>input_sequence_87083
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------------------------------------------------------------------ATGTGCTGCTGCCC
GAGCAAGGCGTGCTGCATCTGCATGCTCATCATCCTCGTCCTCATCGCCGTCGGCCTCGTCTTCGGCTTCGGCGTCTACA
CCCGCGGCTTCCACAAGCTCTCCTCCAACATCCACCTCCAGGACGGCGCCTCCTACCGCGCCTACGGCCACCTCAACCTC
GCGCCGCCGCCATCCTACTACT----AG----------------------------------------------------
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>chr5B_1_TraesCS5B01G255400
GGGATCGATGAACTGACCTGGGAAGTTTGCTCACGGCGATTCTGCCCTCCGCGCCAACAGCACGGCGATTCTCCT-CCTC
CGCGCGAACATCACAGCGAAGGCGTGCGCGCCGTTCCTCCTCGGCCGCGTCTCCGGTACTGCAGCGCCTTCCGCCCACGA
CTGTT-------------------GTATGCTGCGGTTGTAGTGGTGTGGCACCGGTCGCCGCGCCGACGCGCACCTGGCC
GCTTAACCCCTCCCTCCACGCCACGCACGCTATCCCTTTCTCACTCCGGCTGAAGACGGCCGCCGAATC----------G
CCACGCCGCCGCCGGCTGCTCCGAATTTGGTGGATTTGG-AAGGAAATGTGA-TGCGCT-CCCTGCG-------------
CTCGGGAGCGGTTTTGAAATGGG-----GAGG--------AGACGGAAGTGGGAA-GGGGAGAAGAACTGGAGGGACCCA
CGACCGCCTAAACACCCAACGAGTATCGT-CC--CGACGCCACGATCAGGTGCCACCTGGCGCACGCATCGATGGAACGG
CAT-----GGTCGGACGCATCAACAAACCTGAGAAGCGCGCGGCCGCGAGATGACGATCGGACGGAGCCCGAGCGCGTGT
GCTC-GTAAGACTAATTAGCACAGCTGCACTTTT-AGATTTTAGGAAAAAAAATATCACCAAAAAAAAAGGAACCAGATA
CCATCGTAAAA-CCGTGCCGT-----TCTCCGGAACCGCAACGGTGTCCACGTCCAGCACCACCACCGCCACCTCGCCCT
TGAAAAGTGGCACCGGACCGGAGCCA----CGACCGGCAGCCAAACCACGG----------ACCGCACCGCAACTCGACA
CCGAACCAACCCGATTCCCCCCACCCAACGAGTAGCGGAGCGGAGCGG----GCCTCTATAAACAGCCGCGCGGCCGGTC
ACGCACGCCTCCCAGAG------CCCCCACGGA------CACCAGCAAAAGCGCCTCGCCTTTTCCGTTACCTTTTCTTC
CTTGTCCTCCCCTACCTCGGAGCGAAAGAGCAGGAGCCGGAGGCGGCGGCGGCCGAGATCAGCAAGATGTGCTGCTGCCC
GAGCAAGGCGTGCTGCATCTGCATGCTCATCATCCTCGTCCTCATCGCCGTCGGCCTCGTCTTCGGCTTCGGCGTCTACA
CCCGCGGCTTCCACAAGCTCTCCTCCAACATCCACCTCCAGGACGGCGCCTCCTACCGCGCCTACGGCCACCTCAACCTC
GCGCCGCCGCCATCCTACTACT----AGAGC---------TCCCTCCCTCCCCCGAGATCTACTCTGTCAGCAGCACGGC
ATGCATTGGGCTCTGTCT----CCCGTGTTCCGTCGCGCGGTGGGGATCGATCCCCTGCACAGCGTCATGCCGTCTGCGA
AGAAGAGATTCCGGGGCCGGTCGATTTACATTGATTTCCTGCTGAATTAATTCCCGTTTGTTGCTTCGCTCCGATGATGT
CGATATTTT--------------------------------------------------------------AGCAGAGAT
TATATTTACAGATTGATGATGATAATTACCGTTACTATGTCCCTCCGTTTGCGTTTTGTTAATTACTGCT----------
----------GCTCATTAGTTTAGTGCTCCATCATGCCTTCGTTTGTGCCTGTTTATTACTGCTGCTCATTAGTTTAGCA
AATACCCCATCATGGAGGCACATGGATGGTCGGG---GTTATCCCGCGAATTGCGATAATCTCGGCGTCTGGCC------
-TTGGCACTTGGCAGCATGTGCTTTTCGGTTTGGCTTGACGCACGAACTGCACT-----ACGCAAGGAGTCAAACGCTTT
CGGGGGAAGCAGAGTGACGTCCACGCTCCTG-----------TGTTGTTGTGCACTCTACGATACGTACTCTGACATTCT
