGCACGAAATAATCCATCCAGTATGATGTTATATGTAACAGTTGTAGGTTTAATTTTCTTATGTGACA
T---TTCTCTGAACAGATTCAACCCATCATCGATCCTTCCACTCTTAAAATAACCATTGACAAGTGTATTATATGTAAAG
ATATCAGGCTCAATGCCGGCTGATATCATGACATCTAGTACACTGACTGCTTTGCCCATCTCACCGACTAGGCAATATCC
ATCAATCAGCGTATTAAACATAATGATGTCAGATCTCTCCCCTATGTCTTTAACCAAGTCAAAGATATGGTGTGCATCCA
TAACCCTTCCTTCTTTGCATAGACTGTGTACTATTGAACTGAAGAATGCAATGTTTGGACGAGGAATACCTTTATTCATC
ATTTCAGAAATCAACTCCTTCGCTTTCACCAAATCACCATGTGTACATAAGCCCTGAACTAGGGAGTGATAAACAACTGT
GTTCGGTTGTACTCCCGTACCAA---TCATCTCACTGAACTTATTCATTGCATCAGCCAGCCTACCCATTCTGCAAAGTG
AAGCTATCACAGTTGAATAGGTGACTACATTTGGATTGACTCCTTGTCCTGGCATTTCAGTAAATATGAGCATAGCTTCG
TCCATCATTCCTCGTTTAGCATATGCATCAATTAATATGTTGAAAAATTGGCAGTTGGCTACAGTACCGTCGCCTTCCAT
TGACTTAAAGAGACTCATCATATCAGGAAAGCTTCCTTCATTGGCATACCCATGAAGAAGAGTGGTGTAGGAGATGATAT
CAGGCTTGTGGCCCTTTGCAGACATGGAATGAAAAATTTCTGCAGCTTCTTTGCTCCTTCCATGCTTGCAAAGGGAGTCA
ATGAACGAGTTCCAAGTGACAATATCTGGTATAAGACCACTGCTTGTCATTTCTCTGAACAGTTTAGTCGCCTCTTTCCA
CTGGCCCAAAGTGGAATATCCATGGATCATGCTAGTATATGTCACTTTATTCGGTTGAA------
>SNPs
--------------S-----------------------------------------------------------------
--S---S---------S----S---S------S--S---------S----------------------------------
---------------S-------------------------------------S-------------------------S
SSSSSS-----------------------------------------------------S-----S--------S-----
-S------------------------SSSSSSSSSSSSSSSSS-------------------------------------
-------------S------------------S----S---------SS-------------------------------
-----------------------S-------------------S--S---------------------------------
----S---------------------------------------------------------------------------
-------------------------------------------------------------------------------S
-----------------------------------------------------S-----------------------S--
--------------S-----------------------------------------------------------------
----------------------------------------------------------------S---------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
--------------------------------------------------------------------------------
-------S---------------------------------------S--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S-----------------------------
---S----------------------------------------------------------------------------
-----------------------------------------------------------------
>forward_414
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------AAGCAC
CACACACCAGACAA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>reverse_2051
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------CTGCTTCTTCCATGCTTGCA----------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