GGGTCATGGCCGGTCAGCAGATTTGGTTGCCCGTCCACCCAAAAGGTAGTAGTAGTGGTTCCGTTGCCTTGCACGTTCGA
CTTTCCGAGTTGAAACGGCGATGCAGTGATGATGTGAACCACTCATAATCACTCTA---ACTGCCCCGTAATGAACCCAT
GACGGCAAAAGCCTGATAGATGCATGATATGTGGTTCAGAAATTGCG---CAGGGCCTCCCAAGCCACACGAC-TGTCTT
GTGATTCGCAAAGTAGTTGGATTTCACACGAGAGAATAGTAATTTTTAATCTCTGAAACTC-------------------
----------------TGAAATTTCAAGCAATTTTTTTATACAAAAGTTGGGATTTTGTCGATCACTCATACTAAGTTTA
AAAGGTTTAAACTTAACAGATTTTTTAAGTAAAACTCCTCCAAATGTATTCAAAATGGATCTTGTTCGAAA
>chr2B_1
GGGATCGATGAACTGACCTGGGAGATTTGCTCACGGCGATTCTGCCCTCCGCACCAACAGCACGGTGATTTTGCT-CCTC
CGCGTCAACAGCATGGCGAAGACGTGCGCGTCGTTCCTCCTCGACCGCATCTTCGGTACTGCAGCACCTTCCGCCCCCGA
CTGTT-------------------GTGTGTTGCGGTTGTAGTTGTATGGCCCCGGTCGCCGCACCGACGCGCACCTGGCC
GCTTAACCCCTCCCTTCACGCCGCGCATGCTATCCCTTTCCCACTCTGGCGGAAGACGGCCGCCGAATC----------G
CCGCGACGCCGCCCGCTGCTCCAGATTTGGGGGATTTGG-AATG-AATGGGA-TGCACT-CCCTGGG-------------
CTCGAGAGCGGTTTCGAAATA--------AGG--------AGACGGAAGTGGAGA-GGGGATAAGAACTAGAGGGACCCA
CGATCACCCAAACACCCAACGGGATTCGCCCC--CGACGCCACGACCAGGTGACACCTG-CGCACGCATCAATAACGGGC
AACGGTTTC-----------------ACCTGGGAATCGCGCGGCCGCGCGATGTGGATCGGACAGTGCAGGAGCGTGTGT
GCTCTTTAAGACTAATGAGCACATCTACACTTTTTAGGTTTTAGG-----------------------------------
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>chr1B_1
GGGATCGATGAACTAACCTGGGAGGTTTGCTCATGGCGATTTCGCCCTCCGCACCAATAGCACGGCGATTCTGCT-CCTC
CACGCGAACAGCACGGCGAAGGCACGCGCATCGTTCCTCCTCGGTCACGTCTCCGGTACTACAGTGCCTTTCGCCCCCGA
CTGTT-------------------GTGTGTTGTGGTTGTAGTCGTATGGCCCCGGTCGATGCATCGACGCGCACATGGCC
TCATAACCCCTCCCTTCACGCCACAC--GCTATCCCTTTATCACTCTAGTAGAAGACGGCCGCTGAATC----------G
CCGTGACACCACCGGCTGCTCCGAATTTGGGGGATTTGA-AAGGAAATGGGG-TGCGCT-CCCTACG-------------
ATCGGGAGCAGTTTCGAAATGGA-----GAGC--------AGACGGAAGTGGGGA-GGGGAGAAGAACTGGAGGGACCCA
CGATCGCCTAGACACCCAACGGGTCTCATCCC--CGACGCCACGACCAGGTGACACCTGGCGCACGCATCGATAAAACGG
G-CGGTTAC-----------------GCCTGGGAAGCGCGCGGCCGCATGATGTCAACCGGATGGTGCGCGAGCGCGTGT
GCTCTACAAGACTAATGAGCACAGCTACACTTTTTAGGTTTT--------------------------------------
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>chr7B_1
GGGATCGATGAACTCACCTAGGAGGTTTGCTCACAGCGATTCTGCCCTCTGCGCCAACAACAAGGCGATTATGTCCCCTC
TGCGCCAACAGCACGGCGAAGGCGCGCGCATCGCTCCTCCTCTGCTGCGTCTCCGGTACTGCAGCGCCTTCCGCCCCCAA
CTGCTGCTACCACAGAGGCCGTTGGTGTGCTGCGATTATAGTTGTATGGCCCCGGTCGCTGCACCGACGCGCCCCCGGTC
GCTTAACCCCTCCCTTCACGAAGCACAGGCTACCCCTTCCT-ACTCCGGCGGAAGACGGCCGCCGAATC----------G
CCGCCACGCCGCCGGCTGCTCAGGATTTGGGGAATTTGG-AAGGAA-TGGGA-TGCTCCCGGGCTCGTGCAGGAGCGATA
ATGGGAGGCGGTTTCGAAATGCGCC------G--------AGATGGAAGT------GGGGGGAAGAAGTGGAGGGACCCA
CGACCGCCTAATCACCAAACGGGCCTTGCCCT--CAACGCCACGACCAGGCGACACCTGGCGCGCGCATCGATAACGG--
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>chr6B_1
GGGATCGATGAACTGACCTGGGAGGTTTGCTCACGGTGATTCTGCCTTGCGCGCCAACAACACGGCGATTCTGCT-CCTC
CGCGCAAATAGCACGACGAAGGCGCGCGCGTCGTTCCTCCTCGGACGCGTCTCCGGTACTGCAGCGCCTTCCGCCCCCGA
CTGTT-------------------GTGTGCTGCGGTTGTAGTGGTACGGCCCCGGTCGCCGCACCGACGCGCACCTGGGC
GCTTAACCCA-----------------------------------------------GGTCGCCGAGTCGCCGCGAGTCG
CCGCGACGCCGCCGGCTGCTCCGGATTTGGTGGATTTGG-AAGGAAATGGGGGTGCGCT-CGCTGCG-------------
CTCGCGAGCGGTTTCGAAATGGG-----GAGG--------AGACGAAAGTGGGGA-GGGGAGAAGAACTGGAGGGACCCA
CGACTGCCTAGACACCCAACGGGTCTCGT-CC--CGACGCCACGACCAAGTGCCACCTCACGCACGCATCGGTAAAACGG
G-CGGGGCGGTCGGACGCATCGATAAACCTAGGAAGCGCGTGGCCGCGTGATGTCGGTCGGACGGCGGGCGAGCGCGTGT
GCTCTGTAAGACTAATTAGCATAGTTGCACTTTTTAGGTTTTAGGTAAAAA-----------------------------
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>chr3B_36
-----------------------------------GCGATTCTGCCCTCCGC-CAAACAGCAAGGCGATTCTGCT-CCTC
CGCGCGAACCACACAGCGAAGACGCGCGCGTCGACCCTCCTCGCCCGCGTCTCCGGTGCTGTAGCACCTTCCGCCTTCGA
CTGCT-------------------GTATGCTGCGGGTGTAGGCGTATGGCCCCGGTCACCGCACCGACGCGCGCATGGCC
GCTTAACCACTCCCTCCATGCCGCGCACGCTGTCCCTTCCTCACTACGCCGGAAGACGGCCGCCGAATC----------G
CCACGCCGCCACCGGCTGCTCCTGATTTGGTGGATTTGG-GAGGAACTCGT--TGCGCT-TCCTGCG-------------
CTCGGGGACGGTTTCGAAATGGG-----GGGACGGGAATAAGACGGAAGTGGGGAGGGGGGGAAGAACTGCCGGGACCCA
TGACCGCTTCTTCGCCCAACGGGTCTTGT-CGCACGACGCCACGACCAGGTGCCACCTGGCGCACGCGTCGAGGAAGCGC
C-CGGTCGGAACGA----------------GCGACGCGCGCAACCGCGGGATGGCGATCGGACGGCGCGCGAGAGCGTGT
GCTCTCTAAAACAAACGAGCCAGCGCCCACTTTTTAGGATTTAGGAAGAAAATAAT------------------------
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>chr2A_38
-------------------------------------GATTCTGCCCTCCGC-CCAACAACAAGACGATTCTGCT-CCTT
CGCGCGAAAAGCACGGCGAAGGCGCGTGCGTCGTTCCTCCTCGGCCGCGTCTCCGGCGCTGCAGCGCCTTCCGCCCCCGA
CTGCT-------------------GTGTGCTGCGGGTGTAGTCGTATGGCCCCGGTCGCCGCACCGACGCGCACCTGCCC
GCTTAACCCCTCCCTTCACGCCACACACGCTATCCCTTGCTCACTCCGGCGGAAGACGGCCGTCGAATT----------G
CCGCGACGCCGTCGGCTGCTCTGAATTCGGGGGATTGGAAGAGGAAATGGGA-TGCGCCCCCCTGCG-------------
CTCGGGAGCGGTTTTGAAATGGG-----GAGG--------AAACGAAAGTGGGGA-GGGAAGAAGAACTGCAGGGACCCA
CGACCGCCTAAGCATCCAACGGGTTTCGA-CCG-CGACGCCACGACCAGGAGACACCTGACGCACGCATCAATAAACG--
-ACGGTTTC-----------------GCCTAGGAAGCGCGCGGCCGCGAGATATC-ATCGGACGGCGCGCGAGCGCGTGT
GCTCTGTAAGACAAACGAGCCAGCGAGCACTTTTTAGGTTTTAGGA----------------------------------
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>chr3B_38
-------------------------------------GATTCTGCCCTCCGC-CAAACCGCAAGGCGATTCTGCT-CCTC
CGCGCGAACCACACAGCGAAGGCACGCGCGTCGTCCCTCCTCGGCCGCGTCTCCGGCGCTGCAGCACCTTCCGCCTCTGA
CTGCT-------------------GTGTGTTGCGGGTGTAGGCGTATGGCCCCGGTCGCCGCACCGATGCGCGCCTGGCC
GCTTAACCCCTCCCTCCACGCCGCGCATGCTGTCCCTTCCTCACTACAACGGAAGACGGCCGCCGAATC----------G
CCGCGCCGCCACCGGATGCTCCGAATTTGGTGGATTTGG-GAGGAAAT--GGGTGTGCT-CCCTCCG-------------
CTCGGGGGCGGTTTCGAAATGGGACTGGGAGG--------AGACAGGAGTGGGGA-GGGGGGAAGAACTGGACGGATCCA
CGACCGCTTCGACGCCCAACGGGTCTCGT-CC--CGACGCCACGACCAGGTGCCACCTGGCGCACGCGTCGATGGAGCGA
G-CGGTTGGAACGA----------------TCGACGCGCGCGTCCGCAAGATGACGATCGGACAGCGCGTGAGAGCGTGT
GCTCTGTAAGACAAACGAGCCAGCGCCCACTTTTTAGGATTTAGGA----------------------------------
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>chr5A_642
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-----------------------------------------------------------------------AACCAGGTA
CCCTCGTAAAAACCGTGCCGTTCCCGTCTCCGGAACCGCAACGGTGTCCACGTCCAGCACCACCGCCACCACCTTGCCCT
TGAAAAGTGGCACCGGACCGAAGCCAGCCACGACCGCCAGCCAAACCACGGACGTGACCGCACCGCACCGCGACTCGACA
CCGAGCCAACCCGATTCCCCCAACCCAACCAGCACA-----GGAGCGGAGCGGTCTCTATAAACAGCCGCGCGGCCGGTC
ACGCACGCCTCCCAAAAGCCCCACCCCCCACCCCCACGGCCCCAGCAAAAGCGCCTCGCCTTTTCCT-------------
-------TCCCCTACCTCGGAGCGGAGC--CAGGAGCCGAAGCCGGAGGAGGA--AGATCAGCAAGATGTGCTGCTGCCC
GAGCAAGGCGTGCTGCATTTGCATGCTCATCATCCTCGTGCTCATCGCCGTCGGCCTCGTCTTCGGCTTCGGCGTCTACA
CCCGCGGCTTCCACAAGCTCTCCTCCAGCATCCACCTCCAGGACGGCGCCTCCTACCGCGCCTACGGCCACCTCAACCTC
GCGCCCCCGCCCGCCTACTACT----AGAGCCCAGAGGGCTCCCTCCCTCCCCCGGGATCTACTCTGCCAGCAGCACGGC
ATGGGATGGATCCCCTCCGGCCCCGGCGGTCCGCCGCGCCCTGGGGATCGATCCCCCGCACAGCGGCATGCCGTCCGCGA
AGAGGAGATTCCGGGGCCGGTCGAT-------------------------------------------------------
--------T--------------------------------------------------------------AGCAGAGAT
TATATTTACAGATTGATGATGATAATTACC-------------TCCCTTTGCGTTTTGTTAATTACCGCTCATTGGTTGA
AAAAATTACTGCTCGTTAGTTTAGTGCTCCATCATGCCTCCGTTTGTGCCTGTTTATTA---CTGCTCATTAGTTTAGCG
CTCCAT-CATCATGGAGGCACATGGATGGTCGGGATAGTTATCCGGCGAGTTGCGATAATCTCGGCGTCTGGCCTTGGCA
GTTGGCACTTGGCAGCATGTGCTTTTCGGTTTGGCTTGACGCACGAACTGCACTACGCAACGCAAGGAGTCAGACGCTTT
CTGAGGAAGCAGAGTGACGTCCACGCTAATCCGTTCCTGTGTTGTTGTTGTGTACTCCACGATACTTGTCG--------T
GGGTCATGGTCAGTCAGCAGATTTGGTTGCCCGTCCACTGAAAAGGTT---GTAGTGGTTCCGTTGCCTTGCACGTTCGA
CCTGCTGAGTTGAAACGGCGATGCAGTA---ATGTGAGCCACTCATAATCACTCTACTAACTGCCCCGTAATAAACCCAT
GACGGCAAAAGCCTGATAGATGCGTGGTATGTGGTTTAGCACGCACCTGCCAAGCCCTCCCCAGCCATCCGATTTGTTCT
GTGATTTGCAAAGTAGTTGCATCCAGCGCGAGGGAATAGTAACTTTTAATAGTTGAAACTTGCGGTTTTTTCGGTCCCTC
ATACAAGTTTTAGAGTTGAAAATTCAAGCGATTGTTTTATACAAAATTTGTGATTTTGTCGATCACTCACACTAAGTTTA
AAATGTTAAAACTCAACGGATTTTTTTTAAAGAACTCCTCCAAATGTATTCAAAATGGATCTTGTTTGAAA
>chr5D_698
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-----------------------------------------------------CCAGCACCACCACCACCACCTCGCCCA
TGAAAAGTGGCACCGGACCGAAGCCA----CGACCGCCTGCCAAACCACGGACGTGACCGCACCGCACCGCAACTCGACA
CCGAACCAACCCGATTCCCCCCACCCAACGAGCAGCGGAGCGGAGCGGAGCGGCCTCTATAAACAGCCGCGCGGCCGGTC
ACGCACGCCTCCCAAAAGCCCCACCCCCACGGA------CCCCAGCAAAAGCGCCTCGCCTTTTCCT-------------
-------TCCCCTACCTCGGAGCGGAGC--CAAGAGCCGGAGGCGGCGGCC-A--AGATCAGCAAGATGTGCTGCTGCCC
GAGCAAGGCGTGCTGCATCTGCATGCTCATCATCCTCGTCCTCATCGCCGTCGGCCTCGTCTTCGGCTTCGGCGTCTACA
CCCGCGGCTTCCACAAGCTCTCCTCCAGCATCCACCTCCAGGACGGCGCCTCCTACCGCGCCTACGGCCACCTCAACCTC
GCGCCGCCGCCCGCCTACTACTAGAGAGAGCCCACAGGGCTCCCTCCCTCCCCCGGGATCTACTCCGCCAGCAGCACGGC
ATGGATTGGGCTTCGTCT----CCGGCGTTCCGTCGCGCGGTGGGGATCGATCCCCTGCACAGCGTCATGCCGTCTGCGA
AGAAGAGATTCCGGGGCCGGTCGAT-------------------------------------------------------
--------TTGCATTGATTTTCTGCTGAATTAATTCCTTTCGTTGCTTCGCTCCGATGATGTCGATATTTTAGCAGAGAG
TATATTTACAGATTGATGATGACAATTACCGTTACTGTATCCCTCCGTTTGCGTTTTGTTAATTACTGCT----------
----------GCTCATTAGTTTAGTGCTTCATCACGGCTCCGTTTGTGCCTGTGGATTA---CTGCTCATTAGTTTAGCA
AATACTCCATCACGGAGGCACATGGATGGTCGGG---GTTATCCGGCGAGTTGCGATAATCTCGGCGTCTGGCCTTG---
----GCACTTGGCAGCATGTGCTTTTCGGTTTGGCTTGACGCACGAACTGCACTGCACTACGCAAGGAGTCAAACGCTTT
CGGGGGAAACGGAGTGACGTCCACGCTAGTCCGTTCCTGTGTTGTTGT---GTACTCTACGATACTTCTCG--------T
GGGTCATGGTCAGTCAGCATATTTGGTTGCCCGTCCACTGAAAAGGTT---GTAGTGGTTCCGTTGCCTTGCACGTTCGA
CCTGCTGAGTTGAAACGGCGATGCCGTCATGTGAACTACTAATCACGTTCG-----------------------------
--------------------------------------------ACCTACCAAGCCCTCCCCAGCCATCCGATT-GTTTT
GTGATTCGCAATGCAGTTGGATCCGACGCGAGGGAATAGTAACTTCTAATCGTTGAAACTTGCGAATTTTTCGGTCGCTC
GGACAAGATTCAGAGTTGAGAATTCAAGCGATTTTTTTATGCAAAAGTTGTGATTTTGTCTATCACTCATACCAAGTTTA
AAAGGTTGAAACTCAACG---TTTTTTTAAAGAACTCCTCCAAATGTATTCAAAATGGATCTTGTTTGAAA
>SNPs
-----------------------S------------------------------------------------S-------
----------S-------------------S---------------------------------------------S---
---------------------------------------------S----S-----------S-----------------
--------------------------------------------------S-----------------------------
-------------------------------------------------S------------------------------
-----------------------------------------------------S--------------------------
---------------------S--S--------------------S----------------------------------
--S------------------S-S-------S---------------------------------S--S-----------
-------------------------------------S--------------SS--SSSSSSSSSSSSSSS------S--
--S----------------------------------------------------------------S------------
--------------------S---------------S-------------------------------------------
--------------------------------S-----------------------------------------------
--------------S-S-----------------------S-------------------------SSSSSSSSSSSSSS
SSSSSSS-----------------S-SSSS----------------------SSS-------------------------
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---------------------------S----------------------------------------------------
-----------SS------------------------------------------S-----------S------------
---S---------S----------S-S-----------------------------------------------------
-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS------------------------------------------------------------------------
------------------------------------S-S-----------------------------------------
---------------------------------------S-------------------SSS------------------
-----S--------------------------------------S----S------------------------------
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---------------------------SS-S---------------------S------------S-SSSSSSSSSSSS-
---------S-S--------------------------SS-------SSSS-----------------------------
-S-S-S---------------------S--------------------------------------------S-------
-----------------------S--S---------S--S-SSSS-S-----S-S------S-----SS---S----S--
----------------------SSS--S----S---------S--------SS-------S-------------------
---------------------S-------S--------------------S-----------------------------
-------S-----S---S--------SSSS-S----------------------------------S----
>forward_1033
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-----------------------------------------------------CCTCGCCTTTTCCGTTACCT-------
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>reverse_1992
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-----------------------------------------------------------------------TGACATTCT
GGGTCATGGCC---------------------------------------------------------------------
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